Wall clock time and date at job start Tue Mar 31 2020 11:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99777 * 2 1 4 4 H 1.48504 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47147 * 300.00483 * 3 2 1 6 6 H 1.48499 * 109.46750 * 60.00781 * 3 2 1 7 7 C 1.38802 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99402 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99788 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47280 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99749 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00241 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00000 * 180.02562 * 13 11 10 15 15 H 1.08992 * 110.46104 * 332.62133 * 14 13 11 16 16 C 1.51453 * 110.29803 * 95.44030 * 14 13 11 17 17 O 1.21282 * 124.94939 * 283.18082 * 16 14 13 18 18 N 1.34510 * 110.11493 * 103.34317 * 16 14 13 19 19 C 1.46944 * 111.30180 * 359.19275 * 18 16 14 20 20 C 1.53743 * 105.31360 * 16.60702 * 19 18 16 21 21 C 1.52281 * 110.76105 * 217.21614 * 20 19 18 22 22 C 1.53258 * 109.24301 * 291.40503 * 21 20 19 23 23 O 1.42917 * 109.29662 * 303.77426 * 22 21 20 24 24 C 1.42911 * 114.25117 * 61.82928 * 23 22 21 25 25 C 1.52272 * 110.77724 * 93.57216 * 20 19 18 26 26 H 0.96994 * 120.00269 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47026 * 59.99785 * 10 9 7 28 28 H 1.08996 * 109.47346 * 300.00067 * 10 9 7 29 29 H 0.97001 * 124.35273 * 179.46970 * 18 16 14 30 30 H 1.09002 * 110.27599 * 135.56090 * 19 18 16 31 31 H 1.08998 * 110.27819 * 257.55251 * 19 18 16 32 32 H 1.08996 * 109.50496 * 51.33457 * 21 20 19 33 33 H 1.09001 * 109.50197 * 171.47332 * 21 20 19 34 34 H 1.08999 * 109.49304 * 183.83158 * 22 21 20 35 35 H 1.08993 * 109.49856 * 63.72712 * 22 21 20 36 36 H 1.09000 * 109.50005 * 178.21700 * 24 23 22 37 37 H 1.08994 * 109.50299 * 58.10611 * 24 23 22 38 38 H 1.09002 * 109.51062 * 188.50674 * 25 20 19 39 39 H 1.08996 * 109.50703 * 308.65445 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7956 -5.5015 -0.0009 13 8 2.8407 -6.3389 -0.0033 14 6 2.2611 -7.6702 -0.0033 15 1 1.2781 -7.6577 0.4674 16 6 2.1732 -8.2049 -1.4176 17 8 1.3410 -7.8734 -2.2352 18 7 3.1504 -9.1035 -1.6339 19 6 3.9986 -9.2663 -0.4451 20 6 3.1909 -8.6633 0.7157 21 6 4.1072 -7.9348 1.6898 22 6 4.9871 -8.9577 2.4166 23 8 4.1543 -9.9248 3.0597 24 6 3.3376 -10.6836 2.1655 25 6 2.3822 -9.7394 1.4275 26 1 -0.4850 0.8400 0.0004 27 1 3.1252 -3.7317 0.8875 28 1 3.1238 -3.7310 -0.8925 29 1 3.2810 -9.5798 -2.4688 30 1 4.1926 -10.3231 -0.2613 31 1 4.9372 -8.7274 -0.5741 32 1 4.7386 -7.2356 1.1418 33 1 3.5055 -7.3900 2.4173 34 1 5.5963 -8.4481 3.1631 35 1 5.6353 -9.4569 1.6964 36 1 2.7609 -11.4151 2.7315 37 1 3.9704 -11.1986 1.4429 38 1 1.7061 -9.2727 2.1438 39 1 1.8050 -10.3046 0.6958 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344931062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:31 Heat of formation + Delta-G solvation = -189.261938 kcal Electronic energy + Delta-G solvation = -24591.428004 eV Core-core repulsion = 20817.390511 eV Total energy + Delta-G solvation = -3774.037493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.74251 -41.05164 -39.88447 -37.90827 -37.15631 -34.62557 -34.19547 -32.16884 -31.69874 -29.42780 -27.72000 -27.50472 -24.77116 -24.30368 -23.11156 -21.70028 -20.13315 -19.91756 -18.95770 -18.75053 -17.79455 -17.51166 -16.94871 -16.91211 -16.84486 -16.57281 -16.12262 -15.84041 -15.65526 -15.45954 -15.16550 -14.63906 -14.46800 -14.29979 -13.98734 -13.44876 -13.43767 -13.27653 -13.19515 -12.93314 -12.81366 -12.66927 -12.35177 -12.21684 -11.81648 -11.77755 -11.64303 -11.31762 -11.18903 -11.04201 -10.39941 -10.38988 -10.28756 -8.76884 -8.38602 -6.19438 0.62117 0.99897 1.23762 1.42096 1.43164 1.56848 1.85083 2.15652 2.22537 2.92040 2.96607 2.97953 3.04187 3.23003 3.44455 3.51217 3.78673 3.89205 4.01436 4.10124 4.11628 4.22288 4.36468 4.37227 4.53788 4.59547 4.63786 4.72902 4.85871 4.90264 5.02969 5.12863 5.17595 5.25336 5.40019 5.54930 5.77128 6.17099 6.34073 6.52454 6.96333 7.02841 8.71093 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.003156 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.287003 B = 8868.777926 C = 9498.901374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.003 2.997 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.089 0.911 9 S -0.143 6.143 10 C -0.103 4.103 11 C 0.481 3.519 12 O -0.512 6.512 13 O -0.318 6.318 14 C 0.054 3.946 15 H 0.099 0.901 16 C 0.501 3.499 17 O -0.566 6.566 18 N -0.700 5.700 19 C 0.106 3.894 20 C -0.060 4.060 21 C -0.136 4.136 22 C 0.063 3.937 23 O -0.402 6.402 24 C 0.066 3.934 25 C -0.145 4.145 26 H 0.272 0.728 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.426 0.574 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.222 -24.469 3.626 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.824 3.176 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.694 4.694 8 H 0.107 0.893 9 S 0.084 5.916 10 C -0.251 4.251 11 C 0.323 3.677 12 O -0.398 6.398 13 O -0.234 6.234 14 C -0.005 4.005 15 H 0.117 0.883 16 C 0.284 3.716 17 O -0.444 6.444 18 N -0.357 5.357 19 C -0.017 4.017 20 C -0.061 4.061 21 C -0.174 4.174 22 C -0.014 4.014 23 O -0.321 6.321 24 C -0.011 4.011 25 C -0.182 4.182 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.138 0.862 29 H 0.268 0.732 30 H 0.145 0.855 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.151 -24.479 3.508 28.492 hybrid contribution 0.708 1.335 -0.854 1.736 sum 14.859 -23.144 2.654 27.631 Atomic orbital electron populations 1.70180 1.08053 1.28771 1.47746 1.26167 0.95989 1.03416 0.93491 0.84846 0.78677 0.75980 0.78078 1.17769 1.20060 1.19778 1.23224 0.95563 0.91276 1.59296 0.89309 1.85689 1.09326 0.99362 1.97179 1.23074 1.04308 0.89174 1.08547 1.23302 0.85073 0.87691 0.71623 1.90697 1.18457 1.85647 1.45011 1.86575 1.38958 1.13787 1.84119 1.23547 1.00932 0.80916 0.95102 0.88283 1.21203 0.81071 0.79885 0.89407 1.90799 1.39797 1.62063 1.51728 1.46095 1.29492 1.42287 1.17843 1.22619 0.93464 1.04491 0.81080 1.21171 0.95422 0.93659 0.95834 1.21972 0.98650 0.98959 0.97790 1.22790 0.91638 0.88937 0.98010 1.87948 1.56932 1.52076 1.35148 1.22750 0.92326 0.92402 0.93586 1.22149 0.98974 0.96900 1.00220 0.91849 0.85062 0.86153 0.73195 0.85541 0.87889 0.88618 0.92136 0.87619 0.90083 0.87284 0.90071 0.91380 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.22 21.65 0.29 -55.48 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -30.87 9.50 67.95 0.65 -30.23 16 8 H 0.09 4.63 7.80 -2.91 -0.02 4.60 16 9 S -0.14 -7.93 20.58 -56.49 -1.16 -9.10 16 10 C -0.10 -4.19 6.27 71.24 0.45 -3.75 16 11 C 0.48 19.24 7.97 71.24 0.57 19.81 16 12 O -0.51 -24.67 15.07 21.95 0.33 -24.34 16 13 O -0.32 -9.76 8.41 -51.38 -0.43 -10.19 16 14 C 0.05 1.45 2.70 30.38 0.08 1.54 16 15 H 0.10 3.12 6.87 -2.39 -0.02 3.11 16 16 C 0.50 14.34 8.13 87.94 0.72 15.06 16 17 O -0.57 -22.86 18.03 -3.04 -0.05 -22.92 16 18 N -0.70 -11.23 6.25 -460.34 -2.88 -14.10 16 19 C 0.11 0.97 6.05 86.55 0.52 1.50 16 20 C -0.06 -0.91 0.58 -52.11 -0.03 -0.94 16 21 C -0.14 -1.94 4.14 30.44 0.13 -1.81 16 22 C 0.06 0.61 6.68 72.07 0.48 1.09 16 23 O -0.40 -5.48 10.74 -148.98 -1.60 -7.08 16 24 C 0.07 0.57 6.67 72.07 0.48 1.05 16 25 C -0.14 -1.85 4.80 30.44 0.15 -1.71 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.13 4.64 8.14 -2.39 -0.02 4.62 16 28 H 0.12 4.51 8.14 -2.40 -0.02 4.49 16 29 H 0.43 4.97 8.96 -92.71 -0.83 4.14 16 30 H 0.13 0.25 6.36 -2.39 -0.02 0.24 16 31 H 0.10 0.66 7.77 -2.39 -0.02 0.65 16 32 H 0.10 1.30 7.43 -2.39 -0.02 1.29 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.35 7.66 -2.39 -0.02 0.33 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.26 6.68 -2.39 -0.02 0.25 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -84.30 337.00 1.43 -82.87 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.26 Total: 12.22 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.65 Total: 2.87 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -2.59 Total: -69.58 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -1.76 Total: -64.52 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.10 kcal Total: -84.30 1.43 -82.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344931062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.387 kcal (2) G-P(sol) polarization free energy of solvation -84.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds