Wall clock time and date at job start Tue Mar 31 2020 11:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76202 * 103.00318 * 2 1 4 4 C 1.39546 * 119.64913 * 179.72757 * 3 2 1 5 5 C 1.38224 * 119.29606 * 179.75335 * 4 3 2 6 6 C 1.38855 * 118.59047 * 0.51442 * 5 4 3 7 7 C 1.39125 * 119.23806 * 359.72478 * 6 5 4 8 8 C 1.48097 * 119.68387 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99832 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00539 * 180.02562 * 8 7 6 11 11 C 1.39367 * 120.00345 * 175.13697 * 10 8 7 12 12 C 1.38623 * 119.58110 * 184.94266 * 11 10 8 13 13 C 1.40804 * 118.79179 * 179.71854 * 12 11 10 14 14 C 1.41544 * 120.99706 * 180.29748 * 13 12 11 15 15 H 1.08004 * 120.00067 * 203.89737 * 14 13 12 16 16 C 1.40026 * 119.99682 * 23.90584 * 14 13 12 17 17 N 1.30742 * 120.00363 * 16.80174 * 16 14 13 18 18 Si 1.86807 * 119.99902 * 196.80320 * 16 14 13 19 19 H 1.48496 * 109.46916 * 94.66141 * 18 16 14 20 20 H 1.48497 * 109.47338 * 214.66118 * 18 16 14 21 21 H 1.48501 * 109.46790 * 334.66397 * 18 16 14 22 22 C 1.41179 * 118.00907 * 0.53886 * 13 12 11 23 23 C 1.37595 * 119.01951 * 359.74002 * 22 13 12 24 24 N 1.32073 * 121.11005 * 359.97438 * 23 22 13 25 25 N 1.32130 * 119.63937 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.47492 * 299.99903 * 1 2 3 27 27 H 1.09004 * 109.47264 * 60.00198 * 1 2 3 28 28 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.35240 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.70794 * 180.24132 * 5 4 3 31 31 H 1.08004 * 120.38493 * 179.74979 * 6 5 4 32 32 H 0.97000 * 119.99615 * 355.13353 * 10 8 7 33 33 H 1.07994 * 120.60461 * 0.02562 * 12 11 10 34 34 H 0.97001 * 120.00306 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.49378 * 179.75918 * 22 13 12 36 36 H 1.08001 * 119.44411 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5474 2.1166 0.0058 5 6 3.8501 3.4652 0.0005 6 6 2.8060 4.3806 0.0006 7 6 1.4947 3.9158 0.0001 8 6 0.3736 4.8834 -0.0004 9 8 0.6012 6.0771 -0.0009 10 7 -0.8993 4.4402 -0.0004 11 6 -1.9529 5.3467 0.1014 12 6 -3.2528 4.8764 0.2042 13 6 -4.3041 5.8068 0.3123 14 6 -5.6482 5.3781 0.4260 15 1 -6.4517 6.0350 0.1274 16 6 -5.9361 4.1022 0.9260 17 7 -5.0239 3.4373 1.5857 18 14 -7.6236 3.3499 0.6503 19 1 -7.5901 2.4887 -0.5590 20 1 -7.9994 2.5311 1.8307 21 1 -8.6228 4.4319 0.4599 22 6 -3.9778 7.1804 0.2986 23 6 -2.6577 7.5518 0.1867 24 7 -1.6999 6.6472 0.0933 25 7 1.2385 2.6119 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.3372 1.3799 0.0098 30 1 4.8769 3.8000 0.0009 31 1 3.0094 5.4413 0.0007 32 1 -1.0820 3.4902 -0.0714 33 1 -3.4551 3.8156 0.2065 34 1 -5.2234 2.5536 1.9323 35 1 -4.7529 7.9285 0.3751 36 1 -2.4004 8.6006 0.1751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361538287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:04 Heat of formation + Delta-G solvation = 38.665806 kcal Electronic energy + Delta-G solvation = -22570.507896 eV Core-core repulsion = 19145.955762 eV Total energy + Delta-G solvation = -3424.552133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53762 -39.14511 -37.63828 -34.44205 -33.85707 -32.76671 -31.58050 -30.56477 -28.97096 -28.61456 -26.03803 -24.81869 -23.89996 -22.05495 -21.72448 -20.03358 -18.38857 -17.71376 -17.12629 -16.26650 -16.22222 -15.43439 -15.23300 -15.09629 -14.53953 -14.24523 -14.11390 -14.06139 -13.75561 -13.60139 -13.31388 -12.90228 -12.69331 -12.63671 -12.29778 -12.11317 -11.47640 -11.26127 -10.94733 -10.86367 -10.34005 -10.29722 -10.20168 -10.02354 -9.88353 -9.76259 -9.52896 -9.38660 -8.04484 -7.79394 -7.77055 -7.07011 -6.84738 -4.64538 0.54522 0.93962 1.27698 2.06883 2.50399 2.75372 2.99743 3.03454 3.07771 3.26891 3.43346 3.82157 3.91098 4.22738 4.63988 4.65803 4.80735 4.88063 5.06284 5.15168 5.18497 5.30274 5.64802 5.71078 5.76040 5.88138 6.00588 6.29807 6.54779 6.61706 6.77025 6.91086 7.06776 7.33117 7.35534 7.42742 7.74840 7.89905 8.16557 8.36391 8.64651 8.70738 8.78858 9.64029 10.03033 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003962 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.235039 B = 7065.455386 C = 9041.428885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.083 6.083 3 C 0.119 3.881 4 C -0.136 4.136 5 C -0.064 4.064 6 C -0.120 4.120 7 C 0.106 3.894 8 C 0.554 3.446 9 O -0.470 6.470 10 N -0.636 5.636 11 C 0.334 3.666 12 C -0.239 4.239 13 C 0.144 3.856 14 C -0.455 4.455 15 H 0.083 0.917 16 C 0.079 3.921 17 N -0.786 5.786 18 Si 0.911 3.089 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.283 4.283 23 C 0.120 3.880 24 N -0.556 5.556 25 N -0.467 5.467 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.415 0.585 33 H 0.128 0.872 34 H 0.282 0.718 35 H 0.103 0.897 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.460 -8.680 -2.301 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.156 5.844 3 C -0.132 4.132 4 C -0.162 4.162 5 C -0.092 4.092 6 C -0.144 4.144 7 C -0.035 4.035 8 C 0.337 3.663 9 O -0.339 6.339 10 N -0.282 5.282 11 C 0.110 3.890 12 C -0.265 4.265 13 C 0.135 3.865 14 C -0.486 4.486 15 H 0.101 0.899 16 C -0.141 4.141 17 N -0.411 5.411 18 Si 0.735 3.265 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.307 4.307 23 C -0.034 4.034 24 N -0.276 5.276 25 N -0.183 5.183 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.252 0.748 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.337 -9.054 -2.226 16.273 hybrid contribution -1.715 0.097 0.093 1.720 sum 11.622 -8.957 -2.133 14.828 Atomic orbital electron populations 1.23521 0.92728 1.06407 1.07371 1.85383 1.08869 0.98510 1.91662 1.23054 0.91982 0.98289 0.99852 1.21809 0.95677 0.97094 1.01586 1.21523 0.99996 0.92136 0.95504 1.22121 0.91751 1.02317 0.98192 1.21433 0.94043 0.89857 0.98181 1.17914 0.82332 0.87386 0.78704 1.90875 1.83338 1.14555 1.45110 1.43203 1.04185 1.10412 1.70351 1.18170 0.85334 0.87911 0.97628 1.21542 0.89791 1.01200 1.13946 1.17561 0.93158 0.90173 0.85581 1.19604 0.92571 0.99051 1.37377 0.89864 1.25964 0.99306 0.96659 0.92157 1.69783 1.35264 1.12202 1.23873 0.86243 0.81774 0.79611 0.78822 1.19206 1.20156 1.18397 1.21901 0.96295 0.96474 1.16060 1.21759 0.88802 0.96801 0.96079 1.67202 1.36367 0.99767 1.24215 1.67974 1.35286 1.01791 1.13205 0.88931 0.89129 0.87730 0.83961 0.83561 0.83031 0.74829 0.85414 0.90677 0.87896 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 10.01 101.05 1.01 -0.32 16 2 S -0.08 -0.88 22.55 -107.50 -2.42 -3.30 16 3 C 0.12 1.51 7.00 -16.94 -0.12 1.39 16 4 C -0.14 -1.39 9.84 -39.10 -0.38 -1.78 16 5 C -0.06 -0.64 10.16 -39.36 -0.40 -1.04 16 6 C -0.12 -1.58 9.63 -39.02 -0.38 -1.96 16 7 C 0.11 1.72 6.74 -83.04 -0.56 1.16 16 8 C 0.55 11.23 7.77 -12.21 -0.09 11.13 16 9 O -0.47 -10.87 14.56 5.35 0.08 -10.79 16 10 N -0.64 -13.41 5.37 -12.28 -0.07 -13.48 16 11 C 0.33 8.27 7.41 -154.78 -1.15 7.13 16 12 C -0.24 -6.13 8.62 -38.47 -0.33 -6.46 16 13 C 0.14 3.77 5.60 -106.55 -0.60 3.17 16 14 C -0.46 -11.63 9.12 -37.65 -0.34 -11.97 16 15 H 0.08 2.04 7.90 -52.48 -0.41 1.62 16 16 C 0.08 1.88 5.20 -17.35 -0.09 1.79 16 17 N -0.79 -19.27 10.93 55.55 0.61 -18.67 16 18 Si 0.91 17.75 29.59 -169.99 -5.03 12.72 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 C -0.28 -6.94 9.90 -38.70 -0.38 -7.33 16 23 C 0.12 2.88 11.15 -17.68 -0.20 2.68 16 24 N -0.56 -14.30 7.85 -12.54 -0.10 -14.40 16 25 N -0.47 -6.98 8.61 -8.67 -0.07 -7.05 16 26 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 27 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.15 1.92 7.63 -52.48 -0.40 1.52 16 32 H 0.42 7.78 8.03 -40.82 -0.33 7.45 16 33 H 0.13 3.25 6.20 -52.49 -0.33 2.92 16 34 H 0.28 6.24 8.29 -40.82 -0.34 5.91 16 35 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -30.88 333.65 -9.55 -40.43 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -3.56 Total: 11.90 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -4.01 Total: -2.40 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.37 Total: -53.59 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.42 Total: -3.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.88 -9.55 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361538287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.098 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds