Wall clock time and date at job start Tue Mar 31 2020 11:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76201 * 99.99612 * 2 1 4 4 C 1.39345 * 120.49413 * 180.02562 * 3 2 1 5 5 C 1.39000 * 118.26002 * 180.02562 * 4 3 2 6 6 N 1.39013 * 120.47344 * 179.97438 * 5 4 3 7 7 C 1.34767 * 119.99958 * 174.65502 * 6 5 4 8 8 O 1.21585 * 120.00409 * 5.04167 * 7 6 5 9 9 C 1.47580 * 120.00022 * 185.03693 * 7 6 5 10 10 C 1.40044 * 119.89779 * 180.02562 * 9 7 6 11 11 C 1.36308 * 120.10380 * 180.23446 * 10 9 7 12 12 C 1.40893 * 119.89039 * 359.52292 * 11 10 9 13 13 C 1.41103 * 120.09990 * 180.22953 * 12 11 10 14 14 H 1.07991 * 119.99703 * 209.73902 * 13 12 11 15 15 C 1.40233 * 119.99615 * 29.73865 * 13 12 11 16 16 N 1.30638 * 120.00118 * 9.93005 * 15 13 12 17 17 Si 1.86806 * 119.99861 * 189.92812 * 15 13 12 18 18 H 1.48494 * 109.46887 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46767 * 120.00140 * 17 15 13 20 20 H 1.48491 * 109.47176 * 239.99949 * 17 15 13 21 21 C 1.40894 * 119.80408 * 0.47675 * 12 11 10 22 22 C 1.36308 * 119.89011 * 359.75440 * 21 12 11 23 23 N 1.33174 * 119.05052 * 0.24935 * 5 4 3 24 24 C 1.31726 * 120.91198 * 359.49203 * 23 5 4 25 25 N 1.31748 * 121.91564 * 0.51951 * 24 23 5 26 26 H 1.09002 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47300 * 299.99830 * 1 2 3 28 28 H 1.08999 * 109.47388 * 59.99992 * 1 2 3 29 29 H 1.08001 * 120.86996 * 0.04083 * 4 3 2 30 30 H 0.97004 * 119.99974 * 354.66078 * 6 5 4 31 31 H 1.07996 * 119.94855 * 359.96155 * 10 9 7 32 32 H 1.07996 * 120.05331 * 179.74864 * 11 10 9 33 33 H 0.97005 * 120.00280 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.06060 * 179.73405 * 21 12 11 35 35 H 1.08003 * 119.94688 * 179.97438 * 22 21 12 36 36 H 1.07999 * 119.04626 * 180.24769 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4211 2.2232 -0.0005 5 6 3.6088 3.6005 0.0000 6 7 4.8912 4.1372 0.0001 7 6 5.0641 5.4693 -0.1081 8 8 4.0993 6.2092 -0.1134 9 6 6.4246 6.0302 -0.2200 10 6 6.6018 7.4148 -0.3318 11 6 7.8562 7.9370 -0.4402 12 6 8.9760 7.0820 -0.4296 13 6 10.2768 7.6181 -0.5366 14 1 11.0634 7.0387 -0.9968 15 6 10.5480 8.9034 -0.0456 16 7 9.6581 9.5267 0.6799 17 14 12.1817 9.7241 -0.4287 18 1 13.0086 8.8154 -1.2626 19 1 11.9388 10.9892 -1.1675 20 1 12.8960 10.0206 0.8389 21 6 8.7928 5.6895 -0.3169 22 6 7.5343 5.1761 -0.2138 23 7 2.5426 4.3984 0.0061 24 6 1.3237 3.8992 0.0016 25 7 1.1030 2.6003 0.0010 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 4.2648 1.5489 -0.0016 30 1 5.6615 3.5528 0.0779 31 1 5.7430 8.0697 -0.3365 32 1 7.9917 9.0046 -0.5304 33 1 9.8458 10.4156 1.0199 34 1 9.6480 5.0300 -0.3127 35 1 7.3928 4.1088 -0.1278 36 1 0.4806 4.5741 0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461694959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:12 Heat of formation + Delta-G solvation = 38.935003 kcal Electronic energy + Delta-G solvation = -21904.049662 eV Core-core repulsion = 18479.509202 eV Total energy + Delta-G solvation = -3424.540460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04345 -39.15848 -37.28927 -35.06200 -33.96712 -33.00077 -31.34854 -30.11945 -29.55997 -29.16311 -26.28138 -24.75223 -24.04017 -22.14774 -21.07583 -20.08327 -18.90835 -17.65257 -17.40179 -16.87109 -15.82405 -15.60198 -15.37233 -15.30651 -14.94599 -14.28430 -14.16260 -14.07793 -13.87817 -13.58139 -13.32372 -12.84932 -12.70200 -12.33783 -11.97048 -11.64821 -11.45875 -11.32018 -11.12272 -11.01333 -10.77943 -10.70491 -10.55330 -10.13011 -9.70327 -9.58017 -9.50729 -8.73840 -8.71581 -8.01042 -7.82281 -7.62913 -7.04282 -4.71201 0.85905 1.02468 1.18744 1.88535 2.11145 2.84739 2.91622 2.93519 2.97413 3.05098 3.58694 3.70942 3.95300 4.19209 4.47610 4.50368 4.82544 4.88132 4.95680 5.12590 5.30148 5.44456 5.54827 5.71343 5.81402 6.01750 6.16372 6.62768 6.73108 6.77386 6.78917 6.93446 6.98046 7.33557 7.45990 7.49867 7.76369 7.85224 7.97600 8.22229 8.34494 8.54132 8.64077 8.79319 9.86982 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.042664 B = 0.002316 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.132591 B =12087.174704 C =12669.761581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.057 6.057 3 C 0.178 3.822 4 C -0.255 4.255 5 C 0.432 3.568 6 N -0.657 5.657 7 C 0.559 3.441 8 O -0.497 6.497 9 C -0.282 4.282 10 C -0.034 4.034 11 C -0.174 4.174 12 C 0.129 3.871 13 C -0.440 4.440 14 H 0.086 0.914 15 C 0.070 3.930 16 N -0.775 5.775 17 Si 0.918 3.082 18 H -0.258 1.258 19 H -0.269 1.269 20 H -0.271 1.271 21 C -0.228 4.228 22 C -0.053 4.053 23 N -0.514 5.514 24 C 0.339 3.661 25 N -0.560 5.560 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.417 0.583 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.287 0.713 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 -13.509 -0.625 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.180 5.820 3 C -0.077 4.077 4 C -0.289 4.289 5 C 0.191 3.809 6 N -0.303 5.303 7 C 0.353 3.647 8 O -0.370 6.370 9 C -0.286 4.286 10 C -0.054 4.054 11 C -0.194 4.194 12 C 0.126 3.874 13 C -0.468 4.468 14 H 0.104 0.896 15 C -0.151 4.151 16 N -0.398 5.398 17 Si 0.741 3.259 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.196 1.196 21 C -0.247 4.247 22 C -0.072 4.072 23 N -0.237 5.237 24 C 0.046 3.954 25 N -0.283 5.283 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.166 0.834 30 H 0.256 0.744 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.366 -13.050 -0.502 16.674 hybrid contribution 0.980 0.604 0.050 1.152 sum -9.387 -12.446 -0.452 15.595 Atomic orbital electron populations 1.23441 0.93620 1.05969 1.07241 1.85747 1.08279 0.97172 1.90816 1.23079 0.91267 0.99193 0.94149 1.21689 0.98119 0.94956 1.14119 1.18616 0.86886 0.88032 0.87393 1.43955 1.04695 1.10198 1.71427 1.18955 0.90647 0.79811 0.75250 1.90776 1.42014 1.57398 1.46793 1.18798 0.89289 0.94593 1.25938 1.20498 0.97080 0.92650 0.95128 1.21081 0.90763 1.00424 1.07091 1.17848 0.93509 0.90962 0.85121 1.19891 0.95920 0.98986 1.31993 0.89632 1.26119 0.99402 0.96847 0.92734 1.69712 1.34727 1.13161 1.22238 0.86092 0.80818 0.79575 0.79392 1.18126 1.19396 1.19618 1.20734 0.95251 0.95642 1.13087 1.20365 0.93045 0.96141 0.97628 1.68607 0.98345 1.38684 1.18027 1.24905 0.93550 0.88830 0.88088 1.68696 1.33772 1.04655 1.21148 0.88122 0.89126 0.89118 0.83422 0.74395 0.87896 0.85784 0.90161 0.88183 0.89264 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.68 101.05 0.98 -0.02 16 2 S -0.06 -0.56 22.74 -107.50 -2.44 -3.00 16 3 C 0.18 2.28 7.00 -16.55 -0.12 2.16 16 4 C -0.25 -3.36 9.81 -38.89 -0.38 -3.74 16 5 C 0.43 7.02 7.44 -154.40 -1.15 5.87 16 6 N -0.66 -10.88 5.32 -12.28 -0.07 -10.94 16 7 C 0.56 11.61 7.72 -12.45 -0.10 11.52 16 8 O -0.50 -11.76 14.63 5.29 0.08 -11.68 16 9 C -0.28 -6.14 5.89 -104.73 -0.62 -6.76 16 10 C -0.03 -0.81 9.52 -39.60 -0.38 -1.18 16 11 C -0.17 -4.31 8.59 -39.27 -0.34 -4.64 16 12 C 0.13 3.16 5.55 -106.80 -0.59 2.57 16 13 C -0.44 -10.58 9.05 -37.75 -0.34 -10.92 16 14 H 0.09 1.94 7.87 -52.49 -0.41 1.53 16 15 C 0.07 1.60 5.26 -17.31 -0.09 1.51 16 16 N -0.77 -18.55 10.85 55.56 0.60 -17.95 16 17 Si 0.92 17.03 29.57 -169.99 -5.03 12.01 16 18 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 21 C -0.23 -5.00 9.73 -39.27 -0.38 -5.38 16 22 C -0.05 -1.05 9.47 -39.60 -0.37 -1.43 16 23 N -0.51 -9.07 8.04 -13.83 -0.11 -9.18 16 24 C 0.34 4.81 12.28 -92.25 -1.13 3.68 16 25 N -0.56 -7.44 9.30 -13.44 -0.12 -7.57 16 26 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.09 0.71 8.14 -51.91 -0.42 0.29 16 28 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.42 5.53 6.73 -40.82 -0.27 5.26 16 31 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 32 H 0.12 3.15 6.25 -52.49 -0.33 2.82 16 33 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 34 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.09 1.40 6.38 -52.48 -0.34 1.07 16 36 H 0.20 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -29.38 330.50 -10.54 -39.92 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -3.42 Total: 10.18 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -5.01 Total: -6.77 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.30 Total: -45.64 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -2.44 Total: -3.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.38 -10.54 -39.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461694959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.858 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds