Wall clock time and date at job start Tue Mar 31 2020 11:31:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86802 * 119.99777 * 2 1
4 4 H 1.48504 * 109.46770 * 180.02562 * 3 2 1
5 5 H 1.48497 * 109.47147 * 300.00483 * 3 2 1
6 6 H 1.48499 * 109.46750 * 60.00781 * 3 2 1
7 7 C 1.38802 * 120.00023 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99402 * 179.97438 * 7 2 1
9 9 S 1.76198 * 119.99861 * 359.97438 * 7 2 1
10 10 C 1.81003 * 99.99788 * 179.97438 * 9 7 2
11 11 C 1.50697 * 109.47280 * 179.97438 * 10 9 7
12 12 O 1.20830 * 119.99749 * 0.02562 * 11 10 9
13 13 O 1.34227 * 120.00241 * 179.97438 * 11 10 9
14 14 C 1.45202 * 117.00000 * 180.02562 * 13 11 10
15 15 H 1.08992 * 110.46104 * 332.62133 * 14 13 11
16 16 C 1.51453 * 110.29803 * 95.44030 * 14 13 11
17 17 O 1.21282 * 124.94939 * 283.18082 * 16 14 13
18 18 N 1.34510 * 110.11493 * 103.34317 * 16 14 13
19 19 C 1.46944 * 111.30180 * 359.19275 * 18 16 14
20 20 C 1.53743 * 105.31360 * 16.60702 * 19 18 16
21 21 C 1.52281 * 110.76105 * 217.21614 * 20 19 18
22 22 C 1.53258 * 109.24301 * 291.40503 * 21 20 19
23 23 O 1.42917 * 109.29662 * 303.77426 * 22 21 20
24 24 C 1.42911 * 114.25117 * 61.82928 * 23 22 21
25 25 C 1.52272 * 110.77724 * 93.57216 * 20 19 18
26 26 H 0.96994 * 120.00269 * 359.97438 * 1 2 3
27 27 H 1.09003 * 109.47026 * 59.99785 * 10 9 7
28 28 H 1.08996 * 109.47346 * 300.00067 * 10 9 7
29 29 H 0.97001 * 124.35273 * 179.46970 * 18 16 14
30 30 H 1.09002 * 110.27599 * 135.56090 * 19 18 16
31 31 H 1.08998 * 110.27819 * 257.55251 * 19 18 16
32 32 H 1.08996 * 109.50496 * 51.33457 * 21 20 19
33 33 H 1.09001 * 109.50197 * 171.47332 * 21 20 19
34 34 H 1.08999 * 109.49304 * 183.83158 * 22 21 20
35 35 H 1.08993 * 109.49856 * 63.72712 * 22 21 20
36 36 H 1.09000 * 109.50005 * 178.21700 * 24 23 22
37 37 H 1.08994 * 109.50299 * 58.10611 * 24 23 22
38 38 H 1.09002 * 109.51062 * 188.50674 * 25 20 19
39 39 H 1.08996 * 109.50703 * 308.65445 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7103 1.3464 -0.0006
5 1 1.8914 2.3965 -1.2124
6 1 1.8915 2.3963 1.2126
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2019 -0.0010
9 16 1.1293 -2.7280 -0.0005
10 6 2.5159 -3.8914 -0.0021
11 6 1.9875 -5.3027 -0.0017
12 8 0.7956 -5.5015 -0.0009
13 8 2.8407 -6.3389 -0.0033
14 6 2.2611 -7.6702 -0.0033
15 1 1.2781 -7.6577 0.4674
16 6 2.1732 -8.2049 -1.4176
17 8 1.3410 -7.8734 -2.2352
18 7 3.1504 -9.1035 -1.6339
19 6 3.9986 -9.2663 -0.4451
20 6 3.1909 -8.6633 0.7157
21 6 4.1072 -7.9348 1.6898
22 6 4.9871 -8.9577 2.4166
23 8 4.1543 -9.9248 3.0597
24 6 3.3376 -10.6836 2.1655
25 6 2.3822 -9.7394 1.4275
26 1 -0.4850 0.8400 0.0004
27 1 3.1252 -3.7317 0.8875
28 1 3.1238 -3.7310 -0.8925
29 1 3.2810 -9.5798 -2.4688
30 1 4.1926 -10.3231 -0.2613
31 1 4.9372 -8.7274 -0.5741
32 1 4.7386 -7.2356 1.1418
33 1 3.5055 -7.3900 2.4173
34 1 5.5963 -8.4481 3.1631
35 1 5.6353 -9.4569 1.6964
36 1 2.7609 -11.4151 2.7315
37 1 3.9704 -11.1986 1.4429
38 1 1.7061 -9.2727 2.1438
39 1 1.8050 -10.3046 0.6958
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001344931062.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:31
Heat of formation + Delta-G solvation = -161.352030 kcal
Electronic energy + Delta-G solvation = -24590.217740 eV
Core-core repulsion = 20817.390511 eV
Total energy + Delta-G solvation = -3772.827228 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.74961 -39.75000 -38.96796 -36.79082 -35.89252 -33.39814 -32.48945 -31.62728
-30.15609 -28.32336 -26.81299 -25.56224 -24.16188 -23.66277 -21.77257 -20.51988
-19.36008 -18.10438 -17.77679 -17.39625 -16.67129 -16.42339 -16.25341 -15.83073
-15.53339 -15.13204 -14.85352 -14.81725 -14.55233 -14.27649 -14.03856 -13.48816
-13.21952 -12.82998 -12.79383 -12.62331 -12.53328 -12.28799 -11.76115 -11.52419
-11.36368 -11.09859 -11.09348 -11.04866 -10.81972 -10.71286 -10.12994 -10.08905
-9.89879 -9.62503 -9.44416 -9.12714 -8.35993 -6.60728 -6.27556 -4.00427
1.93319 2.56785 2.75472 3.01059 3.19628 3.24169 3.29238 3.45605
3.51529 3.75716 3.91406 4.12071 4.14519 4.34354 4.54534 4.57016
4.67241 4.87611 4.93181 5.04458 5.08299 5.08860 5.13730 5.23600
5.27844 5.33464 5.44908 5.55487 5.64547 5.73084 5.76475 5.89776
6.02872 6.40723 6.52984 6.64353 6.81053 7.55085 7.94654 8.06204
8.29948 9.17814 10.79988
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.021797 B = 0.003156 C = 0.002947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.287003 B = 8868.777926 C = 9498.901374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.866 5.866
2 C 0.074 3.926
3 Si 0.922 3.078
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.279 1.279
7 C -0.536 4.536
8 H 0.077 0.923
9 S -0.055 6.055
10 C -0.125 4.125
11 C 0.475 3.525
12 O -0.471 6.471
13 O -0.335 6.335
14 C 0.065 3.935
15 H 0.122 0.878
16 C 0.509 3.491
17 O -0.502 6.502
18 N -0.726 5.726
19 C 0.108 3.892
20 C -0.069 4.069
21 C -0.136 4.136
22 C 0.060 3.940
23 O -0.380 6.380
24 C 0.064 3.936
25 C -0.145 4.145
26 H 0.269 0.731
27 H 0.104 0.896
28 H 0.103 0.897
29 H 0.413 0.587
30 H 0.085 0.915
31 H 0.082 0.918
32 H 0.092 0.908
33 H 0.083 0.917
34 H 0.100 0.900
35 H 0.052 0.948
36 H 0.099 0.901
37 H 0.053 0.947
38 H 0.086 0.914
39 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.479 -22.989 3.362 26.373
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.501 5.501
2 C -0.135 4.135
3 Si 0.748 3.252
4 H -0.195 1.195
5 H -0.205 1.205
6 H -0.205 1.205
7 C -0.685 4.685
8 H 0.095 0.905
9 S 0.171 5.829
10 C -0.273 4.273
11 C 0.315 3.685
12 O -0.354 6.354
13 O -0.253 6.253
14 C 0.005 3.995
15 H 0.140 0.860
16 C 0.293 3.707
17 O -0.375 6.375
18 N -0.385 5.385
19 C -0.016 4.016
20 C -0.070 4.070
21 C -0.174 4.174
22 C -0.017 4.017
23 O -0.299 6.299
24 C -0.012 4.012
25 C -0.183 4.183
26 H 0.079 0.921
27 H 0.122 0.878
28 H 0.121 0.879
29 H 0.252 0.748
30 H 0.103 0.897
31 H 0.100 0.900
32 H 0.111 0.889
33 H 0.102 0.898
34 H 0.118 0.882
35 H 0.070 0.930
36 H 0.117 0.883
37 H 0.071 0.929
38 H 0.105 0.895
39 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 10.332 -22.935 3.229 25.361
hybrid contribution 1.828 1.060 -0.801 2.259
sum 12.160 -21.875 2.427 25.145
Atomic orbital electron populations
1.70018 1.05994 1.27565 1.46560 1.25010 0.95064 0.99126 0.94328
0.86064 0.79585 0.81591 0.77952 1.19502 1.20507 1.20484 1.22879
0.95048 0.91130 1.59395 0.90519 1.85508 1.04033 0.96477 1.96861
1.23295 1.07173 0.90350 1.06479 1.23507 0.85491 0.87018 0.72489
1.90702 1.16674 1.84975 1.43036 1.86632 1.40379 1.13365 1.84950
1.23192 1.00287 0.81485 0.94503 0.86018 1.21032 0.80753 0.79203
0.89728 1.90833 1.37050 1.59548 1.50071 1.46157 1.31269 1.44581
1.16450 1.22259 0.93996 1.01734 0.83621 1.21074 0.96033 0.94751
0.95122 1.21965 0.98758 0.98388 0.98281 1.22702 0.92064 0.89484
0.97415 1.87962 1.56461 1.51659 1.33813 1.22607 0.92407 0.92985
0.93240 1.22123 0.98793 0.97003 1.00386 0.92088 0.87764 0.87898
0.74769 0.89727 0.90033 0.88921 0.89788 0.88206 0.92972 0.88275
0.92907 0.89524 0.90170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16
4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16
7 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16
8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16
9 S -0.06 -1.49 20.58 -107.50 -2.21 -3.70 16
10 C -0.13 -2.55 6.27 36.00 0.23 -2.33 16
11 C 0.47 9.27 7.97 36.00 0.29 9.56 16
12 O -0.47 -10.75 15.07 -18.75 -0.28 -11.03 16
13 O -0.34 -5.18 8.41 -39.25 -0.33 -5.51 16
14 C 0.06 0.86 2.70 -27.06 -0.07 0.79 16
15 H 0.12 1.79 6.87 -51.93 -0.36 1.43 16
16 C 0.51 7.32 8.13 -10.74 -0.09 7.23 16
17 O -0.50 -9.74 18.03 5.56 0.10 -9.64 16
18 N -0.73 -6.73 6.25 -59.39 -0.37 -7.10 16
19 C 0.11 0.72 6.05 -3.41 -0.02 0.70 16
20 C -0.07 -0.59 0.58 -154.40 -0.09 -0.68 16
21 C -0.14 -1.11 4.14 -26.96 -0.11 -1.22 16
22 C 0.06 0.39 6.68 37.29 0.25 0.64 16
23 O -0.38 -3.15 10.74 -35.23 -0.38 -3.53 16
24 C 0.06 0.39 6.67 37.29 0.25 0.64 16
25 C -0.15 -1.06 4.80 -26.97 -0.13 -1.19 16
26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
27 H 0.10 1.90 8.14 -51.91 -0.42 1.48 16
28 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16
29 H 0.41 2.99 8.96 -40.82 -0.37 2.63 16
30 H 0.08 0.35 6.36 -51.93 -0.33 0.02 16
31 H 0.08 0.48 7.77 -51.93 -0.40 0.08 16
32 H 0.09 0.76 7.43 -51.93 -0.39 0.37 16
33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16
34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16
36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.05 0.23 6.68 -51.93 -0.35 -0.12 16
38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
LS Contribution 337.00 15.07 5.08 5.08
Total: -1.00 -36.37 337.00 -7.08 -43.45
By element:
Atomic # 1 Polarization: 4.70 SS G_CDS: -5.09 Total: -0.39 kcal
Atomic # 6 Polarization: 0.66 SS G_CDS: 0.70 Total: 1.36 kcal
Atomic # 7 Polarization: -32.62 SS G_CDS: 0.36 Total: -32.26 kcal
Atomic # 8 Polarization: -28.82 SS G_CDS: -0.89 Total: -29.71 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal
Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -36.37 -7.08 -43.45 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001344931062.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -117.902 kcal
(2) G-P(sol) polarization free energy of solvation -36.371 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.273 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds