Wall clock time and date at job start Tue Mar 31 2020 11:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48500 * 109.47524 * 270.00491 * 3 2 1 5 5 H 1.48506 * 109.47168 * 30.00024 * 3 2 1 6 6 H 1.48502 * 109.47299 * 150.00001 * 3 2 1 7 7 C 1.37883 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99240 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.53012 * 109.47090 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46192 * 304.99939 * 11 10 9 13 13 N 1.46901 * 109.46997 * 64.99657 * 11 10 9 14 14 C 1.50699 * 109.46866 * 185.00091 * 11 10 9 15 15 O 1.21286 * 119.99719 * 259.99016 * 14 11 10 16 16 N 1.34776 * 120.00330 * 80.00000 * 14 11 10 17 17 N 1.40098 * 120.00053 * 179.97438 * 16 14 11 18 18 C 1.39839 * 119.99746 * 180.02562 * 17 16 14 19 19 C 1.38809 * 120.07568 * 359.97438 * 18 17 16 20 20 C 1.38262 * 119.94102 * 180.02562 * 19 18 17 21 21 Cl 1.73594 * 119.96107 * 179.97438 * 20 19 18 22 22 C 1.38389 * 120.08017 * 0.02562 * 20 19 18 23 23 C 1.38272 * 120.14993 * 359.97438 * 22 20 19 24 24 C 1.38281 * 120.06411 * 0.02562 * 23 22 20 25 25 F 1.35095 * 120.04449 * 180.27698 * 24 23 22 26 26 H 0.97002 * 120.00235 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46673 * 60.00056 * 9 7 2 28 28 H 1.09002 * 109.47084 * 300.00396 * 9 7 2 29 29 H 1.08997 * 109.47691 * 60.00293 * 10 9 7 30 30 H 1.09002 * 109.47223 * 299.99924 * 10 9 7 31 31 H 1.00898 * 110.99692 * 60.00496 * 13 11 10 32 32 H 1.00900 * 110.99379 * 183.95521 * 13 11 10 33 33 H 0.97003 * 119.99513 * 359.97438 * 16 14 11 34 34 H 0.96998 * 119.99918 * 359.97438 * 17 16 14 35 35 H 1.07997 * 120.03100 * 0.02562 * 19 18 17 36 36 H 1.08003 * 119.92439 * 180.02562 * 22 20 19 37 37 H 1.08000 * 119.97396 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 1 0.7879 -5.0072 0.8405 13 7 0.7289 -5.1182 -1.2567 14 6 2.4550 -6.1298 0.1227 15 8 2.7870 -6.7532 -0.8633 16 7 2.9575 -6.4593 1.3291 17 7 3.8632 -7.5219 1.4442 18 6 4.3841 -7.8640 2.6961 19 6 4.0054 -7.1514 3.8255 20 6 4.5226 -7.4917 5.0617 21 17 4.0498 -6.6005 6.4744 22 6 5.4176 -8.5412 5.1742 23 6 5.7973 -9.2534 4.0515 24 6 5.2838 -8.9183 2.8120 25 9 5.6507 -9.6180 1.7162 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6044 0.8894 30 1 2.8720 -3.6043 -0.8905 31 1 1.3490 -5.1022 -2.0525 32 1 0.1646 -5.9546 -1.2546 33 1 2.6920 -5.9605 2.1176 34 1 4.1283 -8.0208 0.6558 35 1 3.3073 -6.3319 3.7386 36 1 5.8197 -8.8051 6.1412 37 1 6.4956 -10.0723 4.1425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580049026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:10 Heat of formation + Delta-G solvation = -34.745258 kcal Electronic energy + Delta-G solvation = -22969.443375 eV Core-core repulsion = 19108.894968 eV Total energy + Delta-G solvation = -3860.548407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.19473 -40.39941 -39.41305 -37.03526 -36.21435 -35.32195 -32.89749 -32.38778 -30.87824 -30.22247 -28.75922 -26.36766 -24.16855 -23.20845 -22.64875 -21.06933 -20.19175 -18.79181 -18.09178 -17.56732 -16.79285 -16.41192 -16.18154 -16.07043 -15.66117 -15.30013 -14.98355 -14.71469 -14.39091 -14.23205 -13.81973 -13.74829 -13.59882 -12.82037 -12.69095 -12.41227 -12.12990 -11.91418 -11.68369 -11.33830 -11.31080 -10.93822 -10.84469 -10.64099 -10.38255 -9.91675 -9.80486 -9.47605 -9.12800 -9.07450 -8.57184 -8.30588 -7.65382 -5.98721 -4.01225 0.56823 0.82827 1.56527 1.76679 2.45429 3.07023 3.32374 3.38940 3.41590 3.73211 3.85149 4.23138 4.45092 4.54435 4.61834 4.77007 4.85974 5.03261 5.17838 5.31639 5.37610 5.47790 5.62354 5.66395 5.76678 6.05117 6.28229 6.41000 6.53909 6.90182 6.97678 7.25715 7.37445 7.61694 7.69579 7.88241 8.05503 8.08687 8.41844 9.06362 9.62441 11.12083 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003082 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.426838 B = 9083.715748 C =10593.086710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.098 4.098 11 C 0.091 3.909 12 H 0.105 0.895 13 N -0.800 5.800 14 C 0.482 3.518 15 O -0.550 6.550 16 N -0.523 5.523 17 N -0.535 5.535 18 C 0.208 3.792 19 C -0.173 4.173 20 C 0.013 3.987 21 Cl -0.056 7.056 22 C -0.145 4.145 23 C -0.085 4.085 24 C 0.027 3.973 25 F -0.137 7.137 26 H 0.260 0.740 27 H 0.036 0.964 28 H 0.015 0.985 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.351 0.649 32 H 0.337 0.663 33 H 0.425 0.575 34 H 0.439 0.561 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.713 -19.757 11.195 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.136 4.136 11 C -0.026 4.026 12 H 0.123 0.877 13 N -0.328 5.328 14 C 0.268 3.732 15 O -0.425 6.425 16 N -0.271 5.271 17 N -0.259 5.259 18 C 0.101 3.899 19 C -0.197 4.197 20 C -0.015 4.015 21 Cl -0.027 7.027 22 C -0.166 4.166 23 C -0.105 4.105 24 C 0.002 3.998 25 F -0.115 7.115 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.267 0.733 34 H 0.283 0.717 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.239 -19.157 10.684 23.431 hybrid contribution 1.087 0.026 -0.105 1.092 sum 9.326 -19.131 10.579 23.767 Atomic orbital electron populations 1.69967 1.05952 1.26519 1.50638 1.24985 0.94812 0.99093 0.95370 0.86644 0.79834 0.83689 0.78107 1.20702 1.21248 1.19974 1.21249 0.92914 0.91237 1.50884 0.92946 1.19023 0.93483 0.89702 0.98369 1.21745 0.99008 0.91848 1.01036 1.21900 0.92944 0.92122 0.95672 0.87739 1.59039 1.26438 1.44300 1.03028 1.23475 0.82402 0.86262 0.81055 1.90685 1.61112 1.54133 1.36584 1.45474 1.41650 1.28024 1.11942 1.43322 1.44918 1.30442 1.07268 1.17545 0.93411 0.93615 0.85379 1.20182 1.06244 1.03744 0.89548 1.20588 0.97918 0.94981 0.88002 1.98404 1.90972 1.74385 1.38980 1.20680 1.00102 0.96413 0.99438 1.20857 0.99627 1.00270 0.89715 1.17000 1.02749 0.95658 0.84414 1.91491 1.90586 1.77504 1.51959 0.93033 0.94546 0.96702 0.92613 0.92516 0.83490 0.85090 0.73282 0.71734 0.84226 0.84017 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.03 0.76 4.86 -27.89 -0.14 0.63 16 10 C -0.10 -1.84 4.78 -26.73 -0.13 -1.97 16 11 C 0.09 1.38 3.15 -68.86 -0.22 1.17 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 13 N -0.80 -12.33 8.44 -5.65 -0.05 -12.38 16 14 C 0.48 6.97 7.18 -10.99 -0.08 6.89 16 15 O -0.55 -9.37 16.09 5.55 0.09 -9.28 16 16 N -0.52 -6.25 6.22 31.22 0.19 -6.06 16 17 N -0.54 -6.28 6.46 32.46 0.21 -6.07 16 18 C 0.21 2.16 6.73 -83.68 -0.56 1.60 16 19 C -0.17 -1.64 9.26 -39.36 -0.36 -2.01 16 20 C 0.01 0.11 6.32 -39.52 -0.25 -0.14 16 21 Cl -0.06 -0.49 28.95 -51.86 -1.50 -2.00 16 22 C -0.15 -1.07 9.82 -39.51 -0.39 -1.46 16 23 C -0.08 -0.64 10.02 -39.55 -0.40 -1.03 16 24 C 0.03 0.26 7.31 -39.25 -0.29 -0.02 16 25 F -0.14 -1.46 16.64 2.25 0.04 -1.42 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.35 5.51 8.58 -39.29 -0.34 5.17 16 32 H 0.34 4.44 9.06 -39.29 -0.36 4.08 16 33 H 0.42 4.20 6.61 -182.60 -1.21 3.00 16 34 H 0.44 5.46 7.49 -182.60 -1.37 4.10 16 35 H 0.14 1.21 6.20 -52.49 -0.33 0.88 16 36 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -31.58 341.37 -9.45 -41.03 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.07 Total: 9.75 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.22 Total: -9.51 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 1.09 Total: -50.10 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.58 -9.45 -41.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580049026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.288 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds