Wall clock time and date at job start Tue Mar 31 2020 11:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48504 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47147 * 300.00483 * 3 2 1 6 6 H 1.48499 * 109.46750 * 60.00781 * 3 2 1 7 7 C 1.38802 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99402 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99788 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47280 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99749 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00241 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00000 * 180.02562 * 13 11 10 15 15 H 1.08992 * 110.46104 * 332.62133 * 14 13 11 16 16 C 1.51453 * 110.29803 * 95.44030 * 14 13 11 17 17 O 1.21282 * 124.94939 * 283.18082 * 16 14 13 18 18 N 1.34510 * 110.11493 * 103.34317 * 16 14 13 19 19 C 1.46944 * 111.30180 * 359.19275 * 18 16 14 20 20 C 1.53743 * 105.31360 * 16.60702 * 19 18 16 21 21 C 1.52281 * 110.76105 * 217.21614 * 20 19 18 22 22 C 1.53258 * 109.24301 * 291.40503 * 21 20 19 23 23 O 1.42917 * 109.29662 * 303.77426 * 22 21 20 24 24 C 1.42911 * 114.25117 * 61.82928 * 23 22 21 25 25 C 1.52272 * 110.77724 * 93.57216 * 20 19 18 26 26 H 0.96994 * 120.00269 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47026 * 59.99785 * 10 9 7 28 28 H 1.08996 * 109.47346 * 300.00067 * 10 9 7 29 29 H 0.97001 * 124.35273 * 179.46970 * 18 16 14 30 30 H 1.09002 * 110.27599 * 135.56090 * 19 18 16 31 31 H 1.08998 * 110.27819 * 257.55251 * 19 18 16 32 32 H 1.08996 * 109.50496 * 51.33457 * 21 20 19 33 33 H 1.09001 * 109.50197 * 171.47332 * 21 20 19 34 34 H 1.08999 * 109.49304 * 183.83158 * 22 21 20 35 35 H 1.08993 * 109.49856 * 63.72712 * 22 21 20 36 36 H 1.09000 * 109.50005 * 178.21700 * 24 23 22 37 37 H 1.08994 * 109.50299 * 58.10611 * 24 23 22 38 38 H 1.09002 * 109.51062 * 188.50674 * 25 20 19 39 39 H 1.08996 * 109.50703 * 308.65445 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7956 -5.5015 -0.0009 13 8 2.8407 -6.3389 -0.0033 14 6 2.2611 -7.6702 -0.0033 15 1 1.2781 -7.6577 0.4674 16 6 2.1732 -8.2049 -1.4176 17 8 1.3410 -7.8734 -2.2352 18 7 3.1504 -9.1035 -1.6339 19 6 3.9986 -9.2663 -0.4451 20 6 3.1909 -8.6633 0.7157 21 6 4.1072 -7.9348 1.6898 22 6 4.9871 -8.9577 2.4166 23 8 4.1543 -9.9248 3.0597 24 6 3.3376 -10.6836 2.1655 25 6 2.3822 -9.7394 1.4275 26 1 -0.4850 0.8400 0.0004 27 1 3.1252 -3.7317 0.8875 28 1 3.1238 -3.7310 -0.8925 29 1 3.2810 -9.5798 -2.4688 30 1 4.1926 -10.3231 -0.2613 31 1 4.9372 -8.7274 -0.5741 32 1 4.7386 -7.2356 1.1418 33 1 3.5055 -7.3900 2.4173 34 1 5.5963 -8.4481 3.1631 35 1 5.6353 -9.4569 1.6964 36 1 2.7609 -11.4151 2.7315 37 1 3.9704 -11.1986 1.4429 38 1 1.7061 -9.2727 2.1438 39 1 1.8050 -10.3046 0.6958 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344931062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:31 Heat of formation + Delta-G solvation = -161.352030 kcal Electronic energy + Delta-G solvation = -24590.217740 eV Core-core repulsion = 20817.390511 eV Total energy + Delta-G solvation = -3772.827228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74961 -39.75000 -38.96796 -36.79082 -35.89252 -33.39814 -32.48945 -31.62728 -30.15609 -28.32336 -26.81299 -25.56224 -24.16188 -23.66277 -21.77257 -20.51988 -19.36008 -18.10438 -17.77679 -17.39625 -16.67129 -16.42339 -16.25341 -15.83073 -15.53339 -15.13204 -14.85352 -14.81725 -14.55233 -14.27649 -14.03856 -13.48816 -13.21952 -12.82998 -12.79383 -12.62331 -12.53328 -12.28799 -11.76115 -11.52419 -11.36368 -11.09859 -11.09348 -11.04866 -10.81972 -10.71286 -10.12994 -10.08905 -9.89879 -9.62503 -9.44416 -9.12714 -8.35993 -6.60728 -6.27556 -4.00427 1.93319 2.56785 2.75472 3.01059 3.19628 3.24169 3.29238 3.45605 3.51529 3.75716 3.91406 4.12071 4.14519 4.34354 4.54534 4.57016 4.67241 4.87611 4.93181 5.04458 5.08299 5.08860 5.13730 5.23600 5.27844 5.33464 5.44908 5.55487 5.64547 5.73084 5.76475 5.89776 6.02872 6.40723 6.52984 6.64353 6.81053 7.55085 7.94654 8.06204 8.29948 9.17814 10.79988 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.003156 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.287003 B = 8868.777926 C = 9498.901374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.077 0.923 9 S -0.055 6.055 10 C -0.125 4.125 11 C 0.475 3.525 12 O -0.471 6.471 13 O -0.335 6.335 14 C 0.065 3.935 15 H 0.122 0.878 16 C 0.509 3.491 17 O -0.502 6.502 18 N -0.726 5.726 19 C 0.108 3.892 20 C -0.069 4.069 21 C -0.136 4.136 22 C 0.060 3.940 23 O -0.380 6.380 24 C 0.064 3.936 25 C -0.145 4.145 26 H 0.269 0.731 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.413 0.587 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.479 -22.989 3.362 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.095 0.905 9 S 0.171 5.829 10 C -0.273 4.273 11 C 0.315 3.685 12 O -0.354 6.354 13 O -0.253 6.253 14 C 0.005 3.995 15 H 0.140 0.860 16 C 0.293 3.707 17 O -0.375 6.375 18 N -0.385 5.385 19 C -0.016 4.016 20 C -0.070 4.070 21 C -0.174 4.174 22 C -0.017 4.017 23 O -0.299 6.299 24 C -0.012 4.012 25 C -0.183 4.183 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.252 0.748 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.332 -22.935 3.229 25.361 hybrid contribution 1.828 1.060 -0.801 2.259 sum 12.160 -21.875 2.427 25.145 Atomic orbital electron populations 1.70018 1.05994 1.27565 1.46560 1.25010 0.95064 0.99126 0.94328 0.86064 0.79585 0.81591 0.77952 1.19502 1.20507 1.20484 1.22879 0.95048 0.91130 1.59395 0.90519 1.85508 1.04033 0.96477 1.96861 1.23295 1.07173 0.90350 1.06479 1.23507 0.85491 0.87018 0.72489 1.90702 1.16674 1.84975 1.43036 1.86632 1.40379 1.13365 1.84950 1.23192 1.00287 0.81485 0.94503 0.86018 1.21032 0.80753 0.79203 0.89728 1.90833 1.37050 1.59548 1.50071 1.46157 1.31269 1.44581 1.16450 1.22259 0.93996 1.01734 0.83621 1.21074 0.96033 0.94751 0.95122 1.21965 0.98758 0.98388 0.98281 1.22702 0.92064 0.89484 0.97415 1.87962 1.56461 1.51659 1.33813 1.22607 0.92407 0.92985 0.93240 1.22123 0.98793 0.97003 1.00386 0.92088 0.87764 0.87898 0.74769 0.89727 0.90033 0.88921 0.89788 0.88206 0.92972 0.88275 0.92907 0.89524 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.06 -1.49 20.58 -107.50 -2.21 -3.70 16 10 C -0.13 -2.55 6.27 36.00 0.23 -2.33 16 11 C 0.47 9.27 7.97 36.00 0.29 9.56 16 12 O -0.47 -10.75 15.07 -18.75 -0.28 -11.03 16 13 O -0.34 -5.18 8.41 -39.25 -0.33 -5.51 16 14 C 0.06 0.86 2.70 -27.06 -0.07 0.79 16 15 H 0.12 1.79 6.87 -51.93 -0.36 1.43 16 16 C 0.51 7.32 8.13 -10.74 -0.09 7.23 16 17 O -0.50 -9.74 18.03 5.56 0.10 -9.64 16 18 N -0.73 -6.73 6.25 -59.39 -0.37 -7.10 16 19 C 0.11 0.72 6.05 -3.41 -0.02 0.70 16 20 C -0.07 -0.59 0.58 -154.40 -0.09 -0.68 16 21 C -0.14 -1.11 4.14 -26.96 -0.11 -1.22 16 22 C 0.06 0.39 6.68 37.29 0.25 0.64 16 23 O -0.38 -3.15 10.74 -35.23 -0.38 -3.53 16 24 C 0.06 0.39 6.67 37.29 0.25 0.64 16 25 C -0.15 -1.06 4.80 -26.97 -0.13 -1.19 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.10 1.90 8.14 -51.91 -0.42 1.48 16 28 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16 29 H 0.41 2.99 8.96 -40.82 -0.37 2.63 16 30 H 0.08 0.35 6.36 -51.93 -0.33 0.02 16 31 H 0.08 0.48 7.77 -51.93 -0.40 0.08 16 32 H 0.09 0.76 7.43 -51.93 -0.39 0.37 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.23 6.68 -51.93 -0.35 -0.12 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -36.37 337.00 -7.08 -43.45 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.09 Total: -0.39 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 0.70 Total: 1.36 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.36 Total: -32.26 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.89 Total: -29.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.37 -7.08 -43.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344931062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.902 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds