Wall clock time and date at job start Tue Mar 31 2020 11:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46955 * 300.00025 * 3 2 1 6 6 H 1.48499 * 109.47200 * 59.99616 * 3 2 1 7 7 C 1.37875 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99505 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00485 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47836 * 305.00199 * 12 11 10 14 14 N 1.46906 * 109.46987 * 65.00027 * 12 11 10 15 15 C 1.50701 * 109.47012 * 184.99957 * 12 11 10 16 16 O 1.21280 * 119.99887 * 259.99586 * 15 12 11 17 17 N 1.34777 * 119.99993 * 80.00326 * 15 12 11 18 18 C 1.39560 * 120.00020 * 179.97438 * 17 15 12 19 19 N 1.32326 * 119.67365 * 359.72356 * 18 17 15 20 20 C 1.31930 * 121.66664 * 179.75500 * 19 18 17 21 21 C 1.38312 * 120.83971 * 0.52307 * 20 19 18 22 22 F 1.35105 * 120.36399 * 179.76615 * 21 20 19 23 23 C 1.38965 * 119.27112 * 359.74602 * 21 20 19 24 24 C 1.38493 * 118.46302 * 359.97438 * 23 21 20 25 25 Cl 1.73596 * 120.44696 * 179.97438 * 24 23 21 26 26 H 0.96997 * 119.99978 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46806 * 60.00309 * 9 7 2 28 28 H 1.09003 * 109.47006 * 300.00369 * 9 7 2 29 29 H 1.08993 * 109.47353 * 60.00289 * 10 9 7 30 30 H 1.09003 * 109.47229 * 299.99879 * 10 9 7 31 31 H 1.09003 * 109.46794 * 59.99947 * 11 10 9 32 32 H 1.09003 * 109.46953 * 300.00004 * 11 10 9 33 33 H 1.00896 * 111.00309 * 296.04346 * 14 12 11 34 34 H 1.00902 * 110.99923 * 60.00509 * 14 12 11 35 35 H 0.96996 * 120.00084 * 0.02562 * 17 15 12 36 36 H 1.07997 * 119.57685 * 180.24942 * 20 19 18 37 37 H 1.07998 * 120.77150 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0018 13 1 3.1586 -6.0428 -0.8435 14 7 3.2376 -6.1425 1.2534 15 6 1.7250 -7.4515 -0.1263 16 8 1.5128 -8.1257 0.8593 17 7 1.2907 -7.8664 -1.3328 18 6 0.5971 -9.0719 -1.4482 19 7 0.3743 -9.8053 -0.3695 20 6 -0.2810 -10.9486 -0.4325 21 6 -0.7527 -11.4298 -1.6404 22 9 -1.4185 -12.6042 -1.6946 23 6 -0.5346 -10.6919 -2.7976 24 6 0.1516 -9.4932 -2.6965 25 17 0.4532 -8.5304 -4.1092 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8539 -5.0446 -0.8914 32 1 0.8533 -5.0451 0.8886 33 1 3.7993 -5.3079 1.3301 34 1 2.6253 -6.2408 2.0494 35 1 1.4608 -7.3274 -2.1211 36 1 -0.4474 -11.5181 0.4699 37 1 -0.8927 -11.0446 -3.7535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:54 Heat of formation + Delta-G solvation = -53.454404 kcal Electronic energy + Delta-G solvation = -22915.200477 eV Core-core repulsion = 19053.840780 eV Total energy + Delta-G solvation = -3861.359697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.33473 -41.23877 -39.48793 -37.20628 -36.20543 -35.12630 -33.42294 -32.78958 -31.31186 -30.25873 -27.93555 -25.82348 -24.70599 -23.64458 -22.42975 -20.54484 -20.24217 -18.74425 -18.15449 -17.94916 -16.87775 -16.41935 -16.29614 -15.57624 -15.39865 -15.05012 -14.99062 -14.55589 -14.51501 -14.24970 -14.13398 -13.77901 -13.33572 -13.24353 -12.60915 -12.48171 -12.15344 -11.91346 -11.67600 -11.30458 -10.99188 -10.88358 -10.82742 -10.60484 -10.42193 -10.17848 -9.85179 -9.64594 -9.41930 -9.17746 -8.61921 -8.54955 -8.41865 -6.06695 -4.09801 0.27676 0.50438 1.41326 2.38391 2.44920 3.18245 3.26440 3.34387 3.37850 3.55633 3.81903 4.10022 4.31530 4.40172 4.53000 4.68737 4.72421 4.95853 5.08583 5.17880 5.24625 5.29366 5.65407 5.75452 5.85026 6.10924 6.16459 6.49164 6.65415 6.69337 6.95589 7.10086 7.43190 7.50269 7.58360 7.70208 7.92149 7.99203 8.33676 8.97558 9.55064 11.04526 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.002558 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.816011 B =10942.275952 C =11576.821817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.149 4.149 12 C 0.079 3.921 13 H 0.104 0.896 14 N -0.829 5.829 15 C 0.515 3.485 16 O -0.459 6.459 17 N -0.658 5.658 18 C 0.378 3.622 19 N -0.435 5.435 20 C 0.119 3.881 21 C 0.021 3.979 22 F -0.126 7.126 23 C -0.070 4.070 24 C -0.108 4.108 25 Cl -0.037 7.037 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.355 0.645 34 H 0.351 0.649 35 H 0.422 0.578 36 H 0.179 0.821 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 -22.747 -6.967 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.189 4.189 12 C -0.036 4.036 13 H 0.122 0.878 14 N -0.362 5.362 15 C 0.301 3.699 16 O -0.325 6.325 17 N -0.306 5.306 18 C 0.145 3.855 19 N -0.149 5.149 20 C -0.041 4.041 21 C -0.003 4.003 22 F -0.105 7.105 23 C -0.097 4.097 24 C -0.141 4.141 25 Cl -0.008 7.008 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.261 0.739 36 H 0.196 0.804 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.573 -23.303 -5.760 24.011 hybrid contribution -0.590 1.687 -1.294 2.206 sum -0.017 -21.616 -7.054 22.737 Atomic orbital electron populations 1.69974 1.06084 1.26582 1.50752 1.25038 0.94852 0.99350 0.95259 0.86540 0.80104 0.83761 0.77630 1.19709 1.20997 1.20983 1.21269 0.93045 0.91020 1.50700 0.92603 1.19086 0.93924 0.91282 0.97275 1.21658 0.99158 0.93285 1.00513 1.22456 0.98301 0.95077 1.03048 1.21437 0.95584 0.90300 0.96310 0.87828 1.58676 1.28121 1.46347 1.03043 1.21154 0.78943 0.87769 0.82032 1.90777 1.51453 1.54623 1.35691 1.43952 1.54432 1.19422 1.12778 1.18327 0.91554 0.88002 0.87645 1.68016 1.14412 1.05240 1.27197 1.23053 0.92274 0.91799 0.96972 1.18532 1.01280 0.85497 0.94955 1.91544 1.78095 1.43798 1.97037 1.21331 0.96512 0.92159 0.99675 1.21216 1.07773 0.96642 0.88451 1.98409 1.94587 1.69936 1.37870 0.93000 0.96587 0.96668 0.93178 0.92905 0.91515 0.91449 0.82910 0.83537 0.73933 0.80421 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -1.97 4.92 -26.73 -0.13 -2.10 16 11 C -0.15 -2.24 4.84 -26.73 -0.13 -2.37 16 12 C 0.08 1.02 3.21 -68.86 -0.22 0.80 16 13 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 14 N -0.83 -10.85 8.94 -5.65 -0.05 -10.90 16 15 C 0.52 7.16 7.04 -10.98 -0.08 7.08 16 16 O -0.46 -7.77 14.50 5.56 0.08 -7.69 16 17 N -0.66 -7.61 5.36 -11.38 -0.06 -7.67 16 18 C 0.38 4.44 7.43 -154.55 -1.15 3.29 16 19 N -0.43 -5.60 7.87 -12.26 -0.10 -5.69 16 20 C 0.12 1.16 11.16 -17.48 -0.20 0.97 16 21 C 0.02 0.18 7.34 -39.28 -0.29 -0.11 16 22 F -0.13 -1.08 17.28 2.25 0.04 -1.04 16 23 C -0.07 -0.56 9.96 -39.22 -0.39 -0.95 16 24 C -0.11 -1.01 6.36 -39.17 -0.25 -1.26 16 25 Cl -0.04 -0.30 27.62 -51.86 -1.43 -1.74 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.88 6.87 -51.93 -0.36 0.52 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.36 4.33 7.55 -39.29 -0.30 4.03 16 34 H 0.35 4.76 8.58 -39.29 -0.34 4.42 16 35 H 0.42 3.92 7.36 -40.82 -0.30 3.62 16 36 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -32.42 338.88 -8.29 -40.72 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.21 Total: 5.80 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.38 Total: -7.37 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.53 Total: -49.98 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.43 Total: -1.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.42 -8.29 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.737 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds