Wall clock time and date at job start Tue Mar 31 2020 11:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48500 * 109.47524 * 270.00491 * 3 2 1 5 5 H 1.48506 * 109.47168 * 30.00024 * 3 2 1 6 6 H 1.48502 * 109.47299 * 150.00001 * 3 2 1 7 7 C 1.37883 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99240 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00341 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.46973 * 180.02562 * 9 7 2 11 11 C 1.53012 * 109.47090 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46192 * 304.99939 * 11 10 9 13 13 N 1.46901 * 109.46997 * 64.99657 * 11 10 9 14 14 C 1.50699 * 109.46866 * 185.00091 * 11 10 9 15 15 O 1.21286 * 119.99719 * 259.99016 * 14 11 10 16 16 N 1.34776 * 120.00330 * 80.00000 * 14 11 10 17 17 N 1.40098 * 120.00053 * 179.97438 * 16 14 11 18 18 C 1.39839 * 119.99746 * 180.02562 * 17 16 14 19 19 C 1.38809 * 120.07568 * 359.97438 * 18 17 16 20 20 C 1.38262 * 119.94102 * 180.02562 * 19 18 17 21 21 Cl 1.73594 * 119.96107 * 179.97438 * 20 19 18 22 22 C 1.38389 * 120.08017 * 0.02562 * 20 19 18 23 23 C 1.38272 * 120.14993 * 359.97438 * 22 20 19 24 24 C 1.38281 * 120.06411 * 0.02562 * 23 22 20 25 25 F 1.35095 * 120.04449 * 180.27698 * 24 23 22 26 26 H 0.97002 * 120.00235 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46673 * 60.00056 * 9 7 2 28 28 H 1.09002 * 109.47084 * 300.00396 * 9 7 2 29 29 H 1.08997 * 109.47691 * 60.00293 * 10 9 7 30 30 H 1.09002 * 109.47223 * 299.99924 * 10 9 7 31 31 H 1.00898 * 110.99692 * 60.00496 * 13 11 10 32 32 H 1.00900 * 110.99379 * 183.95521 * 13 11 10 33 33 H 0.97003 * 119.99513 * 359.97438 * 16 14 11 34 34 H 0.96998 * 119.99918 * 359.97438 * 17 16 14 35 35 H 1.07997 * 120.03100 * 0.02562 * 19 18 17 36 36 H 1.08003 * 119.92439 * 180.02562 * 22 20 19 37 37 H 1.08000 * 119.97396 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 1 0.7879 -5.0072 0.8405 13 7 0.7289 -5.1182 -1.2567 14 6 2.4550 -6.1298 0.1227 15 8 2.7870 -6.7532 -0.8633 16 7 2.9575 -6.4593 1.3291 17 7 3.8632 -7.5219 1.4442 18 6 4.3841 -7.8640 2.6961 19 6 4.0054 -7.1514 3.8255 20 6 4.5226 -7.4917 5.0617 21 17 4.0498 -6.6005 6.4744 22 6 5.4176 -8.5412 5.1742 23 6 5.7973 -9.2534 4.0515 24 6 5.2838 -8.9183 2.8120 25 9 5.6507 -9.6180 1.7162 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6044 0.8894 30 1 2.8720 -3.6043 -0.8905 31 1 1.3490 -5.1022 -2.0525 32 1 0.1646 -5.9546 -1.2546 33 1 2.6920 -5.9605 2.1176 34 1 4.1283 -8.0208 0.6558 35 1 3.3073 -6.3319 3.7386 36 1 5.8197 -8.8051 6.1412 37 1 6.4956 -10.0723 4.1425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580049026.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:10 Heat of formation + Delta-G solvation = -56.246991 kcal Electronic energy + Delta-G solvation = -22970.375760 eV Core-core repulsion = 19108.894968 eV Total energy + Delta-G solvation = -3861.480792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.96258 -41.44230 -40.24714 -37.83029 -37.12869 -36.69739 -34.83832 -33.29392 -31.95354 -31.56234 -29.64120 -27.94886 -25.61329 -24.14004 -23.46492 -22.48320 -21.52710 -19.72297 -19.07776 -18.48678 -18.21025 -17.69687 -17.10669 -16.99438 -16.82356 -16.48812 -16.08449 -16.03028 -15.77952 -15.17910 -14.87513 -14.52423 -14.49874 -14.29412 -13.87444 -13.57100 -13.47048 -13.39954 -12.81295 -12.58765 -12.54722 -12.30159 -12.09105 -11.97946 -11.87603 -11.69069 -11.29827 -11.05763 -10.64392 -10.48138 -9.83288 -9.78301 -8.50757 -8.13227 -6.22783 -0.12339 0.14260 0.65544 1.05888 1.30445 1.42978 1.43616 1.53961 2.38676 2.44974 2.88371 3.03405 3.20374 3.44571 3.59889 3.66864 3.97260 4.03741 4.10945 4.24512 4.31439 4.55368 4.74911 4.77575 4.89537 5.05650 5.12035 5.22317 5.28231 5.58640 5.63726 5.85293 5.91678 5.99810 6.10374 6.31083 6.40806 6.47279 6.96048 7.03393 7.45304 8.97767 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003082 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.426838 B = 9083.715748 C =10593.086710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.085 4.085 11 C 0.100 3.900 12 H 0.122 0.878 13 N -0.812 5.812 14 C 0.489 3.511 15 O -0.577 6.577 16 N -0.509 5.509 17 N -0.544 5.544 18 C 0.191 3.809 19 C -0.178 4.178 20 C 0.004 3.996 21 Cl -0.057 7.057 22 C -0.133 4.133 23 C -0.077 4.077 24 C 0.016 3.984 25 F -0.145 7.145 26 H 0.262 0.738 27 H 0.008 0.992 28 H -0.001 1.001 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.348 0.652 32 H 0.350 0.650 33 H 0.435 0.565 34 H 0.434 0.566 35 H 0.144 0.856 36 H 0.168 0.832 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.200 -20.419 12.806 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.124 4.124 11 C -0.017 4.017 12 H 0.140 0.860 13 N -0.341 5.341 14 C 0.274 3.726 15 O -0.455 6.455 16 N -0.257 5.257 17 N -0.270 5.270 18 C 0.086 3.914 19 C -0.202 4.202 20 C -0.023 4.023 21 Cl -0.028 7.028 22 C -0.154 4.154 23 C -0.096 4.096 24 C -0.009 4.009 25 F -0.124 7.124 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.017 0.983 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.279 0.721 34 H 0.277 0.723 35 H 0.162 0.838 36 H 0.185 0.815 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.741 -19.833 12.359 25.318 hybrid contribution 0.657 0.164 -0.498 0.840 sum 10.398 -19.670 11.861 25.213 Atomic orbital electron populations 1.70091 1.07525 1.27473 1.51750 1.25853 0.95668 1.02867 0.95073 0.85588 0.78814 0.79235 0.78234 1.20301 1.20815 1.18864 1.21729 0.93354 0.92764 1.50292 0.92677 1.18835 0.93853 0.91051 0.96131 1.21463 0.97863 0.91844 1.01184 1.21655 0.93076 0.90694 0.96309 0.85998 1.59024 1.26738 1.45328 1.03033 1.23014 0.82251 0.86009 0.81334 1.90675 1.62023 1.55136 1.37652 1.45201 1.40993 1.27893 1.11575 1.43323 1.45398 1.30494 1.07742 1.17693 0.94245 0.94452 0.84986 1.20292 1.06402 1.03837 0.89702 1.20740 0.98358 0.95519 0.87722 1.98407 1.91037 1.74505 1.38834 1.21025 0.98730 0.95127 1.00528 1.21189 0.99260 1.00570 0.88584 1.17306 1.02995 0.95624 0.85005 1.91471 1.90680 1.77662 1.52573 0.92950 0.97352 0.98275 0.91177 0.93628 0.83820 0.83637 0.72090 0.72309 0.83840 0.81451 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.04 1.91 4.86 29.84 0.15 2.05 16 10 C -0.09 -3.19 4.78 30.60 0.15 -3.04 16 11 C 0.10 3.00 3.15 44.17 0.14 3.14 16 12 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 13 N -0.81 -25.12 8.44 -171.78 -1.45 -26.57 16 14 C 0.49 13.84 7.18 87.66 0.63 14.47 16 15 O -0.58 -19.58 16.09 -3.05 -0.05 -19.63 16 16 N -0.51 -11.74 6.22 -173.53 -1.08 -12.82 16 17 N -0.54 -12.44 6.46 -51.22 -0.33 -12.77 16 18 C 0.19 3.77 6.73 38.20 0.26 4.03 16 19 C -0.18 -3.14 9.26 22.41 0.21 -2.93 16 20 C 0.00 0.07 6.32 22.31 0.14 0.21 16 21 Cl -0.06 -0.89 28.95 -2.72 -0.08 -0.97 16 22 C -0.13 -1.56 9.82 22.31 0.22 -1.34 16 23 C -0.08 -0.93 10.02 22.29 0.22 -0.71 16 24 C 0.02 0.28 7.31 22.48 0.16 0.45 16 25 F -0.14 -2.95 16.64 44.97 0.75 -2.20 16 26 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.01 0.44 7.75 -2.39 -0.02 0.42 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.35 11.09 8.58 -89.70 -0.77 10.32 16 32 H 0.35 9.12 9.06 -89.69 -0.81 8.31 16 33 H 0.43 8.09 6.61 -213.32 -1.41 6.68 16 34 H 0.43 10.76 7.49 -213.32 -1.60 9.16 16 35 H 0.14 2.30 6.20 -2.91 -0.02 2.28 16 36 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 37 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -67.80 341.37 -0.38 -68.18 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -3.42 Total: 28.97 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 2.97 Total: -12.81 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -2.57 Total: -107.36 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.75 Total: -2.20 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -67.80 -0.38 -68.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580049026.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.938 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds