Wall clock time and date at job start Tue Mar 31 2020 11:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76193 * 99.99970 * 2 1 4 4 C 1.39767 * 120.49696 * 180.02562 * 3 2 1 5 5 C 1.38070 * 118.46931 * 180.02562 * 4 3 2 6 6 N 1.32539 * 119.28810 * 359.97438 * 5 4 3 7 7 C 1.32410 * 120.95855 * 0.02562 * 6 5 4 8 8 N 1.38805 * 119.16991 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99331 * 359.97438 * 8 7 6 10 10 O 1.21575 * 120.00410 * 0.02562 * 9 8 7 11 11 C 1.47585 * 119.99523 * 179.97438 * 9 8 7 12 12 C 1.40036 * 119.89515 * 179.97438 * 11 9 8 13 13 C 1.36301 * 120.10761 * 179.70397 * 12 11 9 14 14 C 1.40909 * 119.88828 * 0.27308 * 13 12 11 15 15 C 1.41091 * 120.09535 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00168 * 25.06854 * 15 14 13 17 17 C 1.40237 * 119.99727 * 205.06303 * 15 14 13 18 18 N 1.30648 * 120.00006 * 18.03337 * 17 15 14 19 19 Si 1.86801 * 120.00182 * 198.03138 * 17 15 14 20 20 H 1.48507 * 109.46832 * 94.52951 * 19 17 15 21 21 H 1.48497 * 109.47242 * 214.52782 * 19 17 15 22 22 H 1.48496 * 109.46831 * 334.53134 * 19 17 15 23 23 C 1.40895 * 119.79556 * 0.02562 * 14 13 12 24 24 C 1.36295 * 119.89754 * 359.97438 * 23 14 13 25 25 N 1.32400 * 121.66954 * 0.27314 * 7 6 5 26 26 H 1.09005 * 109.46860 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47275 * 299.99507 * 1 2 3 28 28 H 1.08997 * 109.47123 * 60.00091 * 1 2 3 29 29 H 1.08000 * 120.76735 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.35136 * 180.02562 * 5 4 3 31 31 H 0.96995 * 120.00264 * 179.97438 * 8 7 6 32 32 H 1.08009 * 119.94741 * 359.97438 * 12 11 9 33 33 H 1.07995 * 120.05610 * 180.29810 * 13 12 11 34 34 H 0.96995 * 120.00206 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.04759 * 180.02562 * 23 14 13 36 36 H 1.08006 * 119.94800 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4251 2.2246 -0.0005 5 6 3.6166 3.5919 0.0000 6 7 2.5617 4.3944 0.0005 7 6 1.3321 3.9030 0.0010 8 7 0.2541 4.7775 0.0021 9 6 0.4663 6.1085 0.0031 10 8 1.6017 6.5432 0.0027 11 6 -0.6798 7.0383 0.0037 12 6 -0.4570 8.4208 0.0053 13 6 -1.5123 9.2834 -0.0002 14 6 -2.8292 8.7820 -0.0018 15 6 -3.9247 9.6709 -0.0081 16 1 -3.8092 10.6675 -0.4079 17 6 -5.1638 9.2604 0.5047 18 7 -5.2323 8.2210 1.2932 19 14 -6.7161 10.1996 0.0602 20 1 -7.3712 9.5504 -1.1037 21 1 -7.6461 10.1948 1.2179 22 1 -6.3650 11.6001 -0.2869 23 6 -3.0483 7.3902 0.0029 24 6 -1.9868 6.5353 0.0085 25 7 1.1047 2.5987 0.0064 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 4.2675 1.5488 -0.0005 30 1 4.6152 4.0031 -0.0008 31 1 -0.6517 4.4307 0.0021 32 1 0.5527 8.8042 0.0066 33 1 -1.3395 10.3495 -0.0038 34 1 -6.0893 7.9368 1.6476 35 1 -4.0559 7.0014 0.0013 36 1 -2.1538 5.4682 0.0117 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411465491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:07 Heat of formation + Delta-G solvation = 31.318966 kcal Electronic energy + Delta-G solvation = -22137.618119 eV Core-core repulsion = 18712.747403 eV Total energy + Delta-G solvation = -3424.870716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26103 -40.61503 -38.95208 -36.10058 -35.71945 -34.82084 -32.63342 -31.49543 -31.33015 -29.85397 -27.94457 -26.05975 -25.24018 -23.61247 -22.82569 -21.66204 -19.94070 -19.38091 -19.04636 -17.75953 -17.33794 -17.13827 -16.81743 -16.59272 -15.94893 -15.77279 -15.35465 -15.24130 -15.08418 -14.81470 -14.52469 -14.41817 -13.96052 -13.74594 -13.34739 -13.27465 -12.89490 -12.69684 -12.46356 -12.33275 -12.22106 -12.03856 -11.82712 -11.76531 -11.40870 -11.16325 -10.91318 -10.05704 -10.01895 -9.62651 -9.47462 -8.83737 -8.79580 -6.52277 -0.23017 -0.06178 0.30327 0.43921 1.05358 1.12509 1.38361 1.42461 1.53858 1.66128 2.01147 2.15563 2.62996 2.84945 3.18645 3.50286 3.64744 3.87389 4.14354 4.23274 4.27866 4.29950 4.32960 4.41148 4.46693 4.89491 4.94641 4.99056 5.00655 5.10143 5.24020 5.34822 5.53325 5.68181 5.81211 5.94580 5.95517 6.15350 6.18546 6.49751 6.72762 6.83692 7.05710 7.27961 8.11690 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021996 B = 0.002750 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.624684 B =10181.200817 C =11367.008120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.018 6.018 3 C 0.163 3.837 4 C -0.236 4.236 5 C 0.178 3.822 6 N -0.549 5.549 7 C 0.538 3.462 8 N -0.637 5.637 9 C 0.570 3.430 10 O -0.529 6.529 11 C -0.294 4.294 12 C -0.024 4.024 13 C -0.251 4.251 14 C 0.104 3.896 15 C -0.466 4.466 16 H 0.088 0.912 17 C 0.038 3.962 18 N -0.794 5.794 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.257 1.257 23 C -0.195 4.195 24 C -0.054 4.054 25 N -0.564 5.564 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.186 0.814 30 H 0.204 0.796 31 H 0.427 0.573 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.298 0.702 35 H 0.115 0.885 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -15.578 -1.778 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.219 5.781 3 C -0.095 4.095 4 C -0.266 4.266 5 C 0.012 3.988 6 N -0.272 5.272 7 C 0.180 3.820 8 N -0.287 5.287 9 C 0.364 3.636 10 O -0.404 6.404 11 C -0.299 4.299 12 C -0.044 4.044 13 C -0.270 4.270 14 C 0.100 3.900 15 C -0.493 4.493 16 H 0.107 0.893 17 C -0.182 4.182 18 N -0.417 5.417 19 Si 0.808 3.192 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.180 1.180 23 C -0.215 4.215 24 C -0.073 4.073 25 N -0.291 5.291 26 H 0.149 0.851 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.203 0.797 30 H 0.221 0.779 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.084 -15.707 -1.605 17.306 hybrid contribution -1.307 0.911 0.042 1.594 sum 5.777 -14.796 -1.564 15.961 Atomic orbital electron populations 1.23575 0.92718 1.07799 1.06718 1.85569 1.09293 0.93543 1.89676 1.23918 0.91973 1.00086 0.93503 1.22663 0.97551 0.97989 1.08380 1.23739 0.98366 0.89629 0.87080 1.68595 0.98608 1.40842 1.19158 1.19594 0.86779 0.85307 0.90351 1.43197 1.08251 1.05282 1.71943 1.18658 0.89419 0.80760 0.74786 1.90734 1.24548 1.76693 1.48430 1.18915 0.91468 0.92880 1.26646 1.20483 0.97915 0.92107 0.93859 1.20867 0.92513 0.98435 1.15212 1.18159 0.92617 0.93374 0.85811 1.20184 0.94620 1.00693 1.33793 0.89345 1.26959 1.03928 0.95665 0.91647 1.69757 1.29775 1.22384 1.19758 0.85078 0.75571 0.79355 0.79174 1.18323 1.18947 1.18006 1.20982 0.98112 0.93294 1.09064 1.20706 0.91448 0.98607 0.96515 1.68121 1.35715 1.01554 1.23673 0.85128 0.89761 0.89695 0.79661 0.77901 0.73315 0.87514 0.87370 0.89023 0.86745 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.68 113.37 1.10 -1.00 16 2 S -0.02 -0.30 22.74 -56.49 -1.28 -1.59 16 3 C 0.16 3.95 7.01 84.89 0.59 4.54 16 4 C -0.24 -4.89 9.94 22.60 0.22 -4.66 16 5 C 0.18 4.48 11.28 84.55 0.95 5.43 16 6 N -0.55 -19.84 7.86 -198.03 -1.56 -21.40 16 7 C 0.54 19.21 8.38 261.36 2.19 21.40 16 8 N -0.64 -23.63 5.34 -316.57 -1.69 -25.32 16 9 C 0.57 25.00 7.72 86.71 0.67 25.66 16 10 O -0.53 -25.74 14.51 -3.95 -0.06 -25.80 16 11 C -0.29 -13.43 5.89 -19.94 -0.12 -13.55 16 12 C -0.02 -1.16 9.52 22.25 0.21 -0.94 16 13 C -0.25 -12.18 9.73 22.47 0.22 -11.97 16 14 C 0.10 5.28 5.57 -21.27 -0.12 5.16 16 15 C -0.47 -22.95 9.04 23.46 0.21 -22.74 16 16 H 0.09 4.17 7.91 -2.91 -0.02 4.14 16 17 C 0.04 1.71 5.13 85.35 0.44 2.15 16 18 N -0.79 -37.11 10.99 21.87 0.24 -36.87 16 19 Si 0.99 33.90 29.60 68.60 2.03 35.93 16 20 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 21 H -0.27 -8.64 7.11 99.48 0.71 -7.94 16 22 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 23 C -0.20 -9.49 8.63 22.47 0.19 -9.29 16 24 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 25 N -0.56 -16.85 9.32 -193.88 -1.81 -18.65 16 26 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.45 8.13 -2.40 -0.02 1.43 16 28 H 0.08 1.44 8.14 -2.40 -0.02 1.42 16 29 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 31 H 0.43 13.77 6.81 -92.71 -0.63 13.14 16 32 H 0.11 4.88 7.63 -2.91 -0.02 4.85 16 33 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.30 12.36 8.29 -92.71 -0.77 11.59 16 35 H 0.11 5.62 6.19 -2.91 -0.02 5.60 16 36 H 0.12 4.34 6.37 -2.91 -0.02 4.32 16 Total: -1.00 -64.49 330.48 3.36 -61.12 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.51 Total: 34.53 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.98 Total: -1.96 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -4.82 Total: -102.24 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.06 Total: -25.80 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: 2.03 Total: 35.93 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -1.28 Total: -1.59 kcal Total: -64.49 3.36 -61.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411465491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.444 kcal (2) G-P(sol) polarization free energy of solvation -64.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds