Wall clock time and date at job start Tue Mar 31 2020 11:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39796 * 119.98180 * 345.57961 * 3 2 1 5 5 C 1.37575 * 120.07695 * 179.69508 * 4 3 2 6 6 C 1.39801 * 120.02663 * 0.55458 * 5 4 3 7 7 C 1.47604 * 120.01979 * 179.71448 * 6 5 4 8 8 O 1.21617 * 119.99766 * 141.03220 * 7 6 5 9 9 N 1.34777 * 120.00517 * 321.02876 * 7 6 5 10 10 C 1.36781 * 119.99494 * 356.89425 * 9 7 6 11 11 H 1.08000 * 120.00119 * 324.76896 * 10 9 7 12 12 C 1.39111 * 119.99835 * 144.77346 * 10 9 7 13 13 N 1.31329 * 119.99664 * 156.51749 * 12 10 9 14 14 Si 1.86795 * 120.00216 * 336.52061 * 12 10 9 15 15 H 1.48500 * 109.47287 * 85.74270 * 14 12 10 16 16 H 1.48504 * 109.47179 * 205.74451 * 14 12 10 17 17 H 1.48497 * 109.47115 * 325.74324 * 14 12 10 18 18 C 1.46489 * 120.00181 * 176.88865 * 9 7 6 19 19 C 1.50702 * 109.47226 * 90.00619 * 18 9 7 20 20 C 1.35353 * 126.91065 * 265.04458 * 19 18 9 21 21 N 1.33773 * 106.49967 * 179.97438 * 20 19 18 22 22 N 1.28634 * 108.88191 * 359.97438 * 21 20 19 23 23 N 1.28721 * 110.18338 * 359.97438 * 22 21 20 24 24 H 0.96991 * 125.87492 * 180.02562 * 23 22 21 25 25 C 1.39950 * 119.95801 * 359.44519 * 6 5 4 26 26 F 1.35095 * 120.04230 * 180.29667 * 25 6 5 27 27 C 1.38045 * 119.92535 * 0.27540 * 25 6 5 28 28 H 1.08005 * 119.96067 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.98868 * 180.29862 * 5 4 3 30 30 H 0.97000 * 119.99753 * 179.97438 * 13 12 10 31 31 H 1.08995 * 109.47755 * 330.00225 * 18 9 7 32 32 H 1.09007 * 109.47538 * 210.00175 * 18 9 7 33 33 H 1.08000 * 126.74802 * 359.93522 * 20 19 18 34 34 H 1.08002 * 120.01609 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2671 -1.1718 0.3016 5 6 4.6429 -1.1750 0.2960 6 6 5.3440 -0.0022 0.0000 7 6 6.8200 -0.0043 0.0002 8 8 7.4291 0.6268 -0.8423 9 7 7.4929 -0.7055 0.9341 10 6 6.8094 -1.3633 1.9194 11 1 5.9047 -0.9365 2.3265 12 6 7.2797 -2.5822 2.3973 13 7 6.9400 -2.9919 3.5980 14 14 8.3944 -3.6361 1.3315 15 1 9.8036 -3.2025 1.5089 16 1 8.2604 -5.0599 1.7316 17 1 8.0054 -3.4836 -0.0935 18 6 8.9561 -0.7631 0.8937 19 6 9.5261 0.3751 1.7003 20 6 9.9204 1.5836 1.2352 21 7 10.3567 2.2744 2.2944 22 7 10.2397 1.5425 3.3457 23 7 9.7449 0.3954 3.0355 24 1 9.5610 -0.3299 3.6525 25 6 4.6454 1.1722 -0.3021 26 9 5.3212 2.3049 -0.5943 27 6 3.2650 1.1719 -0.3017 28 1 2.7266 -2.0773 0.5348 29 1 5.1815 -2.0827 0.5244 30 1 7.2677 -3.8419 3.9311 31 1 9.2946 -0.6817 -0.1392 32 1 9.2942 -1.7107 1.3132 33 1 9.8895 1.9230 0.2104 34 1 2.7244 2.0775 -0.5342 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706744.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:08 Heat of formation + Delta-G solvation = 93.949279 kcal Electronic energy + Delta-G solvation = -25607.892279 eV Core-core repulsion = 21651.816992 eV Total energy + Delta-G solvation = -3956.075287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.61104 -42.82151 -39.81328 -38.40959 -36.31181 -35.54197 -32.94783 -32.57930 -31.95743 -30.72713 -30.52812 -26.83671 -25.66204 -24.19989 -22.65729 -22.41873 -21.55343 -19.90336 -19.16082 -18.42731 -17.78812 -16.68603 -16.36434 -16.01827 -15.72695 -15.46219 -15.07643 -15.02296 -14.64279 -13.92838 -13.88962 -13.83705 -13.74427 -13.41956 -13.33393 -13.02921 -12.87459 -12.52643 -12.25403 -11.96849 -11.76928 -11.44184 -11.26726 -11.17972 -10.98002 -10.52889 -10.31088 -10.10619 -9.65118 -9.22423 -8.92419 -8.71694 -8.63722 -8.38082 -6.95793 -4.52251 0.51770 1.28754 1.95899 2.57116 2.59617 2.72024 2.91090 2.92684 2.95305 3.23038 3.42569 3.65661 3.68747 3.83872 3.97849 4.44556 4.48001 4.85128 4.97775 5.02111 5.12350 5.22177 5.33143 5.41752 5.70879 5.77968 5.84874 5.98312 6.07031 6.12928 6.33862 6.44795 6.59224 6.74471 6.84711 7.29550 7.38341 7.55075 7.80093 8.42771 8.79940 8.87604 9.14971 10.12039 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.005457 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.265862 B = 5130.042907 C = 6407.170472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.263 3.737 3 C 0.001 3.999 4 C -0.096 4.096 5 C -0.031 4.031 6 C -0.099 4.099 7 C 0.517 3.483 8 O -0.567 6.567 9 N -0.446 5.446 10 C -0.359 4.359 11 H 0.114 0.886 12 C 0.068 3.932 13 N -0.835 5.835 14 Si 0.861 3.139 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.253 1.253 18 C 0.157 3.843 19 C -0.004 4.004 20 C -0.038 4.038 21 N -0.278 5.278 22 N -0.094 5.094 23 N -0.374 5.374 24 H 0.450 0.550 25 C 0.136 3.864 26 F -0.120 7.120 27 C -0.124 4.124 28 H 0.140 0.860 29 H 0.168 0.832 30 H 0.282 0.718 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.189 0.811 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -1.282 -4.442 4.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.052 4.052 3 C -0.003 4.003 4 C -0.117 4.117 5 C -0.050 4.050 6 C -0.104 4.104 7 C 0.307 3.693 8 O -0.450 6.450 9 N -0.166 5.166 10 C -0.486 4.486 11 H 0.131 0.869 12 C -0.143 4.143 13 N -0.468 5.468 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.176 1.176 18 C 0.032 3.968 19 C -0.139 4.139 20 C -0.196 4.196 21 N -0.145 5.145 22 N -0.074 5.074 23 N -0.095 5.095 24 H 0.296 0.704 25 C 0.116 3.884 26 F -0.098 7.098 27 C -0.146 4.146 28 H 0.158 0.842 29 H 0.185 0.815 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.206 0.794 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.741 -0.073 -3.623 4.020 hybrid contribution 0.452 -1.635 -0.652 1.817 sum -1.290 -1.708 -4.274 4.780 Atomic orbital electron populations 1.81233 1.11993 1.07593 1.08862 1.25606 0.92502 0.93539 0.93531 1.15744 0.84190 0.95017 1.05301 1.21186 0.94282 0.96841 0.99357 1.21655 0.92717 0.98913 0.91680 1.20245 0.95114 0.93309 1.01707 1.17932 0.86269 0.83221 0.81917 1.90727 1.69052 1.46079 1.39178 1.43554 1.02932 1.45291 1.24828 1.19246 1.11954 1.02834 1.14527 0.86880 1.25370 0.97093 0.96754 0.95056 1.69735 1.41884 1.21562 1.13581 0.87333 0.80355 0.80469 0.83108 1.19430 1.20640 1.17632 1.20467 0.82573 0.94178 0.99552 1.22699 1.05479 1.00897 0.84855 1.23419 1.04391 0.91339 1.00449 1.75010 1.18430 1.25118 0.95914 1.78161 1.16707 0.91099 1.21472 1.45072 1.41960 1.14306 1.08176 0.70421 1.17390 0.88980 0.82413 0.99646 1.91568 1.80095 1.47908 1.90242 1.20859 0.92028 0.98561 1.03102 0.84227 0.81508 0.90689 0.87626 0.89186 0.79386 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.15 18.54 41.84 0.78 -5.37 16 2 C 0.26 3.38 15.32 -22.47 -0.34 3.04 16 3 C 0.00 0.02 5.73 -106.88 -0.61 -0.60 16 4 C -0.10 -1.18 9.73 -39.24 -0.38 -1.56 16 5 C -0.03 -0.46 7.85 -39.24 -0.31 -0.77 16 6 C -0.10 -1.69 5.24 -104.85 -0.55 -2.24 16 7 C 0.52 10.17 7.16 -12.44 -0.09 10.08 16 8 O -0.57 -12.15 15.81 5.26 0.08 -12.06 16 9 N -0.45 -8.58 2.19 -117.27 -0.26 -8.84 16 10 C -0.36 -7.19 6.89 -15.02 -0.10 -7.29 16 11 H 0.11 2.46 6.80 -52.49 -0.36 2.10 16 12 C 0.07 1.36 5.30 -17.44 -0.09 1.27 16 13 N -0.84 -18.12 13.95 55.50 0.77 -17.34 16 14 Si 0.86 15.49 25.43 -169.99 -4.32 11.17 16 15 H -0.27 -4.56 6.19 56.52 0.35 -4.21 16 16 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 17 H -0.25 -4.56 7.11 56.52 0.40 -4.16 16 18 C 0.16 2.79 4.77 -5.20 -0.02 2.76 16 19 C 0.00 -0.06 6.89 -82.08 -0.57 -0.63 16 20 C -0.04 -0.69 11.99 -17.73 -0.21 -0.90 16 21 N -0.28 -5.42 12.41 30.24 0.38 -5.04 16 22 N -0.09 -1.77 13.38 60.35 0.81 -0.97 16 23 N -0.37 -6.51 6.98 33.54 0.23 -6.28 16 24 H 0.45 7.00 8.96 -190.40 -1.71 5.30 16 25 C 0.14 2.17 7.23 -39.01 -0.28 1.89 16 26 F -0.12 -2.12 16.19 2.25 0.04 -2.09 16 27 C -0.12 -1.59 9.71 -39.15 -0.38 -1.97 16 28 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.17 2.56 6.37 -52.49 -0.33 2.23 16 30 H 0.28 5.78 8.31 -40.82 -0.34 5.44 16 31 H 0.11 1.77 7.47 -51.93 -0.39 1.38 16 32 H 0.09 1.57 2.77 -51.93 -0.14 1.42 16 33 H 0.19 3.11 8.06 -52.49 -0.42 2.69 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -25.47 313.94 -4.09 -29.57 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.38 Total: 9.45 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.95 Total: 3.08 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 2.71 Total: -43.84 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 15.49 SS G_CDS: -4.32 Total: 11.17 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.47 -4.09 -29.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706744.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.515 kcal (2) G-P(sol) polarization free energy of solvation -25.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds