Wall clock time and date at job start Tue Mar 31 2020 11:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99819 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.47104 * 30.00320 * 3 2 1 6 6 H 1.48501 * 109.47063 * 149.99533 * 3 2 1 7 7 C 1.37879 * 119.99840 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.85254 * 0.02562 * 7 2 1 9 9 C 1.53225 * 108.53508 * 128.63746 * 8 7 2 10 10 C 1.52955 * 109.40527 * 54.62607 * 9 8 7 11 11 H 1.09009 * 109.40991 * 56.51045 * 10 9 8 12 12 N 1.46498 * 109.35572 * 176.32731 * 10 9 8 13 13 S 1.65604 * 120.00412 * 265.32168 * 12 10 9 14 14 O 1.42099 * 104.28023 * 181.07372 * 13 12 10 15 15 O 1.42107 * 104.27556 * 308.93018 * 13 12 10 16 16 C 1.81399 * 104.44770 * 65.00016 * 13 12 10 17 17 C 1.53006 * 109.46964 * 180.02562 * 16 13 12 18 18 C 1.52997 * 109.46962 * 180.02562 * 17 16 13 19 19 F 1.39895 * 109.47330 * 60.00201 * 18 17 16 20 20 F 1.39903 * 109.47069 * 180.02562 * 18 17 16 21 21 F 1.39896 * 109.47201 * 299.99905 * 18 17 16 22 22 C 1.52953 * 109.82147 * 296.40182 * 10 9 8 23 23 C 1.51265 * 120.83517 * 179.97438 * 7 2 1 24 24 H 0.96999 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.62116 * 8.92284 * 8 7 2 26 26 H 1.08990 * 109.78337 * 248.45009 * 8 7 2 27 27 H 1.09004 * 109.48416 * 294.65094 * 9 8 7 28 28 H 1.08995 * 109.49400 * 174.61607 * 9 8 7 29 29 H 0.97000 * 120.00157 * 85.32553 * 12 10 9 30 30 H 1.09000 * 109.46894 * 299.99681 * 16 13 12 31 31 H 1.08997 * 109.47096 * 60.00444 * 16 13 12 32 32 H 1.08999 * 109.47280 * 300.00093 * 17 16 13 33 33 H 1.09003 * 109.47029 * 59.99730 * 17 16 13 34 34 H 1.09002 * 109.48451 * 183.57679 * 22 10 9 35 35 H 1.08999 * 109.48225 * 303.60568 * 22 10 9 36 36 H 1.08999 * 109.61868 * 111.64115 * 23 7 2 37 37 H 1.08999 * 109.64238 * 351.06564 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 1.2677 -2.5152 0.0005 9 6 1.8231 -3.3827 -1.1338 10 6 3.3401 -3.5070 -0.9825 11 1 3.5739 -3.9123 0.0021 12 7 3.8589 -4.4072 -2.0152 13 16 4.0817 -6.0132 -1.6781 14 8 4.6091 -6.5541 -2.8817 15 8 4.8426 -6.0171 -0.4780 16 6 2.4098 -6.6479 -1.3739 17 6 2.4828 -8.1409 -1.0469 18 6 1.0727 -8.6763 -0.7909 19 9 0.2874 -8.4871 -1.9331 20 9 1.1394 -10.0413 -0.4913 21 9 0.5018 -7.9903 0.2864 22 6 3.9909 -2.1311 -1.1336 23 6 3.5170 -1.2162 0.0000 24 1 -0.4850 0.8400 0.0004 25 1 0.2036 -2.3409 -0.1592 26 1 1.4167 -3.0206 0.9546 27 1 1.5903 -2.9199 -2.0929 28 1 1.3709 -4.3734 -1.0890 29 1 4.0721 -4.0626 -2.8965 30 1 1.9657 -6.1137 -0.5340 31 1 1.7976 -6.5000 -2.2635 32 1 2.9272 -8.6754 -1.8864 33 1 3.0950 -8.2884 -0.1571 34 1 5.0750 -2.2348 -1.0883 35 1 3.7069 -1.6980 -2.0927 36 1 3.8778 -1.5995 0.9544 37 1 3.8981 -0.2076 -0.1603 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259874726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:42 Heat of formation + Delta-G solvation = -250.815674 kcal Electronic energy + Delta-G solvation = -25402.097855 eV Core-core repulsion = 21083.534451 eV Total energy + Delta-G solvation = -4318.563403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.33478 -47.84806 -47.78375 -37.72945 -37.04982 -36.01146 -34.51672 -33.80361 -31.36325 -29.80183 -27.08222 -26.98162 -22.96987 -22.20661 -21.54013 -19.83588 -19.32749 -18.80561 -18.70018 -18.16136 -17.13839 -16.45077 -16.24057 -15.98081 -15.30834 -14.72200 -14.69644 -14.48293 -14.27837 -14.15094 -13.94493 -13.92430 -13.44679 -13.22941 -13.05054 -12.67937 -12.49085 -12.34190 -12.31339 -12.16147 -12.10485 -12.02520 -11.49258 -11.24231 -10.99606 -10.90127 -10.80145 -10.31725 -10.07488 -9.69430 -9.41495 -9.03464 -8.56878 -8.54599 -6.18385 -4.09938 0.14958 2.45573 2.72493 3.21832 3.31619 3.32415 3.42561 3.47377 3.70704 3.83047 4.09722 4.31517 4.34236 4.52306 4.76196 5.02069 5.08239 5.26785 5.33986 5.69716 5.83175 5.92551 6.35220 6.42939 6.57384 6.69381 6.86755 6.93286 7.04497 7.20165 7.31955 7.56161 7.62979 7.73059 8.28243 8.87704 9.46135 10.90978 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.004083 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.099984 B = 6855.922899 C = 7918.787354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.492 4.492 8 C 0.010 3.990 9 C -0.130 4.130 10 C 0.152 3.848 11 H 0.084 0.916 12 N -1.109 6.109 13 S 2.621 3.379 14 O -0.963 6.963 15 O -0.949 6.949 16 C -0.653 4.653 17 C -0.158 4.158 18 C 0.463 3.537 19 F -0.180 7.180 20 F -0.183 7.183 21 F -0.176 7.176 22 C -0.108 4.108 23 C -0.016 4.016 24 H 0.265 0.735 25 H 0.061 0.939 26 H 0.007 0.993 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.415 0.585 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -14.470 -3.667 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.511 4.511 8 C -0.028 4.028 9 C -0.170 4.170 10 C 0.046 3.954 11 H 0.102 0.898 12 N -0.869 5.869 13 S 2.710 3.290 14 O -0.953 6.953 15 O -0.939 6.939 16 C -0.779 4.779 17 C -0.197 4.197 18 C 0.408 3.592 19 F -0.161 7.161 20 F -0.164 7.164 21 F -0.157 7.157 22 C -0.147 4.147 23 C -0.054 4.054 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.250 0.750 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.454 -14.906 -3.452 15.936 hybrid contribution -0.637 1.120 -0.394 1.348 sum 3.817 -13.786 -3.846 14.813 Atomic orbital electron populations 1.69828 1.06193 1.27077 1.49410 1.24849 0.94714 0.98644 0.94394 0.86653 0.79984 0.83224 0.78449 1.20418 1.21638 1.19125 1.20005 0.89286 0.91456 1.50338 1.19367 0.98924 0.92909 0.91637 1.22287 0.93190 0.98588 1.02898 1.21019 0.94632 0.90974 0.88727 0.89834 1.55679 1.82188 1.25458 1.23572 1.04636 0.76048 0.73827 0.74443 1.93592 1.76557 1.78773 1.46390 1.93624 1.65399 1.85830 1.49064 1.30972 1.29704 1.03217 1.14001 1.22545 0.94036 0.95261 1.07902 1.20183 0.89139 0.75527 0.74387 1.93199 1.77332 1.94876 1.50693 1.93199 1.96702 1.33236 1.93301 1.93228 1.86841 1.79385 1.56276 1.21808 0.97244 0.94111 1.01578 1.19752 0.96725 0.95193 0.93740 0.92501 0.92067 0.97509 0.92097 0.94929 0.75014 0.82926 0.83393 0.85876 0.85699 0.93901 0.92297 0.96015 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 12.73 55.43 0.71 -23.70 16 2 C 0.08 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.89 20.17 27.27 -169.99 -4.64 15.53 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.27 -5.86 6.46 56.52 0.37 -5.49 16 7 C -0.49 -12.06 5.52 -98.92 -0.55 -12.61 16 8 C 0.01 0.22 5.97 -27.49 -0.16 0.06 16 9 C -0.13 -2.36 5.51 -26.64 -0.15 -2.50 16 10 C 0.15 2.53 2.59 -67.98 -0.18 2.35 16 11 H 0.08 1.42 7.48 -51.92 -0.39 1.03 16 12 N -1.11 -14.81 5.35 -4.93 -0.03 -14.84 16 13 S 2.62 32.56 5.44 -107.50 -0.58 31.98 16 14 O -0.96 -13.69 18.08 -57.54 -1.04 -14.73 16 15 O -0.95 -14.76 17.39 -57.54 -1.00 -15.76 16 16 C -0.65 -6.48 4.87 37.16 0.18 -6.30 16 17 C -0.16 -1.35 5.27 -26.73 -0.14 -1.49 16 18 C 0.46 4.68 3.16 37.16 0.12 4.80 16 19 F -0.18 -1.97 16.80 2.25 0.04 -1.93 16 20 F -0.18 -1.85 17.32 2.25 0.04 -1.81 16 21 F -0.18 -2.07 16.80 2.25 0.04 -2.03 16 22 C -0.11 -1.96 5.46 -26.66 -0.15 -2.11 16 23 C -0.02 -0.34 5.59 -27.51 -0.15 -0.49 16 24 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.06 1.55 7.07 -51.92 -0.37 1.18 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.03 0.49 5.68 -51.93 -0.29 0.20 16 29 H 0.42 4.85 8.80 -34.47 -0.30 4.55 16 30 H 0.15 1.55 6.48 -51.92 -0.34 1.22 16 31 H 0.15 1.26 7.80 -51.93 -0.41 0.85 16 32 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -30.74 320.62 -7.38 -38.12 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.47 Total: 0.73 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.27 Total: -16.39 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.68 Total: -38.54 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -2.04 Total: -30.49 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.11 Total: -5.77 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.64 Total: 15.53 kcal Atomic # 16 Polarization: 32.56 SS G_CDS: -0.58 Total: 31.98 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.74 -7.38 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259874726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.694 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds