Wall clock time and date at job start Tue Mar 31 2020 11:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39068 * 120.56221 * 75.42765 * 3 2 1 5 5 C 1.39423 * 119.79885 * 179.97438 * 4 3 2 6 6 C 1.47913 * 119.50331 * 180.02562 * 5 4 3 7 7 C 1.39853 * 120.17355 * 294.72211 * 6 5 4 8 8 F 1.35098 * 120.08570 * 0.02562 * 7 6 5 9 9 C 1.38163 * 119.81917 * 179.81065 * 7 6 5 10 10 C 1.38372 * 120.17759 * 0.44613 * 9 7 6 11 11 C 1.38326 * 120.35278 * 359.78905 * 10 9 7 12 12 C 1.50701 * 119.91325 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.47069 * 0.02562 * 12 11 10 14 14 C 1.38212 * 120.17656 * 359.97438 * 11 10 9 15 15 F 1.35104 * 120.08595 * 179.97438 * 14 11 10 16 16 C 1.40033 * 120.99516 * 0.02562 * 5 4 3 17 17 C 1.35975 * 121.18672 * 0.02562 * 16 5 4 18 18 C 1.41060 * 120.11391 * 0.02562 * 17 16 5 19 19 C 1.40417 * 120.48552 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00232 * 204.73219 * 19 18 17 21 21 C 1.40286 * 120.00157 * 24.72886 * 19 18 17 22 22 N 1.30646 * 120.00100 * 17.52543 * 21 19 18 23 23 Si 1.86799 * 120.00337 * 197.52953 * 21 19 18 24 24 H 1.48499 * 109.47168 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47481 * 119.99574 * 23 21 19 26 26 H 1.48498 * 109.47220 * 239.99872 * 23 21 19 27 27 H 1.07994 * 120.09803 * 0.27374 * 4 3 2 28 28 H 1.07997 * 119.90998 * 180.18690 * 9 7 6 29 29 H 1.08001 * 119.82244 * 179.75978 * 10 9 7 30 30 H 1.09007 * 109.47383 * 120.01811 * 12 11 10 31 31 H 1.08997 * 109.47725 * 240.02229 * 12 11 10 32 32 H 0.96700 * 113.99874 * 179.97438 * 13 12 11 33 33 H 1.07999 * 119.40901 * 180.02562 * 16 5 4 34 34 H 1.08003 * 119.94378 * 179.97438 * 17 16 5 35 35 H 0.96996 * 120.00879 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2753 -0.3003 -1.1590 5 6 4.6694 -0.2945 -1.1411 6 6 5.4151 -0.6150 -2.3777 7 6 5.3336 -1.8948 -2.9359 8 9 4.5726 -2.8432 -2.3473 9 6 6.0301 -2.1851 -4.0933 10 6 6.8139 -1.2164 -4.6949 11 6 6.9035 0.0503 -4.1463 12 6 7.7606 1.0976 -4.8095 13 8 8.3711 0.5441 -5.9770 14 6 6.2092 0.3580 -2.9916 15 9 6.2985 1.5956 -2.4570 16 6 5.3743 0.0102 0.0298 17 6 4.7237 0.3094 1.1857 18 6 3.3136 0.3166 1.2227 19 6 2.6337 0.6239 2.4122 20 1 1.6296 0.2589 2.5700 21 6 3.2587 1.4049 3.3957 22 7 4.3054 2.1248 3.0906 23 14 2.5947 1.4155 5.1417 24 1 1.4106 0.5233 5.2264 25 1 3.6455 0.9339 6.0740 26 1 2.1996 2.7981 5.5127 27 1 2.7462 -0.5331 -2.0712 28 1 5.9659 -3.1719 -4.5272 29 1 7.3590 -1.4507 -5.5974 30 1 7.1409 1.9485 -5.0924 31 1 8.5345 1.4264 -4.1159 32 1 8.9383 1.1640 -6.4556 33 1 6.4542 0.0076 0.0146 34 1 5.2875 0.5410 2.0773 35 1 4.7379 2.6646 3.7707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245852207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:36 Heat of formation + Delta-G solvation = -91.124331 kcal Electronic energy + Delta-G solvation = -24677.082076 eV Core-core repulsion = 20660.768682 eV Total energy + Delta-G solvation = -4016.313394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.081 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.88319 -49.83011 -40.22225 -39.33547 -37.51503 -37.00382 -35.99409 -33.27243 -32.05899 -31.71387 -30.61315 -27.41280 -26.80530 -24.15629 -24.05482 -22.98801 -21.89721 -19.59727 -19.21778 -18.88652 -18.43138 -17.46532 -17.30147 -16.95627 -16.62571 -16.32059 -16.27007 -15.94279 -15.73743 -15.52062 -15.29655 -15.11321 -14.60566 -14.54945 -14.03354 -13.84123 -13.65145 -13.55684 -13.35995 -13.31483 -12.94089 -12.74907 -12.66447 -12.51775 -12.20849 -12.08873 -11.70292 -11.62120 -11.26608 -11.14660 -9.91837 -9.58014 -9.51089 -9.27805 -8.92905 -6.60859 -0.01930 0.02251 0.37459 0.86875 1.34995 1.44678 1.50007 1.96930 2.10655 2.27119 2.42925 2.58683 2.93835 3.19465 3.49403 3.50379 3.55077 3.76518 3.94174 4.05755 4.20688 4.24579 4.46472 4.52014 4.52692 4.86544 4.92988 4.97764 5.01016 5.04345 5.16355 5.18773 5.28636 5.39336 5.63148 5.79500 5.88168 5.97982 6.02864 6.36336 6.55062 6.70054 6.89856 6.93459 7.99218 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.003779 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.037058 B = 7407.684098 C = 8209.215673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.305 3.695 3 C -0.211 4.211 4 C 0.003 3.997 5 C -0.203 4.203 6 C -0.088 4.088 7 C 0.107 3.893 8 F -0.139 7.139 9 C -0.152 4.152 10 C -0.046 4.046 11 C -0.137 4.137 12 C 0.127 3.873 13 O -0.576 6.576 14 C 0.116 3.884 15 F -0.135 7.135 16 C -0.045 4.045 17 C -0.177 4.177 18 C 0.136 3.864 19 C -0.450 4.450 20 H 0.074 0.926 21 C 0.044 3.956 22 N -0.775 5.775 23 Si 0.982 3.018 24 H -0.266 1.266 25 H -0.249 1.249 26 H -0.260 1.260 27 H 0.110 0.890 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.406 0.594 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.030 -1.768 -11.477 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.205 5.205 2 C -0.003 4.003 3 C -0.217 4.217 4 C -0.017 4.017 5 C -0.205 4.205 6 C -0.090 4.090 7 C 0.088 3.912 8 F -0.118 7.118 9 C -0.170 4.170 10 C -0.064 4.064 11 C -0.138 4.138 12 C 0.050 3.950 13 O -0.386 6.386 14 C 0.097 3.903 15 F -0.114 7.114 16 C -0.064 4.064 17 C -0.196 4.196 18 C 0.131 3.869 19 C -0.476 4.476 20 H 0.092 0.908 21 C -0.178 4.178 22 N -0.396 5.396 23 Si 0.802 3.198 24 H -0.190 1.190 25 H -0.172 1.172 26 H -0.184 1.184 27 H 0.128 0.872 28 H 0.186 0.814 29 H 0.189 0.811 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.257 0.743 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.106 -2.077 -11.166 15.885 hybrid contribution -0.016 0.763 1.063 1.308 sum 11.090 -1.315 -10.104 15.060 Atomic orbital electron populations 1.80987 1.12953 1.15883 1.10652 1.25888 0.92820 0.90676 0.90963 1.16884 0.83095 1.25756 0.95958 1.20601 0.92879 0.93471 0.94776 1.17620 0.91620 1.18248 0.92980 1.18813 1.00545 0.92691 0.96977 1.17866 0.94401 0.84887 0.94046 1.91489 1.73764 1.62662 1.83877 1.21429 0.98448 1.02920 0.94219 1.20931 0.95910 0.89852 0.99724 1.19956 1.00839 0.98246 0.94794 1.20634 0.94833 0.92145 0.87395 1.86323 1.67660 1.44204 1.40382 1.17391 0.99483 0.79922 0.93550 1.91489 1.94691 1.39239 1.85949 1.20573 0.98484 0.95400 0.91933 1.20867 0.93299 1.07120 0.98346 1.18748 0.92360 0.86036 0.89775 1.19950 1.01498 1.25938 1.00230 0.90804 1.26864 0.94045 0.91939 1.04958 1.69708 1.16159 1.15792 1.37966 0.85136 0.79718 0.79631 0.75363 1.18965 1.17219 1.18418 0.87161 0.81417 0.81106 0.91145 0.90936 0.74263 0.87110 0.85998 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.42 18.54 19.01 0.35 -26.07 16 2 C 0.31 15.16 14.29 88.33 1.26 16.42 16 3 C -0.21 -10.27 5.93 -19.64 -0.12 -10.39 16 4 C 0.00 0.15 9.24 22.75 0.21 0.36 16 5 C -0.20 -8.44 4.73 -19.99 -0.09 -8.54 16 6 C -0.09 -3.08 5.28 -19.95 -0.11 -3.19 16 7 C 0.11 3.33 7.24 22.64 0.16 3.49 16 8 F -0.14 -4.80 16.67 44.97 0.75 -4.05 16 9 C -0.15 -3.45 10.01 22.28 0.22 -3.23 16 10 C -0.05 -0.97 9.37 22.32 0.21 -0.76 16 11 C -0.14 -3.29 5.88 -19.85 -0.12 -3.40 16 12 C 0.13 2.21 7.01 71.24 0.50 2.71 16 13 O -0.58 -7.81 12.13 -148.98 -1.81 -9.62 16 14 C 0.12 3.60 7.18 22.64 0.16 3.76 16 15 F -0.14 -4.58 16.19 44.97 0.73 -3.86 16 16 C -0.04 -1.92 9.38 22.18 0.21 -1.71 16 17 C -0.18 -8.38 8.63 22.44 0.19 -8.19 16 18 C 0.14 6.89 5.73 -19.86 -0.11 6.77 16 19 C -0.45 -22.69 8.56 23.30 0.20 -22.49 16 20 H 0.07 3.83 7.37 -2.91 -0.02 3.81 16 21 C 0.04 2.01 5.15 85.37 0.44 2.45 16 22 N -0.77 -35.28 10.95 21.88 0.24 -35.04 16 23 Si 0.98 34.71 29.60 68.60 2.03 36.74 16 24 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 25 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 26 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 27 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 28 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.17 2.77 6.99 -2.91 -0.02 2.74 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 1.53 9.12 -74.06 -0.68 0.85 16 33 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 34 H 0.12 5.80 6.17 -2.91 -0.02 5.78 16 35 H 0.30 12.12 8.29 -92.71 -0.77 11.35 16 Total: -1.00 -60.18 327.40 6.03 -54.15 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.51 Total: 13.68 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 3.22 Total: -25.94 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.59 Total: -61.11 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -1.81 Total: -9.62 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 1.48 Total: -7.91 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Total: -60.18 6.03 -54.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245852207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.972 kcal (2) G-P(sol) polarization free energy of solvation -60.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds