Wall clock time and date at job start Tue Mar 31 2020 11:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99819 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.47104 * 30.00320 * 3 2 1 6 6 H 1.48501 * 109.47063 * 149.99533 * 3 2 1 7 7 C 1.37879 * 119.99840 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.85254 * 0.02562 * 7 2 1 9 9 C 1.53225 * 108.53508 * 128.63746 * 8 7 2 10 10 C 1.52955 * 109.40527 * 54.62607 * 9 8 7 11 11 H 1.09009 * 109.40991 * 56.51045 * 10 9 8 12 12 N 1.46498 * 109.35572 * 176.32731 * 10 9 8 13 13 S 1.65604 * 120.00412 * 265.32168 * 12 10 9 14 14 O 1.42099 * 104.28023 * 181.07372 * 13 12 10 15 15 O 1.42107 * 104.27556 * 308.93018 * 13 12 10 16 16 C 1.81399 * 104.44770 * 65.00016 * 13 12 10 17 17 C 1.53006 * 109.46964 * 180.02562 * 16 13 12 18 18 C 1.52997 * 109.46962 * 180.02562 * 17 16 13 19 19 F 1.39895 * 109.47330 * 60.00201 * 18 17 16 20 20 F 1.39903 * 109.47069 * 180.02562 * 18 17 16 21 21 F 1.39896 * 109.47201 * 299.99905 * 18 17 16 22 22 C 1.52953 * 109.82147 * 296.40182 * 10 9 8 23 23 C 1.51265 * 120.83517 * 179.97438 * 7 2 1 24 24 H 0.96999 * 120.00064 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.62116 * 8.92284 * 8 7 2 26 26 H 1.08990 * 109.78337 * 248.45009 * 8 7 2 27 27 H 1.09004 * 109.48416 * 294.65094 * 9 8 7 28 28 H 1.08995 * 109.49400 * 174.61607 * 9 8 7 29 29 H 0.97000 * 120.00157 * 85.32553 * 12 10 9 30 30 H 1.09000 * 109.46894 * 299.99681 * 16 13 12 31 31 H 1.08997 * 109.47096 * 60.00444 * 16 13 12 32 32 H 1.08999 * 109.47280 * 300.00093 * 17 16 13 33 33 H 1.09003 * 109.47029 * 59.99730 * 17 16 13 34 34 H 1.09002 * 109.48451 * 183.57679 * 22 10 9 35 35 H 1.08999 * 109.48225 * 303.60568 * 22 10 9 36 36 H 1.08999 * 109.61868 * 111.64115 * 23 7 2 37 37 H 1.08999 * 109.64238 * 351.06564 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 1.2677 -2.5152 0.0005 9 6 1.8231 -3.3827 -1.1338 10 6 3.3401 -3.5070 -0.9825 11 1 3.5739 -3.9123 0.0021 12 7 3.8589 -4.4072 -2.0152 13 16 4.0817 -6.0132 -1.6781 14 8 4.6091 -6.5541 -2.8817 15 8 4.8426 -6.0171 -0.4780 16 6 2.4098 -6.6479 -1.3739 17 6 2.4828 -8.1409 -1.0469 18 6 1.0727 -8.6763 -0.7909 19 9 0.2874 -8.4871 -1.9331 20 9 1.1394 -10.0413 -0.4913 21 9 0.5018 -7.9903 0.2864 22 6 3.9909 -2.1311 -1.1336 23 6 3.5170 -1.2162 0.0000 24 1 -0.4850 0.8400 0.0004 25 1 0.2036 -2.3409 -0.1592 26 1 1.4167 -3.0206 0.9546 27 1 1.5903 -2.9199 -2.0929 28 1 1.3709 -4.3734 -1.0890 29 1 4.0721 -4.0626 -2.8965 30 1 1.9657 -6.1137 -0.5340 31 1 1.7976 -6.5000 -2.2635 32 1 2.9272 -8.6754 -1.8864 33 1 3.0950 -8.2884 -0.1571 34 1 5.0750 -2.2348 -1.0883 35 1 3.7069 -1.6980 -2.0927 36 1 3.8778 -1.5995 0.9544 37 1 3.8981 -0.2076 -0.1603 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259874726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:41 Heat of formation + Delta-G solvation = -272.436364 kcal Electronic energy + Delta-G solvation = -25403.035398 eV Core-core repulsion = 21083.534451 eV Total energy + Delta-G solvation = -4319.500947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.13961 -48.64207 -48.61959 -39.16884 -38.16762 -37.09956 -35.39049 -35.26137 -33.02550 -31.41019 -28.60145 -27.90225 -23.87990 -23.81050 -23.07482 -21.30519 -20.38587 -19.60740 -19.57381 -19.08620 -18.26647 -17.75117 -17.34694 -17.17407 -16.36315 -16.29195 -15.74119 -15.53241 -15.12210 -15.01979 -14.90700 -14.77148 -14.74904 -14.70541 -14.18098 -14.08113 -13.99020 -13.74642 -13.31005 -13.27453 -13.16216 -12.99569 -12.85233 -12.76641 -12.63429 -12.46452 -11.91385 -11.85206 -11.72186 -11.36846 -10.93361 -10.69461 -10.49929 -10.08014 -8.13280 -6.06568 -0.83882 1.40845 1.45784 1.52975 1.62328 1.77398 2.44291 2.56817 2.71833 2.96048 2.99426 3.14795 3.18590 3.56563 3.72159 3.94709 4.16402 4.25325 4.29301 4.46281 4.49352 4.62505 4.80877 5.00770 5.03923 5.12494 5.29041 5.31829 5.52474 5.65269 5.70835 5.81691 5.90555 6.19301 6.39730 7.01108 7.51669 8.97258 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.004083 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.099984 B = 6855.922899 C = 7918.787354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.254 1.254 7 C -0.497 4.497 8 C 0.002 3.998 9 C -0.122 4.122 10 C 0.161 3.839 11 H 0.084 0.916 12 N -1.106 6.106 13 S 2.640 3.360 14 O -0.978 6.978 15 O -0.981 6.981 16 C -0.645 4.645 17 C -0.164 4.164 18 C 0.462 3.538 19 F -0.185 7.185 20 F -0.183 7.183 21 F -0.188 7.188 22 C -0.107 4.107 23 C -0.022 4.022 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.005 0.995 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.424 0.576 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 -15.736 -4.440 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.178 1.178 7 C -0.516 4.516 8 C -0.036 4.036 9 C -0.161 4.161 10 C 0.054 3.946 11 H 0.102 0.898 12 N -0.865 5.865 13 S 2.733 3.267 14 O -0.968 6.968 15 O -0.971 6.971 16 C -0.774 4.774 17 C -0.203 4.203 18 C 0.407 3.593 19 F -0.167 7.167 20 F -0.164 7.164 21 F -0.170 7.170 22 C -0.147 4.147 23 C -0.060 4.060 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.260 0.740 30 H 0.172 0.828 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.957 -16.163 -4.245 17.741 hybrid contribution -1.125 1.389 -0.127 1.792 sum 4.832 -14.774 -4.371 16.147 Atomic orbital electron populations 1.69967 1.07638 1.27298 1.52252 1.25570 0.95259 1.01660 0.95098 0.85858 0.79254 0.79917 0.78543 1.19952 1.22476 1.17802 1.20667 0.91195 0.91913 1.47867 1.19360 0.97181 0.93578 0.93473 1.22124 0.94506 0.99206 1.00312 1.20687 0.93319 0.90915 0.89666 0.89826 1.55447 1.82124 1.25607 1.23360 1.03949 0.76437 0.73054 0.73288 1.93576 1.77593 1.78667 1.46971 1.93588 1.67356 1.86047 1.50084 1.30833 1.27240 1.04268 1.15041 1.22740 0.93338 0.94235 1.09998 1.20383 0.89576 0.75480 0.73848 1.93189 1.77676 1.94903 1.50921 1.93200 1.96703 1.33262 1.93282 1.93208 1.87171 1.79652 1.56921 1.21732 0.98638 0.94223 1.00100 1.19795 0.94682 0.96229 0.95296 0.92998 0.95401 0.97657 0.92758 0.91776 0.73961 0.82845 0.81533 0.83364 0.83960 0.91763 0.92097 0.95826 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.78 12.73 21.45 0.27 -52.51 16 2 C 0.02 1.16 5.46 84.65 0.46 1.63 16 3 Si 0.94 41.53 27.27 68.60 1.87 43.41 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.25 -10.59 6.46 99.48 0.64 -9.94 16 7 C -0.50 -24.33 5.52 -16.17 -0.09 -24.42 16 8 C 0.00 0.10 5.97 30.10 0.18 0.28 16 9 C -0.12 -4.22 5.51 30.65 0.17 -4.05 16 10 C 0.16 4.97 2.59 44.96 0.12 5.09 16 11 H 0.08 2.64 7.48 -2.38 -0.02 2.62 16 12 N -1.11 -26.40 5.35 -169.51 -0.91 -27.30 16 13 S 2.64 58.16 5.44 -56.49 -0.31 57.86 16 14 O -0.98 -24.99 18.08 -127.65 -2.31 -27.30 16 15 O -0.98 -28.18 17.39 -127.65 -2.22 -30.40 16 16 C -0.64 -10.75 4.87 71.98 0.35 -10.40 16 17 C -0.16 -2.28 5.27 30.60 0.16 -2.12 16 18 C 0.46 8.26 3.16 71.98 0.23 8.49 16 19 F -0.19 -3.65 16.80 44.97 0.76 -2.89 16 20 F -0.18 -3.31 17.32 44.97 0.78 -2.53 16 21 F -0.19 -4.08 16.80 44.97 0.76 -3.33 16 22 C -0.11 -3.66 5.46 30.64 0.17 -3.49 16 23 C -0.02 -0.90 5.59 30.09 0.17 -0.73 16 24 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.03 1.43 7.07 -2.38 -0.02 1.41 16 26 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.06 1.78 5.68 -2.39 -0.01 1.77 16 29 H 0.42 8.66 8.80 -96.75 -0.85 7.81 16 30 H 0.15 2.65 6.48 -2.39 -0.02 2.63 16 31 H 0.17 2.21 7.80 -2.39 -0.02 2.19 16 32 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.03 1.39 4.78 -2.39 -0.01 1.38 16 Total: -1.00 -66.26 320.62 0.81 -65.45 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.21 Total: 9.28 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 1.91 Total: -29.73 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -0.63 Total: -79.81 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -4.53 Total: -57.70 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 2.29 Total: -8.75 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.87 Total: 43.41 kcal Atomic # 16 Polarization: 58.16 SS G_CDS: -0.31 Total: 57.86 kcal Total: -66.26 0.81 -65.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259874726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.983 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds