Wall clock time and date at job start Tue Mar 31 2020 11:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 100.00036 * 2 1 4 4 C 1.39760 * 120.49519 * 180.02562 * 3 2 1 5 5 C 1.38061 * 118.46559 * 179.97438 * 4 3 2 6 6 N 1.32542 * 119.28923 * 359.97438 * 5 4 3 7 7 C 1.32404 * 120.95776 * 0.02562 * 6 5 4 8 8 N 1.38832 * 119.16566 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00283 * 359.97438 * 8 7 6 10 10 O 1.21536 * 119.99833 * 359.97438 * 9 8 7 11 11 C 1.47842 * 120.00283 * 179.72884 * 9 8 7 12 12 C 1.39936 * 120.02772 * 359.97438 * 11 9 8 13 13 C 1.38320 * 120.35755 * 179.69839 * 12 11 9 14 14 C 1.37758 * 120.41186 * 0.60589 * 13 12 11 15 15 C 1.40760 * 120.04430 * 359.67111 * 14 13 12 16 16 C 1.41435 * 120.17294 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99793 * 150.18016 * 16 15 14 18 18 C 1.39927 * 120.00532 * 330.17911 * 16 15 14 19 19 N 1.30827 * 120.00079 * 161.73278 * 18 16 15 20 20 Si 1.86809 * 119.99930 * 341.73151 * 18 16 15 21 21 H 1.48493 * 109.46928 * 95.41231 * 20 18 16 22 22 H 1.48504 * 109.47130 * 215.41332 * 20 18 16 23 23 H 1.48497 * 109.46776 * 335.41195 * 20 18 16 24 24 C 1.39020 * 120.02673 * 180.27938 * 11 9 8 25 25 N 1.32387 * 121.67033 * 0.27269 * 7 6 5 26 26 H 1.08998 * 109.46704 * 299.99793 * 1 2 3 27 27 H 1.09001 * 109.46933 * 59.99674 * 1 2 3 28 28 H 1.08991 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.77019 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.35790 * 180.02562 * 5 4 3 31 31 H 0.97007 * 120.00321 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.81891 * 359.97438 * 12 11 9 33 33 H 1.08000 * 119.79479 * 180.30056 * 13 12 11 34 34 H 1.08003 * 119.97887 * 179.70302 * 14 13 12 35 35 H 0.97008 * 119.99666 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.20000 * 359.97173 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4252 2.2246 -0.0005 5 6 3.6166 3.5919 -0.0011 6 7 2.5617 4.3943 -0.0016 7 6 1.3322 3.9030 -0.0010 8 7 0.2541 4.7777 -0.0010 9 6 0.4660 6.1086 -0.0010 10 8 1.6011 6.5432 -0.0006 11 6 -0.6820 7.0401 -0.0071 12 6 -1.9891 6.5404 -0.0134 13 6 -3.0683 7.4056 -0.0128 14 6 -2.8692 8.7687 -0.0186 15 6 -1.5617 9.2900 -0.0181 16 6 -1.3542 10.6890 -0.0235 17 1 -0.4731 11.1060 0.4416 18 6 -2.2902 11.5330 -0.6315 19 7 -2.3052 12.8089 -0.3428 20 14 -3.5185 10.8377 -1.8553 21 1 -4.7919 10.5283 -1.1570 22 1 -3.7705 11.8363 -2.9252 23 1 -2.9692 9.5960 -2.4566 24 6 -0.4639 8.4130 -0.0130 25 7 1.1049 2.5988 0.0053 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 4.2676 1.5488 -0.0005 30 1 4.6152 4.0032 -0.0019 31 1 -0.6519 4.4309 -0.0003 32 1 -2.1562 5.4734 -0.0142 33 1 -4.0733 7.0101 -0.0128 34 1 -3.7170 9.4379 -0.0229 35 1 -2.9544 13.3939 -0.7640 36 1 0.5431 8.8031 -0.0127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361893242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:06 Heat of formation + Delta-G solvation = 51.590655 kcal Electronic energy + Delta-G solvation = -22232.106990 eV Core-core repulsion = 18808.115320 eV Total energy + Delta-G solvation = -3423.991670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23926 -39.38910 -37.43323 -34.93745 -33.85582 -33.75853 -31.47714 -30.42238 -29.98540 -29.24164 -25.53246 -25.10905 -24.45627 -22.74007 -20.80812 -20.48035 -18.91188 -18.29329 -17.13344 -16.58926 -16.22725 -15.82312 -15.72973 -15.45434 -14.78277 -14.57107 -14.26120 -14.12442 -13.92307 -13.74291 -13.66671 -12.89198 -12.82342 -12.71630 -12.13435 -11.75397 -11.37233 -11.34104 -11.11102 -11.10573 -11.01306 -10.84783 -10.60900 -10.08737 -9.84914 -9.67032 -9.31994 -8.98178 -8.96963 -8.07761 -7.96975 -7.85770 -7.07419 -4.62892 0.75117 0.87494 1.08204 1.74710 1.81284 2.43086 2.70321 3.00376 3.12835 3.19664 3.34348 3.81640 3.87662 4.09851 4.40134 4.48601 4.73373 4.84661 4.90902 4.99980 5.21281 5.25375 5.33811 5.51635 5.75863 5.88154 5.93268 6.28378 6.37537 6.54080 6.56778 6.77994 6.89289 7.05662 7.20770 7.31994 7.39988 7.66966 7.83247 8.12068 8.20692 8.43092 8.45307 8.63363 9.94381 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.002796 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.203082 B =10013.282501 C =10770.050317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.051 6.051 3 C 0.189 3.811 4 C -0.251 4.251 5 C 0.191 3.809 6 N -0.506 5.506 7 C 0.562 3.438 8 N -0.639 5.639 9 C 0.559 3.441 10 O -0.469 6.469 11 C -0.107 4.107 12 C -0.219 4.219 13 C -0.080 4.080 14 C -0.220 4.220 15 C 0.082 3.918 16 C -0.439 4.439 17 H 0.095 0.905 18 C 0.083 3.917 19 N -0.800 5.800 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.243 1.243 24 C -0.131 4.131 25 N -0.561 5.561 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.149 0.851 30 H 0.175 0.825 31 H 0.422 0.578 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.288 0.712 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -21.561 -0.549 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.186 5.814 3 C -0.070 4.070 4 C -0.282 4.282 5 C 0.023 3.977 6 N -0.228 5.228 7 C 0.203 3.797 8 N -0.289 5.289 9 C 0.348 3.652 10 O -0.338 6.338 11 C -0.110 4.110 12 C -0.239 4.239 13 C -0.098 4.098 14 C -0.240 4.240 15 C 0.079 3.921 16 C -0.467 4.467 17 H 0.113 0.887 18 C -0.137 4.137 19 N -0.423 5.423 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.215 1.215 23 H -0.166 1.166 24 C -0.151 4.151 25 N -0.287 5.287 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.167 0.833 30 H 0.192 0.808 31 H 0.262 0.738 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.655 -21.174 -0.549 21.687 hybrid contribution -1.327 0.127 -0.484 1.418 sum 3.328 -21.047 -1.033 21.334 Atomic orbital electron populations 1.23478 0.93473 1.06210 1.07391 1.85750 1.08485 0.96677 1.90529 1.23203 0.91466 0.98569 0.93765 1.22270 0.96977 0.98118 1.10833 1.23162 0.98171 0.88894 0.87432 1.68658 0.97615 1.38848 1.17687 1.19499 0.86784 0.84584 0.88800 1.43472 1.07772 1.05845 1.71808 1.19077 0.90343 0.80268 0.75516 1.90827 1.23455 1.75895 1.43622 1.19241 0.91001 0.93195 1.07570 1.20377 0.91655 0.97200 1.14703 1.20503 0.96968 0.93492 0.98817 1.21210 0.96771 0.94507 1.11471 1.17681 0.90678 0.93672 0.90093 1.19538 1.07201 0.89161 1.30826 0.88697 1.26184 0.96579 0.94544 0.96381 1.69689 1.31969 1.05562 1.35099 0.86310 0.80103 0.80023 0.79896 1.19464 1.21545 1.16637 1.21273 0.98951 0.90330 1.04513 1.68076 1.34878 1.02310 1.23417 0.89009 0.89023 0.87928 0.83285 0.80785 0.73812 0.88591 0.88066 0.87727 0.90192 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.68 101.05 0.98 -0.03 16 2 S -0.05 -0.45 22.74 -107.50 -2.44 -2.90 16 3 C 0.19 2.24 7.01 -16.49 -0.12 2.12 16 4 C -0.25 -2.65 9.94 -39.08 -0.39 -3.04 16 5 C 0.19 2.34 11.28 -17.31 -0.20 2.15 16 6 N -0.51 -8.52 7.86 -13.94 -0.11 -8.63 16 7 C 0.56 9.14 8.38 -322.44 -2.70 6.44 16 8 N -0.64 -10.49 5.35 -13.96 -0.07 -10.57 16 9 C 0.56 11.08 7.73 -12.33 -0.10 10.98 16 10 O -0.47 -10.55 14.52 5.33 0.08 -10.48 16 11 C -0.11 -2.22 5.87 -105.04 -0.62 -2.84 16 12 C -0.22 -4.11 9.55 -38.92 -0.37 -4.48 16 13 C -0.08 -1.57 10.01 -39.73 -0.40 -1.96 16 14 C -0.22 -4.98 7.17 -38.80 -0.28 -5.26 16 15 C 0.08 2.01 5.10 -106.87 -0.55 1.46 16 16 C -0.44 -11.54 9.57 -37.73 -0.36 -11.90 16 17 H 0.10 2.62 8.06 -52.48 -0.42 2.20 16 18 C 0.08 2.10 5.40 -17.35 -0.09 2.01 16 19 N -0.80 -20.68 13.93 55.55 0.77 -19.90 16 20 Si 0.91 19.88 24.52 -169.99 -4.17 15.72 16 21 H -0.27 -5.61 6.71 56.52 0.38 -5.23 16 22 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.24 -5.44 6.86 56.52 0.39 -5.05 16 24 C -0.13 -3.05 9.34 -38.44 -0.36 -3.41 16 25 N -0.56 -7.77 9.32 -12.63 -0.12 -7.89 16 26 H 0.09 0.73 8.13 -51.92 -0.42 0.31 16 27 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.42 5.82 6.83 -40.82 -0.28 5.54 16 32 H 0.10 1.44 6.38 -52.49 -0.33 1.10 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.11 2.34 4.72 -52.48 -0.25 2.10 16 35 H 0.29 6.69 8.30 -40.82 -0.34 6.36 16 36 H 0.12 2.80 7.64 -52.49 -0.40 2.40 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -29.95 325.44 -10.09 -40.04 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.39 Total: 7.46 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -5.54 Total: -7.76 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.47 Total: -46.98 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.17 Total: 15.72 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.44 Total: -2.90 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.95 -10.09 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361893242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.635 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds