Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76203 * 100.00036 * 2 1 4 4 C 1.39760 * 120.49519 * 180.02562 * 3 2 1 5 5 C 1.38061 * 118.46559 * 179.97438 * 4 3 2 6 6 N 1.32542 * 119.28923 * 359.97438 * 5 4 3 7 7 C 1.32404 * 120.95776 * 0.02562 * 6 5 4 8 8 N 1.38832 * 119.16566 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00283 * 359.97438 * 8 7 6 10 10 O 1.21536 * 119.99833 * 359.97438 * 9 8 7 11 11 C 1.47842 * 120.00283 * 179.72884 * 9 8 7 12 12 C 1.39936 * 120.02772 * 359.97438 * 11 9 8 13 13 C 1.38320 * 120.35755 * 179.69839 * 12 11 9 14 14 C 1.37758 * 120.41186 * 0.60589 * 13 12 11 15 15 C 1.40760 * 120.04430 * 359.67111 * 14 13 12 16 16 C 1.41435 * 120.17294 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99793 * 150.18016 * 16 15 14 18 18 C 1.39927 * 120.00532 * 330.17911 * 16 15 14 19 19 N 1.30827 * 120.00079 * 161.73278 * 18 16 15 20 20 Si 1.86809 * 119.99930 * 341.73151 * 18 16 15 21 21 H 1.48493 * 109.46928 * 95.41231 * 20 18 16 22 22 H 1.48504 * 109.47130 * 215.41332 * 20 18 16 23 23 H 1.48497 * 109.46776 * 335.41195 * 20 18 16 24 24 C 1.39020 * 120.02673 * 180.27938 * 11 9 8 25 25 N 1.32387 * 121.67033 * 0.27269 * 7 6 5 26 26 H 1.08998 * 109.46704 * 299.99793 * 1 2 3 27 27 H 1.09001 * 109.46933 * 59.99674 * 1 2 3 28 28 H 1.08991 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.77019 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.35790 * 180.02562 * 5 4 3 31 31 H 0.97007 * 120.00321 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.81891 * 359.97438 * 12 11 9 33 33 H 1.08000 * 119.79479 * 180.30056 * 13 12 11 34 34 H 1.08003 * 119.97887 * 179.70302 * 14 13 12 35 35 H 0.97008 * 119.99666 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.20000 * 359.97173 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4252 2.2246 -0.0005 5 6 3.6166 3.5919 -0.0011 6 7 2.5617 4.3943 -0.0016 7 6 1.3322 3.9030 -0.0010 8 7 0.2541 4.7777 -0.0010 9 6 0.4660 6.1086 -0.0010 10 8 1.6011 6.5432 -0.0006 11 6 -0.6820 7.0401 -0.0071 12 6 -1.9891 6.5404 -0.0134 13 6 -3.0683 7.4056 -0.0128 14 6 -2.8692 8.7687 -0.0186 15 6 -1.5617 9.2900 -0.0181 16 6 -1.3542 10.6890 -0.0235 17 1 -0.4731 11.1060 0.4416 18 6 -2.2902 11.5330 -0.6315 19 7 -2.3052 12.8089 -0.3428 20 14 -3.5185 10.8377 -1.8553 21 1 -4.7919 10.5283 -1.1570 22 1 -3.7705 11.8363 -2.9252 23 1 -2.9692 9.5960 -2.4566 24 6 -0.4639 8.4130 -0.0130 25 7 1.1049 2.5988 0.0053 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 4.2676 1.5488 -0.0005 30 1 4.6152 4.0032 -0.0019 31 1 -0.6519 4.4309 -0.0003 32 1 -2.1562 5.4734 -0.0142 33 1 -4.0733 7.0101 -0.0128 34 1 -3.7170 9.4379 -0.0229 35 1 -2.9544 13.3939 -0.7640 36 1 0.5431 8.8031 -0.0127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361893242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = 34.482480 kcal Electronic energy + Delta-G solvation = -22232.848856 eV Core-core repulsion = 18808.115320 eV Total energy + Delta-G solvation = -3424.733536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36181 -40.83109 -39.11146 -36.29491 -35.57801 -34.86357 -32.92282 -32.00745 -31.48408 -29.83336 -27.27705 -26.23426 -25.72626 -24.10423 -22.52095 -21.96248 -20.20427 -19.63949 -18.54996 -17.93986 -17.49640 -17.09258 -16.93312 -16.60731 -16.51069 -15.82139 -15.51458 -15.48165 -15.17632 -14.82377 -14.60131 -14.52656 -14.41181 -13.87912 -13.41878 -13.33663 -12.88579 -12.73923 -12.47381 -12.37828 -12.23670 -12.10472 -11.80954 -11.77576 -11.60488 -11.25433 -10.99561 -10.13172 -10.10315 -9.67916 -9.63188 -8.93183 -8.80174 -6.57563 -0.32995 -0.11276 0.23690 0.28702 0.70910 1.04470 1.25254 1.41271 1.48061 1.52046 1.82005 2.10803 2.55967 2.75281 3.10440 3.37270 3.41924 3.74863 3.93091 4.21605 4.22573 4.33047 4.33700 4.35064 4.44098 4.54777 4.82750 4.87654 4.91088 4.96879 5.09827 5.27690 5.36675 5.55710 5.65375 5.77600 5.81597 5.94870 6.13592 6.28127 6.61610 6.71478 6.87904 7.14202 8.15634 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.002796 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.203082 B =10013.282501 C =10770.050317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.019 6.019 3 C 0.164 3.836 4 C -0.232 4.232 5 C 0.178 3.822 6 N -0.553 5.553 7 C 0.537 3.463 8 N -0.627 5.627 9 C 0.563 3.437 10 O -0.506 6.506 11 C -0.110 4.110 12 C -0.184 4.184 13 C -0.079 4.079 14 C -0.222 4.222 15 C 0.067 3.933 16 C -0.486 4.486 17 H 0.051 0.949 18 C 0.045 3.955 19 N -0.847 5.847 20 Si 0.966 3.034 21 H -0.245 1.245 22 H -0.278 1.278 23 H -0.251 1.251 24 C -0.159 4.159 25 N -0.556 5.556 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.186 0.814 30 H 0.202 0.798 31 H 0.434 0.566 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.109 0.891 35 H 0.296 0.704 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -26.639 -1.163 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.218 5.782 3 C -0.093 4.093 4 C -0.262 4.262 5 C 0.012 3.988 6 N -0.276 5.276 7 C 0.178 3.822 8 N -0.278 5.278 9 C 0.352 3.648 10 O -0.377 6.377 11 C -0.113 4.113 12 C -0.203 4.203 13 C -0.096 4.096 14 C -0.241 4.241 15 C 0.064 3.936 16 C -0.515 4.515 17 H 0.070 0.930 18 C -0.169 4.169 19 N -0.473 5.473 20 Si 0.788 3.212 21 H -0.169 1.169 22 H -0.205 1.205 23 H -0.174 1.174 24 C -0.180 4.180 25 N -0.282 5.282 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.148 0.852 29 H 0.203 0.797 30 H 0.219 0.781 31 H 0.276 0.724 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.983 -26.324 -1.149 26.517 hybrid contribution -0.659 1.241 -0.220 1.422 sum 2.324 -25.083 -1.370 25.228 Atomic orbital electron populations 1.23594 0.92394 1.07870 1.06921 1.85696 1.09658 0.93327 1.89506 1.23916 0.91875 1.00146 0.93369 1.22680 0.97741 0.97904 1.07859 1.23692 0.98297 0.89668 0.87110 1.68559 0.98812 1.41082 1.19117 1.19510 0.86595 0.85378 0.90720 1.43024 1.08727 1.04634 1.71408 1.18839 0.89380 0.81349 0.75251 1.90810 1.24620 1.76880 1.45426 1.19443 0.92821 0.92327 1.06738 1.20999 0.90055 0.99859 1.09427 1.21032 0.99591 0.92037 0.96968 1.21437 0.95654 0.96385 1.10670 1.17751 0.92154 0.92913 0.90745 1.19465 1.07141 0.90818 1.34123 0.93034 1.26910 0.98066 0.94625 0.97340 1.69724 1.33827 1.06728 1.37002 0.85483 0.78643 0.79118 0.77943 1.16941 1.20462 1.17414 1.21185 0.97867 0.91973 1.06938 1.68106 1.35537 1.01284 1.23322 0.89451 0.89454 0.85220 0.79696 0.78133 0.72421 0.83507 0.83199 0.87343 0.89369 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.68 113.37 1.10 -0.47 16 2 S -0.02 -0.27 22.74 -56.49 -1.28 -1.55 16 3 C 0.16 3.45 7.01 84.89 0.59 4.04 16 4 C -0.23 -4.24 9.94 22.60 0.22 -4.02 16 5 C 0.18 4.10 11.28 84.54 0.95 5.05 16 6 N -0.55 -18.40 7.86 -198.03 -1.56 -19.96 16 7 C 0.54 16.84 8.38 261.36 2.19 19.03 16 8 N -0.63 -19.59 5.35 -316.36 -1.69 -21.28 16 9 C 0.56 22.25 7.73 86.79 0.67 22.92 16 10 O -0.51 -23.57 14.52 -3.83 -0.06 -23.63 16 11 C -0.11 -4.50 5.87 -20.14 -0.12 -4.62 16 12 C -0.18 -6.15 9.55 22.70 0.22 -5.93 16 13 C -0.08 -2.75 10.01 22.18 0.22 -2.53 16 14 C -0.22 -9.72 7.17 22.77 0.16 -9.56 16 15 C 0.07 3.40 5.10 -21.32 -0.11 3.29 16 16 C -0.49 -27.62 9.57 23.47 0.22 -27.39 16 17 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 18 C 0.05 2.41 5.40 85.25 0.46 2.87 16 19 N -0.85 -46.37 13.93 21.82 0.30 -46.06 16 20 Si 0.97 41.01 24.52 68.60 1.68 42.70 16 21 H -0.24 -9.38 6.71 99.48 0.67 -8.71 16 22 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.25 -10.79 6.86 99.48 0.68 -10.11 16 24 C -0.16 -7.81 9.34 23.01 0.21 -7.59 16 25 N -0.56 -14.19 9.32 -193.87 -1.81 -15.99 16 26 H 0.09 1.11 8.13 -2.40 -0.02 1.09 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.13 0.76 8.14 -2.40 -0.02 0.74 16 29 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.20 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.43 10.56 6.83 -92.70 -0.63 9.93 16 32 H 0.15 3.47 6.38 -2.91 -0.02 3.45 16 33 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.11 4.65 4.72 -2.91 -0.01 4.63 16 35 H 0.30 14.41 8.30 -92.70 -0.77 13.64 16 36 H 0.09 4.91 7.64 -2.91 -0.02 4.89 16 Total: -1.00 -71.43 325.44 3.04 -68.38 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.45 Total: 22.30 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 7.01 Total: -4.90 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -4.75 Total: -103.30 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.68 Total: 42.70 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.28 Total: -1.55 kcal Total: -71.43 3.04 -68.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361893242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.865 kcal (2) G-P(sol) polarization free energy of solvation -71.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds