Wall clock time and date at job start Tue Mar 31 2020 11:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00081 * 274.99878 * 10 9 7 12 12 C 1.54265 * 110.02979 * 57.91006 * 11 10 9 13 13 C 1.54968 * 104.16064 * 217.13319 * 12 11 10 14 14 C 1.54890 * 102.77512 * 37.88792 * 13 12 11 15 15 C 1.53870 * 110.03352 * 300.69086 * 11 10 9 16 16 S 1.65599 * 119.99913 * 95.00113 * 10 9 7 17 17 O 1.42093 * 104.27994 * 206.07199 * 16 10 9 18 18 O 1.42107 * 104.27677 * 333.92946 * 16 10 9 19 19 C 1.81408 * 104.44927 * 89.99600 * 16 10 9 20 20 C 1.52999 * 109.46959 * 179.97438 * 19 16 10 21 21 F 1.39898 * 109.47034 * 60.00387 * 20 19 16 22 22 F 1.39897 * 109.47059 * 180.02562 * 20 19 16 23 23 F 1.39900 * 109.47256 * 300.00225 * 20 19 16 24 24 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 26 26 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 27 27 H 1.09001 * 110.01704 * 179.29959 * 11 10 9 28 28 H 1.08994 * 110.49157 * 335.78453 * 12 11 10 29 29 H 1.09003 * 110.48561 * 98.42565 * 12 11 10 30 30 H 1.08998 * 110.72049 * 279.58277 * 13 12 11 31 31 H 1.08998 * 110.92581 * 156.29501 * 13 12 11 32 32 H 1.08997 * 110.49215 * 203.40518 * 14 13 12 33 33 H 1.09007 * 110.60109 * 80.81904 * 14 13 12 34 34 H 1.08999 * 110.03154 * 238.56971 * 15 11 10 35 35 H 1.09000 * 110.03535 * 0.02562 * 15 11 10 36 36 H 1.08997 * 109.47108 * 299.99936 * 19 16 10 37 37 H 1.08998 * 109.46582 * 60.00248 * 19 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.7634 -4.0974 -1.2633 12 6 3.4873 -2.9487 -1.9957 13 6 3.1758 -3.1981 -3.4932 14 6 1.7081 -3.6920 -3.4601 15 6 1.6329 -4.5702 -2.1939 16 16 2.6464 -4.3231 1.4292 17 8 3.9356 -4.8607 1.1683 18 8 2.4612 -3.3024 2.4005 19 6 1.4375 -5.6546 1.6667 20 6 1.7443 -6.3956 2.9696 21 9 1.6701 -5.5016 4.0431 22 9 0.8123 -7.4228 3.1524 23 9 3.0312 -6.9403 2.9044 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6243 -2.5567 0.8903 27 1 3.4580 -4.9158 -1.0740 28 1 3.0903 -1.9843 -1.6791 29 1 4.5611 -2.9981 -1.8153 30 1 3.8327 -3.9663 -3.9010 31 1 3.2599 -2.2753 -4.0672 32 1 1.4843 -4.2831 -4.3481 33 1 1.0214 -2.8491 -3.3810 34 1 1.7793 -5.6178 -2.4569 35 1 0.6675 -4.4385 -1.7054 36 1 0.4348 -5.2301 1.7171 37 1 1.4956 -6.3513 0.8305 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253150139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:39 Heat of formation + Delta-G solvation = -243.685237 kcal Electronic energy + Delta-G solvation = -26354.614768 eV Core-core repulsion = 22036.360563 eV Total energy + Delta-G solvation = -4318.254204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.44727 -48.97188 -48.89096 -39.61049 -38.30277 -37.08882 -35.70533 -34.17590 -32.89440 -29.71889 -29.34976 -27.64200 -25.16445 -24.47685 -21.41537 -21.18124 -20.30551 -19.89841 -19.57047 -19.06604 -18.61807 -18.40885 -17.26683 -16.97332 -16.48675 -16.09550 -16.03024 -15.73670 -15.69811 -15.34084 -15.03195 -15.02935 -14.64565 -14.49274 -14.28417 -13.95890 -13.81851 -13.56772 -13.42129 -13.24947 -13.16087 -12.94913 -12.68024 -12.50330 -12.33172 -12.20299 -11.99990 -11.80379 -11.71221 -11.58036 -11.24179 -11.04737 -10.50170 -9.74292 -8.14729 -6.19962 -1.06071 1.12313 1.41096 1.44013 1.50003 1.70141 2.31388 2.44359 2.62206 2.66691 2.94694 3.10060 3.18049 3.74016 3.74844 3.89150 4.11521 4.16889 4.32967 4.66701 4.76748 4.82398 4.84874 4.99516 5.10271 5.19426 5.27714 5.35618 5.42680 5.57507 5.60587 5.76359 5.85534 6.04578 6.19518 6.84068 7.44625 8.92564 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.005936 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.510817 B = 4715.920269 C = 5805.799386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.268 3.732 10 N -0.971 5.971 11 C 0.138 3.862 12 C -0.160 4.160 13 C -0.114 4.114 14 C -0.118 4.118 15 C -0.135 4.135 16 S 2.604 3.396 17 O -0.963 6.963 18 O -0.962 6.962 19 C -0.702 4.702 20 C 0.473 3.527 21 F -0.181 7.181 22 F -0.162 7.162 23 F -0.175 7.175 24 H 0.265 0.735 25 H 0.043 0.957 26 H 0.022 0.978 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.197 0.803 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -14.403 -3.577 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.145 3.855 10 N -0.810 5.810 11 C 0.033 3.967 12 C -0.199 4.199 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.174 4.174 16 S 2.694 3.306 17 O -0.953 6.953 18 O -0.952 6.952 19 C -0.828 4.828 20 C 0.417 3.583 21 F -0.163 7.163 22 F -0.143 7.143 23 F -0.157 7.157 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.214 0.786 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 1.666 -14.085 -2.966 14.490 hybrid contribution -0.259 0.836 0.382 0.955 sum 1.407 -13.249 -2.585 13.571 Atomic orbital electron populations 1.69962 1.06840 1.27773 1.51584 1.25547 0.95606 1.01871 0.95217 0.85875 0.78735 0.79992 0.78730 1.19039 1.20624 1.20789 1.21703 0.93391 0.91970 1.49564 0.92711 1.18720 0.87092 0.82229 0.97489 1.57430 1.59143 1.43892 1.20570 1.21776 0.95276 0.96712 0.82950 1.23110 0.99428 1.01343 0.96060 1.22409 0.96878 1.01068 0.94837 1.22265 0.96447 0.98989 0.97858 1.22605 0.98460 1.00656 0.95648 1.05046 0.75642 0.75458 0.74404 1.93556 1.35551 1.81631 1.84588 1.93640 1.86580 1.53499 1.61462 1.32331 1.25473 1.21814 1.03176 1.19526 0.75029 0.78402 0.85338 1.93305 1.96015 1.67736 1.59197 1.93238 1.65101 1.60072 1.95889 1.93293 1.39168 1.86717 1.96515 0.92647 0.93937 0.96039 0.87665 0.89557 0.92527 0.89865 0.92193 0.89668 0.93618 0.88345 0.91103 0.78559 0.77022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.55 13.29 21.45 0.28 -51.26 16 2 C 0.02 0.92 5.46 84.65 0.46 1.39 16 3 Si 0.94 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 7 C -0.53 -27.74 7.24 25.60 0.19 -27.56 16 8 H 0.05 2.94 6.94 -2.91 -0.02 2.92 16 9 C 0.27 12.15 4.49 85.63 0.38 12.53 16 10 N -0.97 -35.46 2.64 -493.65 -1.31 -36.77 16 11 C 0.14 4.23 3.24 45.71 0.15 4.37 16 12 C -0.16 -5.39 6.29 31.70 0.20 -5.19 16 13 C -0.11 -2.98 6.91 31.91 0.22 -2.76 16 14 C -0.12 -2.95 6.83 31.67 0.22 -2.73 16 15 C -0.13 -3.26 6.03 31.32 0.19 -3.07 16 16 S 2.60 92.12 5.02 -56.49 -0.28 91.83 16 17 O -0.96 -36.03 16.09 -127.65 -2.05 -38.08 16 18 O -0.96 -43.61 16.50 -127.65 -2.11 -45.72 16 19 C -0.70 -16.03 6.20 71.98 0.45 -15.58 16 20 C 0.47 12.11 3.14 71.98 0.23 12.33 16 21 F -0.18 -5.47 16.59 44.97 0.75 -4.72 16 22 F -0.16 -3.66 17.32 44.97 0.78 -2.89 16 23 F -0.18 -4.74 16.59 44.97 0.75 -4.00 16 24 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.04 1.94 6.80 -2.38 -0.02 1.92 16 26 H 0.02 1.05 7.61 -2.39 -0.02 1.03 16 27 H 0.11 2.83 6.90 -2.39 -0.02 2.81 16 28 H 0.09 3.61 4.41 -2.39 -0.01 3.60 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.80 6.88 -2.39 -0.02 1.79 16 36 H 0.20 3.71 8.14 -2.39 -0.02 3.69 16 37 H 0.21 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -66.64 323.71 2.61 -64.03 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.10 Total: 8.26 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 2.68 Total: -26.27 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -1.02 Total: -88.03 kcal Atomic # 8 Polarization: -79.64 SS G_CDS: -4.16 Total: -83.80 kcal Atomic # 9 Polarization: -13.88 SS G_CDS: 2.27 Total: -11.61 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 92.12 SS G_CDS: -0.28 Total: 91.83 kcal Total: -66.64 2.61 -64.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253150139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.654 kcal (2) G-P(sol) polarization free energy of solvation -66.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds