Wall clock time and date at job start Tue Mar 31 2020 11:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39796 * 119.98180 * 345.57961 * 3 2 1 5 5 C 1.37575 * 120.07695 * 179.69508 * 4 3 2 6 6 C 1.39801 * 120.02663 * 0.55458 * 5 4 3 7 7 C 1.47604 * 120.01979 * 179.71448 * 6 5 4 8 8 O 1.21617 * 119.99766 * 141.03220 * 7 6 5 9 9 N 1.34777 * 120.00517 * 321.02876 * 7 6 5 10 10 C 1.36781 * 119.99494 * 356.89425 * 9 7 6 11 11 H 1.08000 * 120.00119 * 324.76896 * 10 9 7 12 12 C 1.39111 * 119.99835 * 144.77346 * 10 9 7 13 13 N 1.31329 * 119.99664 * 156.51749 * 12 10 9 14 14 Si 1.86795 * 120.00216 * 336.52061 * 12 10 9 15 15 H 1.48500 * 109.47287 * 85.74270 * 14 12 10 16 16 H 1.48504 * 109.47179 * 205.74451 * 14 12 10 17 17 H 1.48497 * 109.47115 * 325.74324 * 14 12 10 18 18 C 1.46489 * 120.00181 * 176.88865 * 9 7 6 19 19 C 1.50702 * 109.47226 * 90.00619 * 18 9 7 20 20 C 1.35353 * 126.91065 * 265.04458 * 19 18 9 21 21 N 1.33773 * 106.49967 * 179.97438 * 20 19 18 22 22 N 1.28634 * 108.88191 * 359.97438 * 21 20 19 23 23 N 1.28721 * 110.18338 * 359.97438 * 22 21 20 24 24 H 0.96991 * 125.87492 * 180.02562 * 23 22 21 25 25 C 1.39950 * 119.95801 * 359.44519 * 6 5 4 26 26 F 1.35095 * 120.04230 * 180.29667 * 25 6 5 27 27 C 1.38045 * 119.92535 * 0.27540 * 25 6 5 28 28 H 1.08005 * 119.96067 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.98868 * 180.29862 * 5 4 3 30 30 H 0.97000 * 119.99753 * 179.97438 * 13 12 10 31 31 H 1.08995 * 109.47755 * 330.00225 * 18 9 7 32 32 H 1.09007 * 109.47538 * 210.00175 * 18 9 7 33 33 H 1.08000 * 126.74802 * 359.93522 * 20 19 18 34 34 H 1.08002 * 120.01609 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2671 -1.1718 0.3016 5 6 4.6429 -1.1750 0.2960 6 6 5.3440 -0.0022 0.0000 7 6 6.8200 -0.0043 0.0002 8 8 7.4291 0.6268 -0.8423 9 7 7.4929 -0.7055 0.9341 10 6 6.8094 -1.3633 1.9194 11 1 5.9047 -0.9365 2.3265 12 6 7.2797 -2.5822 2.3973 13 7 6.9400 -2.9919 3.5980 14 14 8.3944 -3.6361 1.3315 15 1 9.8036 -3.2025 1.5089 16 1 8.2604 -5.0599 1.7316 17 1 8.0054 -3.4836 -0.0935 18 6 8.9561 -0.7631 0.8937 19 6 9.5261 0.3751 1.7003 20 6 9.9204 1.5836 1.2352 21 7 10.3567 2.2744 2.2944 22 7 10.2397 1.5425 3.3457 23 7 9.7449 0.3954 3.0355 24 1 9.5610 -0.3299 3.6525 25 6 4.6454 1.1722 -0.3021 26 9 5.3212 2.3049 -0.5943 27 6 3.2650 1.1719 -0.3017 28 1 2.7266 -2.0773 0.5348 29 1 5.1815 -2.0827 0.5244 30 1 7.2677 -3.8419 3.9311 31 1 9.2946 -0.6817 -0.1392 32 1 9.2942 -1.7107 1.3132 33 1 9.8895 1.9230 0.2104 34 1 2.7244 2.0775 -0.5342 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577706744.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:07 Heat of formation + Delta-G solvation = 79.158066 kcal Electronic energy + Delta-G solvation = -25608.533674 eV Core-core repulsion = 21651.816992 eV Total energy + Delta-G solvation = -3956.716682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.89598 -44.27860 -41.17648 -39.67281 -37.44319 -37.08397 -34.43065 -34.10136 -33.29022 -32.06984 -31.66284 -28.25475 -27.17136 -25.48047 -23.98237 -23.71890 -22.98016 -21.34647 -20.32030 -19.90098 -19.20680 -18.02268 -17.79116 -17.33337 -16.99024 -16.81771 -16.47990 -16.40638 -16.07484 -15.34564 -15.11810 -15.00714 -14.94329 -14.83967 -14.56871 -14.36017 -14.33402 -13.79154 -13.59235 -13.19552 -12.98082 -12.90519 -12.68149 -12.48277 -12.34711 -12.02258 -11.78436 -11.57138 -11.14469 -10.72711 -10.19553 -10.09408 -9.95250 -9.77191 -8.52604 -6.11980 -0.63457 0.17211 0.50664 1.18734 1.40063 1.47297 1.49615 1.51378 1.54435 1.85584 2.09080 2.15968 2.45685 2.61420 2.72141 2.96691 3.30500 3.56200 3.69010 3.79126 3.87714 3.96827 4.00370 4.19836 4.35673 4.43025 4.60782 4.66176 4.84843 5.01698 5.16718 5.19307 5.23427 5.29016 5.68693 5.92168 5.99669 6.20087 6.33578 6.87330 7.24701 7.40656 7.62105 8.57920 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.005457 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.265862 B = 5130.042907 C = 6407.170472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.286 3.714 3 C 0.014 3.986 4 C -0.077 4.077 5 C -0.034 4.034 6 C -0.124 4.124 7 C 0.511 3.489 8 O -0.590 6.590 9 N -0.450 5.450 10 C -0.350 4.350 11 H 0.093 0.907 12 C 0.049 3.951 13 N -0.869 5.869 14 Si 0.898 3.102 15 H -0.250 1.250 16 H -0.286 1.286 17 H -0.252 1.252 18 C 0.155 3.845 19 C -0.005 4.005 20 C -0.040 4.040 21 N -0.296 5.296 22 N -0.103 5.103 23 N -0.365 5.365 24 H 0.457 0.543 25 C 0.119 3.881 26 F -0.135 7.135 27 C -0.106 4.106 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.285 0.715 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.202 0.798 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -1.816 -5.012 5.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.029 4.029 3 C 0.011 3.989 4 C -0.098 4.098 5 C -0.052 4.052 6 C -0.128 4.128 7 C 0.302 3.698 8 O -0.475 6.475 9 N -0.170 5.170 10 C -0.477 4.477 11 H 0.111 0.889 12 C -0.159 4.159 13 N -0.503 5.503 14 Si 0.723 3.277 15 H -0.177 1.177 16 H -0.213 1.213 17 H -0.176 1.176 18 C 0.031 3.969 19 C -0.141 4.141 20 C -0.198 4.198 21 N -0.162 5.162 22 N -0.083 5.083 23 N -0.088 5.088 24 H 0.304 0.696 25 C 0.098 3.902 26 F -0.114 7.114 27 C -0.127 4.127 28 H 0.186 0.814 29 H 0.177 0.823 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.218 0.782 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.522 -0.606 -4.182 4.921 hybrid contribution 0.602 -1.445 -0.489 1.640 sum -1.920 -2.050 -4.671 5.451 Atomic orbital electron populations 1.81281 1.12712 1.08380 1.09627 1.25379 0.92085 0.92749 0.92728 1.15680 0.83879 0.94827 1.04549 1.21415 0.93254 0.97890 0.97209 1.21549 0.93659 0.97862 0.92166 1.20239 0.93951 0.94780 1.03877 1.18393 0.87509 0.82511 0.81428 1.90695 1.69946 1.46858 1.39978 1.43597 1.03502 1.45297 1.24614 1.18982 1.11558 1.02996 1.14188 0.88950 1.25647 0.97886 0.97077 0.95277 1.69783 1.43626 1.22134 1.14800 0.86720 0.80171 0.78947 0.81824 1.17704 1.21261 1.17600 1.20568 0.81834 0.94290 1.00203 1.22755 1.05453 1.00943 0.84968 1.23684 1.03974 0.91333 1.00850 1.74995 1.19186 1.25681 0.96344 1.78126 1.17175 0.91520 1.21512 1.45084 1.41280 1.14165 1.08265 0.69555 1.17572 0.89989 0.81732 1.00898 1.91526 1.80637 1.48614 1.90602 1.21033 0.90717 0.99697 1.01212 0.81374 0.82284 0.90496 0.86587 0.88660 0.78159 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.83 18.54 19.00 0.35 -11.48 16 2 C 0.29 6.48 15.32 88.33 1.35 7.83 16 3 C 0.01 0.31 5.73 -21.33 -0.12 0.19 16 4 C -0.08 -1.70 9.73 22.49 0.22 -1.48 16 5 C -0.03 -0.96 7.85 22.49 0.18 -0.78 16 6 C -0.12 -4.16 5.24 -20.01 -0.10 -4.26 16 7 C 0.51 19.98 7.16 86.72 0.62 20.61 16 8 O -0.59 -25.21 15.81 -4.08 -0.06 -25.27 16 9 N -0.45 -17.10 2.19 -643.17 -1.41 -18.51 16 10 C -0.35 -13.92 6.89 84.13 0.58 -13.34 16 11 H 0.09 4.04 6.80 -2.91 -0.02 4.02 16 12 C 0.05 1.94 5.30 84.98 0.45 2.39 16 13 N -0.87 -37.42 13.95 21.69 0.30 -37.11 16 14 Si 0.90 30.66 25.43 68.60 1.74 32.40 16 15 H -0.25 -7.87 6.19 99.48 0.62 -7.25 16 16 H -0.29 -10.06 7.11 99.48 0.71 -9.36 16 17 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 18 C 0.16 5.36 4.77 85.64 0.41 5.77 16 19 C -0.01 -0.18 6.89 41.36 0.28 0.10 16 20 C -0.04 -1.43 11.99 83.73 1.00 -0.43 16 21 N -0.30 -11.37 12.41 -58.25 -0.72 -12.09 16 22 N -0.10 -3.84 13.38 37.02 0.50 -3.34 16 23 N -0.37 -12.48 6.98 -47.78 -0.33 -12.81 16 24 H 0.46 13.92 8.96 -219.96 -1.97 11.94 16 25 C 0.12 3.65 7.23 22.64 0.16 3.81 16 26 F -0.14 -4.75 16.19 44.97 0.73 -4.03 16 27 C -0.11 -2.44 9.71 22.55 0.22 -2.22 16 28 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.16 4.77 6.37 -2.91 -0.02 4.75 16 30 H 0.28 11.55 8.31 -92.71 -0.77 10.78 16 31 H 0.12 3.75 7.47 -2.39 -0.02 3.73 16 32 H 0.10 3.16 2.77 -2.38 -0.01 3.15 16 33 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 34 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -53.45 313.94 5.50 -47.95 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.85 Total: 26.10 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 5.25 Total: 18.19 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -1.32 Total: -95.35 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.06 Total: -25.27 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.73 Total: -4.03 kcal Atomic # 14 Polarization: 30.66 SS G_CDS: 1.74 Total: 32.40 kcal Total: -53.45 5.50 -47.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706744.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.110 kcal (2) G-P(sol) polarization free energy of solvation -53.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds