Wall clock time and date at job start Tue Mar 31 2020 11:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76202 * 103.00318 * 2 1 4 4 C 1.39546 * 119.64913 * 179.72757 * 3 2 1 5 5 C 1.38224 * 119.29606 * 179.75335 * 4 3 2 6 6 C 1.38855 * 118.59047 * 0.51442 * 5 4 3 7 7 C 1.39125 * 119.23806 * 359.72478 * 6 5 4 8 8 C 1.48097 * 119.68387 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99832 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00539 * 180.02562 * 8 7 6 11 11 C 1.39367 * 120.00345 * 175.13697 * 10 8 7 12 12 C 1.38623 * 119.58110 * 184.94266 * 11 10 8 13 13 C 1.40804 * 118.79179 * 179.71854 * 12 11 10 14 14 C 1.41544 * 120.99706 * 180.29748 * 13 12 11 15 15 H 1.08004 * 120.00067 * 203.89737 * 14 13 12 16 16 C 1.40026 * 119.99682 * 23.90584 * 14 13 12 17 17 N 1.30742 * 120.00363 * 16.80174 * 16 14 13 18 18 Si 1.86807 * 119.99902 * 196.80320 * 16 14 13 19 19 H 1.48496 * 109.46916 * 94.66141 * 18 16 14 20 20 H 1.48497 * 109.47338 * 214.66118 * 18 16 14 21 21 H 1.48501 * 109.46790 * 334.66397 * 18 16 14 22 22 C 1.41179 * 118.00907 * 0.53886 * 13 12 11 23 23 C 1.37595 * 119.01951 * 359.74002 * 22 13 12 24 24 N 1.32073 * 121.11005 * 359.97438 * 23 22 13 25 25 N 1.32130 * 119.63937 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.47492 * 299.99903 * 1 2 3 27 27 H 1.09004 * 109.47264 * 60.00198 * 1 2 3 28 28 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.35240 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.70794 * 180.24132 * 5 4 3 31 31 H 1.08004 * 120.38493 * 179.74979 * 6 5 4 32 32 H 0.97000 * 119.99615 * 355.13353 * 10 8 7 33 33 H 1.07994 * 120.60461 * 0.02562 * 12 11 10 34 34 H 0.97001 * 120.00306 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.49378 * 179.75918 * 22 13 12 36 36 H 1.08001 * 119.44411 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5474 2.1166 0.0058 5 6 3.8501 3.4652 0.0005 6 6 2.8060 4.3806 0.0006 7 6 1.4947 3.9158 0.0001 8 6 0.3736 4.8834 -0.0004 9 8 0.6012 6.0771 -0.0009 10 7 -0.8993 4.4402 -0.0004 11 6 -1.9529 5.3467 0.1014 12 6 -3.2528 4.8764 0.2042 13 6 -4.3041 5.8068 0.3123 14 6 -5.6482 5.3781 0.4260 15 1 -6.4517 6.0350 0.1274 16 6 -5.9361 4.1022 0.9260 17 7 -5.0239 3.4373 1.5857 18 14 -7.6236 3.3499 0.6503 19 1 -7.5901 2.4887 -0.5590 20 1 -7.9994 2.5311 1.8307 21 1 -8.6228 4.4319 0.4599 22 6 -3.9778 7.1804 0.2986 23 6 -2.6577 7.5518 0.1867 24 7 -1.6999 6.6472 0.0933 25 7 1.2385 2.6119 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.3372 1.3799 0.0098 30 1 4.8769 3.8000 0.0009 31 1 3.0094 5.4413 0.0007 32 1 -1.0820 3.4902 -0.0714 33 1 -3.4551 3.8156 0.2065 34 1 -5.2234 2.5536 1.9323 35 1 -4.7529 7.9285 0.3751 36 1 -2.4004 8.6006 0.1751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361538287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:03 Heat of formation + Delta-G solvation = 20.480328 kcal Electronic energy + Delta-G solvation = -22571.296477 eV Core-core repulsion = 19145.955762 eV Total energy + Delta-G solvation = -3425.340715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81233 -40.67112 -39.34367 -36.23333 -35.62244 -33.77553 -32.72823 -32.42295 -30.41508 -29.77669 -27.95779 -26.07787 -24.86376 -23.90558 -23.30993 -21.65708 -19.71385 -19.49542 -18.28799 -17.77828 -17.15902 -16.98635 -16.73001 -16.52082 -16.11197 -15.93002 -15.49767 -15.26014 -15.18124 -14.75966 -14.42023 -14.39818 -14.32176 -14.04491 -13.54438 -13.21771 -13.00481 -12.94952 -12.69035 -12.16793 -11.92478 -11.83101 -11.59234 -11.33440 -11.21279 -11.19313 -10.84769 -10.81293 -10.00078 -9.69165 -8.94092 -8.68955 -8.62317 -6.59918 -0.52334 0.01582 0.41486 0.74061 0.96226 1.19894 1.39733 1.52829 1.53587 1.76115 1.93507 2.18254 2.63948 2.80181 3.01812 3.69110 3.70965 3.86094 3.98504 4.11457 4.22064 4.28437 4.33455 4.39432 4.69944 4.77195 4.86927 4.91968 4.93489 5.02325 5.03164 5.18765 5.40513 5.43716 5.56222 5.85310 6.01955 6.29737 6.47730 6.50544 6.75270 6.79220 7.09445 7.75194 8.23266 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003962 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.235039 B = 7065.455386 C = 9041.428885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.057 6.057 3 C 0.096 3.904 4 C -0.119 4.119 5 C -0.048 4.048 6 C -0.121 4.121 7 C 0.075 3.925 8 C 0.552 3.448 9 O -0.507 6.507 10 N -0.636 5.636 11 C 0.329 3.671 12 C -0.258 4.258 13 C 0.116 3.884 14 C -0.483 4.483 15 H 0.087 0.913 16 C 0.040 3.960 17 N -0.811 5.811 18 Si 0.988 3.012 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.297 4.297 23 C 0.115 3.885 24 N -0.580 5.580 25 N -0.485 5.485 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.180 0.820 30 H 0.194 0.806 31 H 0.152 0.848 32 H 0.422 0.578 33 H 0.122 0.878 34 H 0.293 0.707 35 H 0.119 0.881 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.698 -10.502 -2.373 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.181 5.819 3 C -0.155 4.155 4 C -0.145 4.145 5 C -0.075 4.075 6 C -0.145 4.145 7 C -0.065 4.065 8 C 0.338 3.662 9 O -0.379 6.379 10 N -0.281 5.281 11 C 0.104 3.896 12 C -0.284 4.284 13 C 0.107 3.893 14 C -0.513 4.513 15 H 0.105 0.895 16 C -0.177 4.177 17 N -0.436 5.436 18 Si 0.808 3.192 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.180 1.180 22 C -0.320 4.320 23 C -0.038 4.038 24 N -0.300 5.300 25 N -0.202 5.202 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.147 0.853 29 H 0.197 0.803 30 H 0.211 0.789 31 H 0.169 0.831 32 H 0.260 0.740 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.599 -10.884 -2.297 18.354 hybrid contribution -1.983 0.566 0.143 2.067 sum 12.616 -10.318 -2.153 16.440 Atomic orbital electron populations 1.23563 0.92987 1.07635 1.06203 1.85228 1.08600 0.96733 1.91319 1.23612 0.92939 0.98880 1.00079 1.22325 0.95410 0.98142 0.98610 1.22002 1.01081 0.91259 0.93157 1.22280 0.91339 1.03156 0.97683 1.20870 0.93391 0.89828 1.02415 1.18569 0.82711 0.87911 0.77036 1.90825 1.83939 1.16365 1.46760 1.43241 1.04183 1.10299 1.70426 1.18416 0.86182 0.88292 0.96709 1.21511 0.90343 1.00847 1.15686 1.17989 0.93959 0.91213 0.86098 1.19911 0.92470 1.00544 1.38398 0.89511 1.26857 1.03464 0.96337 0.91085 1.69823 1.37346 1.12796 1.23652 0.85097 0.76398 0.78652 0.79042 1.18496 1.19091 1.18010 1.22103 0.97048 0.96336 1.16549 1.22259 0.88575 0.98033 0.94969 1.67327 1.37040 1.00283 1.25337 1.67827 1.36730 1.01559 1.14055 0.90361 0.90023 0.85341 0.80258 0.78935 0.83073 0.73977 0.86051 0.89618 0.86274 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.01 113.37 1.14 -1.53 16 2 S -0.06 -1.11 22.55 -56.49 -1.27 -2.38 16 3 C 0.10 2.27 7.00 84.96 0.59 2.86 16 4 C -0.12 -2.01 9.84 22.58 0.22 -1.79 16 5 C -0.05 -0.78 10.16 22.41 0.23 -0.55 16 6 C -0.12 -3.04 9.63 22.63 0.22 -2.83 16 7 C 0.07 2.45 6.74 41.82 0.28 2.73 16 8 C 0.55 23.36 7.77 86.86 0.67 24.04 16 9 O -0.51 -24.46 14.56 -3.79 -0.06 -24.52 16 10 N -0.64 -28.21 5.37 -311.06 -1.67 -29.88 16 11 C 0.33 17.07 7.41 132.79 0.98 18.05 16 12 C -0.26 -13.82 8.62 22.99 0.20 -13.63 16 13 C 0.12 6.28 5.60 -21.11 -0.12 6.16 16 14 C -0.48 -25.18 9.12 23.52 0.21 -24.96 16 15 H 0.09 4.31 7.90 -2.91 -0.02 4.28 16 16 C 0.04 1.93 5.20 85.29 0.44 2.37 16 17 N -0.81 -40.33 10.93 21.84 0.24 -40.09 16 18 Si 0.99 35.95 29.59 68.60 2.03 37.98 16 19 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 20 H -0.27 -9.20 7.11 99.48 0.71 -8.50 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 22 C -0.30 -14.91 9.90 22.84 0.23 -14.68 16 23 C 0.12 5.66 11.15 84.50 0.94 6.60 16 24 N -0.58 -30.85 7.85 -193.58 -1.52 -32.36 16 25 N -0.49 -14.50 8.61 -181.35 -1.56 -16.06 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 31 H 0.15 3.76 7.63 -2.91 -0.02 3.74 16 32 H 0.42 16.84 8.03 -92.71 -0.74 16.09 16 33 H 0.12 6.49 6.20 -2.91 -0.02 6.47 16 34 H 0.29 12.97 8.29 -92.71 -0.77 12.20 16 35 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 36 H 0.15 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -69.79 333.65 2.83 -66.96 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: 0.39 Total: 37.50 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.25 Total: 2.85 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -4.51 Total: -118.39 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.27 Total: -2.38 kcal Total: -69.79 2.83 -66.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361538287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.444 kcal (2) G-P(sol) polarization free energy of solvation -69.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds