Wall clock time and date at job start Tue Mar 31 2020 11:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 N 1.46898 * 109.47092 * 295.00148 * 12 11 10 15 15 C 1.50699 * 109.47482 * 174.99860 * 12 11 10 16 16 O 1.21286 * 119.99857 * 100.00182 * 15 12 11 17 17 N 1.34781 * 120.00160 * 279.99980 * 15 12 11 18 18 C 1.39555 * 119.99992 * 179.97438 * 17 15 12 19 19 N 1.32321 * 119.67484 * 359.73367 * 18 17 15 20 20 C 1.31934 * 121.67484 * 179.74992 * 19 18 17 21 21 C 1.38319 * 120.83038 * 0.52177 * 20 19 18 22 22 F 1.35105 * 120.36249 * 179.76357 * 21 20 19 23 23 C 1.38962 * 119.27263 * 359.74539 * 21 20 19 24 24 C 1.38483 * 118.46399 * 359.97438 * 23 21 20 25 25 Cl 1.73598 * 120.44782 * 179.97438 * 24 23 21 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.00906 * 111.00043 * 176.04212 * 14 12 11 34 34 H 1.00899 * 111.00057 * 299.99390 * 14 12 11 35 35 H 0.96994 * 119.99782 * 0.02562 * 17 15 12 36 36 H 1.08000 * 119.58743 * 180.24605 * 20 19 18 37 37 H 1.08008 * 120.76956 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 1 3.1586 -6.0426 0.8437 14 7 3.2377 -6.1424 -1.2533 15 6 1.7253 -7.4515 0.1263 16 8 1.5130 -8.1257 -0.8593 17 7 1.2909 -7.8664 1.3329 18 6 0.5965 -9.0714 1.4481 19 7 0.3635 -9.7990 0.3677 20 6 -0.2846 -10.9464 0.4318 21 6 -0.7564 -11.4276 1.6397 22 9 -1.4231 -12.6015 1.6937 23 6 -0.5368 -10.6906 2.7972 24 6 0.1518 -9.4933 2.6965 25 17 0.4542 -8.5310 4.1094 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8905 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0452 -0.8885 33 1 3.9455 -6.8616 -1.2505 34 1 2.6256 -6.2407 -2.0493 35 1 1.4603 -7.3270 2.1210 36 1 -0.4528 -11.5150 -0.4709 37 1 -0.8942 -11.0437 3.7532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:50 Heat of formation + Delta-G solvation = -76.115115 kcal Electronic energy + Delta-G solvation = -22912.537428 eV Core-core repulsion = 19050.195089 eV Total energy + Delta-G solvation = -3862.342339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.06172 -42.15522 -40.52398 -37.92528 -37.21613 -36.17138 -35.24388 -33.56199 -33.12356 -31.09167 -29.52506 -27.04720 -25.62017 -24.79962 -23.62282 -21.81301 -21.43232 -19.62583 -18.93455 -18.80331 -18.42908 -17.64803 -17.18155 -17.02548 -16.46082 -16.41079 -16.20663 -15.89116 -15.52397 -15.16498 -14.93972 -14.85815 -14.52830 -14.27776 -14.00120 -13.64103 -13.28337 -13.11701 -12.85314 -12.51094 -12.41089 -12.34828 -12.20399 -11.94173 -11.70622 -11.38147 -11.23360 -11.03742 -10.91469 -10.69727 -10.50502 -9.74551 -9.41164 -8.15928 -6.26077 -0.51537 -0.24582 0.68210 1.34369 1.42476 1.43651 1.54402 1.54903 2.34827 2.44379 2.80960 3.01943 3.17431 3.34120 3.48134 3.59243 3.79643 3.84606 3.95825 4.12798 4.24112 4.51097 4.56423 4.66333 4.92057 4.94302 5.14273 5.27435 5.30712 5.36296 5.62597 5.79193 5.86357 5.95794 6.04925 6.31828 6.43955 6.55169 6.92183 6.95163 7.43027 8.95868 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.002559 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.957064 B =10937.688969 C =11572.723401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.083 4.083 11 C -0.097 4.097 12 C 0.092 3.908 13 H 0.131 0.869 14 N -0.814 5.814 15 C 0.480 3.520 16 O -0.507 6.507 17 N -0.649 5.649 18 C 0.351 3.649 19 N -0.471 5.471 20 C 0.110 3.890 21 C 0.031 3.969 22 F -0.123 7.123 23 C -0.062 4.062 24 C -0.103 4.103 25 Cl -0.025 7.025 26 H 0.262 0.738 27 H -0.016 1.016 28 H -0.008 1.008 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.352 0.648 34 H 0.348 0.652 35 H 0.431 0.569 36 H 0.195 0.805 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -25.439 8.341 26.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.016 4.016 10 C -0.121 4.121 11 C -0.135 4.135 12 C -0.024 4.024 13 H 0.148 0.852 14 N -0.343 5.343 15 C 0.265 3.735 16 O -0.378 6.378 17 N -0.298 5.298 18 C 0.118 3.882 19 N -0.185 5.185 20 C -0.049 4.049 21 C 0.008 3.992 22 F -0.101 7.101 23 C -0.089 4.089 24 C -0.136 4.136 25 Cl 0.004 6.996 26 H 0.071 0.929 27 H 0.002 0.998 28 H 0.011 0.989 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.272 0.728 36 H 0.212 0.788 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.777 -24.595 7.097 25.660 hybrid contribution -0.796 -0.158 1.000 1.288 sum 0.981 -24.753 8.097 26.062 Atomic orbital electron populations 1.70100 1.07809 1.27594 1.52163 1.25981 0.95734 1.03344 0.94989 0.85487 0.78798 0.78628 0.78385 1.20048 1.20889 1.18511 1.21744 0.93615 0.92432 1.49787 0.92084 1.19061 0.94605 0.93498 0.94475 1.21282 0.97517 0.91786 1.01526 1.21501 0.96734 0.93337 1.01975 1.21693 0.95415 0.88481 0.96792 0.85169 1.59051 1.17415 1.54880 1.02939 1.23029 0.79012 0.89226 0.82241 1.90776 1.53808 1.56321 1.36851 1.43993 1.53655 1.19479 1.12707 1.18570 0.92760 0.88466 0.88379 1.67924 1.15742 1.06469 1.28354 1.23331 0.92161 0.91202 0.98230 1.18502 1.00443 0.85387 0.94890 1.91560 1.77880 1.43680 1.97016 1.21637 0.95307 0.91322 1.00632 1.21222 1.07197 0.97025 0.88180 1.98419 1.94501 1.69720 1.36965 0.92938 0.99798 0.98921 0.92286 0.92301 0.90884 0.93282 0.83453 0.83810 0.72760 0.78781 0.79359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.08 -3.25 5.04 30.59 0.15 -3.09 16 11 C -0.10 -3.01 4.84 30.59 0.15 -2.86 16 12 C 0.09 2.22 3.15 44.17 0.14 2.36 16 13 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 14 N -0.81 -19.87 8.44 -171.81 -1.45 -21.32 16 15 C 0.48 12.15 7.03 87.66 0.62 12.77 16 16 O -0.51 -15.94 14.50 -3.05 -0.04 -15.98 16 17 N -0.65 -13.75 5.36 -308.30 -1.65 -15.40 16 18 C 0.35 7.67 7.43 132.89 0.99 8.66 16 19 N -0.47 -11.51 7.87 -192.71 -1.52 -13.03 16 20 C 0.11 1.99 11.16 84.70 0.95 2.93 16 21 C 0.03 0.47 7.34 22.46 0.16 0.63 16 22 F -0.12 -1.81 17.28 44.97 0.78 -1.03 16 23 C -0.06 -0.83 9.96 22.50 0.22 -0.61 16 24 C -0.10 -1.72 6.36 22.53 0.14 -1.57 16 25 Cl -0.02 -0.35 27.62 -2.72 -0.08 -0.43 16 26 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.06 2.36 7.75 -2.39 -0.02 2.35 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.35 7.18 9.06 -89.69 -0.81 6.37 16 34 H 0.35 9.14 8.58 -89.69 -0.77 8.37 16 35 H 0.43 7.13 7.36 -92.71 -0.68 6.45 16 36 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -71.53 340.84 1.60 -69.93 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -1.12 Total: 17.58 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.37 Total: -9.62 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.33 Total: -106.87 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.04 Total: -15.98 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.78 Total: -1.03 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -71.53 1.60 -69.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.187 kcal (2) G-P(sol) polarization free energy of solvation -71.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds