Wall clock time and date at job start Tue Mar 31 2020 11:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00081 * 274.99878 * 10 9 7 12 12 C 1.54265 * 110.02979 * 57.91006 * 11 10 9 13 13 C 1.54968 * 104.16064 * 217.13319 * 12 11 10 14 14 C 1.54890 * 102.77512 * 37.88792 * 13 12 11 15 15 C 1.53870 * 110.03352 * 300.69086 * 11 10 9 16 16 S 1.65599 * 119.99913 * 95.00113 * 10 9 7 17 17 O 1.42093 * 104.27994 * 206.07199 * 16 10 9 18 18 O 1.42107 * 104.27677 * 333.92946 * 16 10 9 19 19 C 1.81408 * 104.44927 * 89.99600 * 16 10 9 20 20 C 1.52999 * 109.46959 * 179.97438 * 19 16 10 21 21 F 1.39898 * 109.47034 * 60.00387 * 20 19 16 22 22 F 1.39897 * 109.47059 * 180.02562 * 20 19 16 23 23 F 1.39900 * 109.47256 * 300.00225 * 20 19 16 24 24 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 27 27 H 1.09001 * 110.01704 * 179.29959 * 11 10 9 28 28 H 1.08994 * 110.49157 * 335.78453 * 12 11 10 29 29 H 1.09003 * 110.48561 * 98.42565 * 12 11 10 30 30 H 1.08998 * 110.72049 * 279.58277 * 13 12 11 31 31 H 1.08998 * 110.92581 * 156.29501 * 13 12 11 32 32 H 1.08997 * 110.49215 * 203.40518 * 14 13 12 33 33 H 1.09007 * 110.60109 * 80.81904 * 14 13 12 34 34 H 1.08999 * 110.03154 * 238.56971 * 15 11 10 35 35 H 1.09000 * 110.03535 * 0.02562 * 15 11 10 36 36 H 1.08997 * 109.47108 * 299.99936 * 19 16 10 37 37 H 1.08998 * 109.46582 * 60.00248 * 19 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.7634 -4.0974 -1.2633 12 6 3.4873 -2.9487 -1.9957 13 6 3.1758 -3.1981 -3.4932 14 6 1.7081 -3.6920 -3.4601 15 6 1.6329 -4.5702 -2.1939 16 16 2.6464 -4.3231 1.4292 17 8 3.9356 -4.8607 1.1683 18 8 2.4612 -3.3024 2.4005 19 6 1.4375 -5.6546 1.6667 20 6 1.7443 -6.3956 2.9696 21 9 1.6701 -5.5016 4.0431 22 9 0.8123 -7.4228 3.1524 23 9 3.0312 -6.9403 2.9044 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6243 -2.5567 0.8903 27 1 3.4580 -4.9158 -1.0740 28 1 3.0903 -1.9843 -1.6791 29 1 4.5611 -2.9981 -1.8153 30 1 3.8327 -3.9663 -3.9010 31 1 3.2599 -2.2753 -4.0672 32 1 1.4843 -4.2831 -4.3481 33 1 1.0214 -2.8491 -3.3810 34 1 1.7793 -5.6178 -2.4569 35 1 0.6675 -4.4385 -1.7054 36 1 0.4348 -5.2301 1.7171 37 1 1.4956 -6.3513 0.8305 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253150139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:40 Heat of formation + Delta-G solvation = -224.412096 kcal Electronic energy + Delta-G solvation = -26353.779021 eV Core-core repulsion = 22036.360563 eV Total energy + Delta-G solvation = -4317.418458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.31530 -47.81222 -47.78708 -38.32577 -36.77029 -35.55264 -34.15264 -32.36397 -31.73977 -28.31932 -27.94758 -26.14853 -23.99046 -22.69115 -20.26441 -19.86728 -19.10460 -18.76021 -18.21522 -17.77405 -17.18517 -16.58291 -15.79272 -15.61025 -14.98861 -14.89847 -14.57410 -14.52020 -14.40488 -14.20503 -13.90829 -13.90367 -13.35438 -13.07454 -12.87575 -12.55715 -12.37930 -12.34662 -11.83183 -11.68924 -11.64015 -11.22082 -10.99453 -10.96637 -10.83786 -10.76063 -10.60952 -10.44962 -10.39729 -10.16621 -9.90525 -9.45966 -8.48740 -8.19497 -6.13130 -4.14920 0.35371 2.30887 3.03814 3.30491 3.34762 3.39674 3.49155 3.70421 3.87138 4.20822 4.38317 4.41326 4.91902 4.97818 5.04093 5.11196 5.20044 5.28350 5.62009 5.82024 5.95398 5.98803 6.07658 6.09955 6.22544 6.32748 6.49221 6.70055 6.76338 7.08578 7.19837 7.28926 7.52727 7.83935 8.12121 8.84734 9.48250 10.95342 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.005936 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.510817 B = 4715.920269 C = 5805.799386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.252 3.748 10 N -0.966 5.966 11 C 0.148 3.852 12 C -0.150 4.150 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.139 4.139 16 S 2.602 3.398 17 O -0.946 6.946 18 O -0.907 6.907 19 C -0.727 4.727 20 C 0.475 3.525 21 F -0.168 7.168 22 F -0.174 7.174 23 F -0.172 7.172 24 H 0.265 0.735 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.173 0.827 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -12.233 -2.335 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.130 3.870 10 N -0.806 5.806 11 C 0.042 3.958 12 C -0.189 4.189 13 C -0.159 4.159 14 C -0.156 4.156 15 C -0.178 4.178 16 S 2.686 3.314 17 O -0.936 6.936 18 O -0.897 6.897 19 C -0.846 4.846 20 C 0.419 3.581 21 F -0.149 7.149 22 F -0.155 7.155 23 F -0.153 7.153 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.143 0.857 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.191 0.809 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.764 -11.957 -1.696 12.204 hybrid contribution -0.343 0.293 -0.035 0.452 sum 1.421 -11.664 -1.731 11.877 Atomic orbital electron populations 1.69889 1.05975 1.27316 1.50035 1.24910 0.94866 0.99183 0.94864 0.86620 0.79655 0.82712 0.78901 1.20079 1.21235 1.19954 1.21379 0.93652 0.90197 1.50963 0.91566 1.19174 0.87121 0.82145 0.98544 1.57656 1.59577 1.43915 1.19479 1.21462 0.93985 0.96792 0.83596 1.23139 0.99560 1.02752 0.93402 1.22425 0.96018 1.00281 0.97154 1.22269 0.97497 0.99433 0.96408 1.22588 0.99893 0.98667 0.96651 1.05650 0.75286 0.75034 0.75406 1.93579 1.33878 1.81440 1.84675 1.93694 1.85645 1.50260 1.60071 1.32600 1.26764 1.23435 1.01812 1.19437 0.74934 0.78233 0.85468 1.93317 1.95969 1.67215 1.58447 1.93210 1.65605 1.60709 1.95977 1.93291 1.38831 1.86690 1.96537 0.92574 0.93798 0.94421 0.89450 0.85724 0.92333 0.92546 0.91805 0.92616 0.90890 0.92148 0.90651 0.80918 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.38 7.24 -34.44 -0.25 -13.63 16 8 H 0.07 1.71 6.94 -52.48 -0.36 1.34 16 9 C 0.25 5.63 4.49 -5.19 -0.02 5.60 16 10 N -0.97 -17.94 2.64 -107.38 -0.28 -18.22 16 11 C 0.15 2.40 3.24 -66.82 -0.22 2.18 16 12 C -0.15 -2.55 6.29 -25.03 -0.16 -2.71 16 13 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 14 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 15 C -0.14 -1.90 6.03 -25.61 -0.15 -2.05 16 16 S 2.60 47.10 5.02 -107.50 -0.54 46.56 16 17 O -0.95 -18.17 16.09 -57.54 -0.93 -19.10 16 18 O -0.91 -20.15 16.50 -57.54 -0.95 -21.10 16 19 C -0.73 -9.44 6.20 37.16 0.23 -9.21 16 20 C 0.47 6.68 3.14 37.16 0.12 6.80 16 21 F -0.17 -2.63 16.59 2.25 0.04 -2.59 16 22 F -0.17 -2.25 17.32 2.25 0.04 -2.21 16 23 F -0.17 -2.51 16.59 2.25 0.04 -2.48 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.04 0.99 6.80 -51.93 -0.35 0.63 16 26 H 0.04 0.89 7.61 -51.93 -0.40 0.50 16 27 H 0.09 1.30 6.90 -51.93 -0.36 0.94 16 28 H 0.12 2.53 4.41 -51.93 -0.23 2.30 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.06 6.88 -51.93 -0.36 0.70 16 36 H 0.17 1.93 8.14 -51.93 -0.42 1.51 16 37 H 0.17 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -29.82 323.71 -7.46 -37.28 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.57 Total: -0.01 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.89 Total: -15.06 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.45 Total: -41.99 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.88 Total: -40.20 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.11 Total: -7.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 47.10 SS G_CDS: -0.54 Total: 46.56 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.82 -7.46 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253150139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.136 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds