Wall clock time and date at job start Tue Mar 31 2020 11:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00131 * 2 1 4 4 H 1.48497 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46955 * 300.00025 * 3 2 1 6 6 H 1.48499 * 109.47200 * 59.99616 * 3 2 1 7 7 C 1.37875 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99505 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00485 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47085 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47836 * 305.00199 * 12 11 10 14 14 N 1.46906 * 109.46987 * 65.00027 * 12 11 10 15 15 C 1.50701 * 109.47012 * 184.99957 * 12 11 10 16 16 O 1.21280 * 119.99887 * 259.99586 * 15 12 11 17 17 N 1.34777 * 119.99993 * 80.00326 * 15 12 11 18 18 C 1.39560 * 120.00020 * 179.97438 * 17 15 12 19 19 N 1.32326 * 119.67365 * 359.72356 * 18 17 15 20 20 C 1.31930 * 121.66664 * 179.75500 * 19 18 17 21 21 C 1.38312 * 120.83971 * 0.52307 * 20 19 18 22 22 F 1.35105 * 120.36399 * 179.76615 * 21 20 19 23 23 C 1.38965 * 119.27112 * 359.74602 * 21 20 19 24 24 C 1.38493 * 118.46302 * 359.97438 * 23 21 20 25 25 Cl 1.73596 * 120.44696 * 179.97438 * 24 23 21 26 26 H 0.96997 * 119.99978 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46806 * 60.00309 * 9 7 2 28 28 H 1.09003 * 109.47006 * 300.00369 * 9 7 2 29 29 H 1.08993 * 109.47353 * 60.00289 * 10 9 7 30 30 H 1.09003 * 109.47229 * 299.99879 * 10 9 7 31 31 H 1.09003 * 109.46794 * 59.99947 * 11 10 9 32 32 H 1.09003 * 109.46953 * 300.00004 * 11 10 9 33 33 H 1.00896 * 111.00309 * 296.04346 * 14 12 11 34 34 H 1.00902 * 110.99923 * 60.00509 * 14 12 11 35 35 H 0.96996 * 120.00084 * 0.02562 * 17 15 12 36 36 H 1.07997 * 119.57685 * 180.24942 * 20 19 18 37 37 H 1.07998 * 120.77150 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0018 13 1 3.1586 -6.0428 -0.8435 14 7 3.2376 -6.1425 1.2534 15 6 1.7250 -7.4515 -0.1263 16 8 1.5128 -8.1257 0.8593 17 7 1.2907 -7.8664 -1.3328 18 6 0.5971 -9.0719 -1.4482 19 7 0.3743 -9.8053 -0.3695 20 6 -0.2810 -10.9486 -0.4325 21 6 -0.7527 -11.4298 -1.6404 22 9 -1.4185 -12.6042 -1.6946 23 6 -0.5346 -10.6919 -2.7976 24 6 0.1516 -9.4932 -2.6965 25 17 0.4532 -8.5304 -4.1092 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.8539 -5.0446 -0.8914 32 1 0.8533 -5.0451 0.8886 33 1 3.7993 -5.3079 1.3301 34 1 2.6253 -6.2408 2.0494 35 1 1.4608 -7.3274 -2.1211 36 1 -0.4474 -11.5181 0.4699 37 1 -0.8927 -11.0446 -3.7535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:53 Heat of formation + Delta-G solvation = -75.058207 kcal Electronic energy + Delta-G solvation = -22916.137288 eV Core-core repulsion = 19053.840780 eV Total energy + Delta-G solvation = -3862.296508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.03687 -42.10921 -40.45240 -37.90672 -37.48102 -36.10389 -35.27864 -33.53854 -32.99890 -31.09066 -29.40132 -27.22216 -25.60415 -24.79786 -23.72431 -21.92470 -21.42454 -19.58701 -18.96239 -18.81059 -18.46334 -17.78639 -17.09157 -16.54587 -16.39509 -16.34018 -16.10135 -16.03171 -15.50337 -15.21622 -14.98634 -14.79135 -14.54678 -14.27932 -13.98641 -13.65835 -13.65775 -13.23889 -12.94772 -12.58323 -12.43312 -12.38008 -12.33695 -11.90049 -11.53591 -11.48573 -11.34092 -11.11135 -10.89282 -10.56198 -10.47123 -9.70856 -9.38098 -8.20209 -6.31055 -0.48311 -0.21617 0.70012 1.40186 1.41030 1.44023 1.51513 1.53817 2.37575 2.41061 2.83275 3.02343 3.13686 3.37909 3.56380 3.63131 3.80683 3.86756 3.94085 4.04899 4.26365 4.38127 4.52660 4.60335 4.75523 4.96700 5.00799 5.17908 5.24591 5.33287 5.53224 5.74024 5.81744 5.86235 6.07827 6.24244 6.47741 6.59338 6.87561 7.02553 7.38868 8.91643 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.002558 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.816011 B =10942.275952 C =11576.821817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.137 4.137 12 C 0.089 3.911 13 H 0.129 0.871 14 N -0.830 5.830 15 C 0.516 3.484 16 O -0.495 6.495 17 N -0.651 5.651 18 C 0.354 3.646 19 N -0.471 5.471 20 C 0.111 3.889 21 C 0.031 3.969 22 F -0.123 7.123 23 C -0.061 4.061 24 C -0.103 4.103 25 Cl -0.025 7.025 26 H 0.262 0.738 27 H -0.008 1.008 28 H -0.016 1.016 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.361 0.639 34 H 0.347 0.653 35 H 0.431 0.569 36 H 0.196 0.804 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -23.318 -8.257 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.177 4.177 12 C -0.026 4.026 13 H 0.147 0.853 14 N -0.363 5.363 15 C 0.303 3.697 16 O -0.364 6.364 17 N -0.300 5.300 18 C 0.122 3.878 19 N -0.186 5.186 20 C -0.048 4.048 21 C 0.007 3.993 22 F -0.101 7.101 23 C -0.088 4.088 24 C -0.136 4.136 25 Cl 0.003 6.997 26 H 0.071 0.929 27 H 0.011 0.989 28 H 0.003 0.997 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.272 0.728 36 H 0.212 0.788 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.641 -23.891 -7.084 24.973 hybrid contribution -0.989 1.782 -0.938 2.243 sum 0.652 -22.109 -8.022 23.529 Atomic orbital electron populations 1.70110 1.07861 1.27613 1.52012 1.25991 0.95715 1.03431 0.94927 0.85428 0.79277 0.78934 0.77599 1.18268 1.20534 1.20754 1.21761 0.93704 0.92262 1.49945 0.91755 1.19016 0.94529 0.93327 0.94627 1.21433 0.97920 0.92249 1.01586 1.22270 0.98353 0.94506 1.02581 1.21375 0.95189 0.88875 0.97162 0.85301 1.58692 1.28032 1.46600 1.03000 1.21239 0.78556 0.87725 0.82223 1.90760 1.52929 1.55776 1.36967 1.43779 1.54125 1.19712 1.12404 1.18492 0.92670 0.88195 0.88460 1.67938 1.15683 1.06510 1.28425 1.23332 0.91970 0.91272 0.98259 1.18494 1.00545 0.85364 0.94860 1.91558 1.77940 1.43624 1.97012 1.21629 0.95304 0.91237 1.00632 1.21194 1.07357 0.97016 0.88055 1.98416 1.94526 1.69741 1.36970 0.92907 0.98943 0.99715 0.92347 0.91477 0.91005 0.93082 0.82300 0.83951 0.72817 0.78767 0.79309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.30 13.29 21.45 0.28 -56.02 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -29.45 9.11 25.60 0.23 -29.22 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.11 4.97 29.85 0.15 1.25 16 10 C -0.09 -3.36 4.92 30.59 0.15 -3.21 16 11 C -0.14 -4.06 4.84 30.59 0.15 -3.91 16 12 C 0.09 2.19 3.21 44.17 0.14 2.34 16 13 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 14 N -0.83 -20.92 8.94 -171.80 -1.54 -22.45 16 15 C 0.52 14.10 7.04 87.66 0.62 14.72 16 16 O -0.49 -16.90 14.50 -3.03 -0.04 -16.94 16 17 N -0.65 -14.57 5.36 -308.30 -1.65 -16.22 16 18 C 0.35 8.09 7.43 132.88 0.99 9.07 16 19 N -0.47 -12.05 7.87 -192.71 -1.52 -13.56 16 20 C 0.11 2.09 11.16 84.70 0.95 3.03 16 21 C 0.03 0.48 7.34 22.46 0.16 0.64 16 22 F -0.12 -1.86 17.28 44.97 0.78 -1.08 16 23 C -0.06 -0.84 9.96 22.51 0.22 -0.62 16 24 C -0.10 -1.78 6.36 22.53 0.14 -1.63 16 25 Cl -0.03 -0.37 27.62 -2.72 -0.08 -0.45 16 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.06 1.98 6.87 -2.39 -0.02 1.96 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.36 8.25 7.55 -89.70 -0.68 7.57 16 34 H 0.35 9.35 8.58 -89.69 -0.77 8.58 16 35 H 0.43 7.47 7.36 -92.71 -0.68 6.79 16 36 H 0.20 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -70.47 338.88 1.65 -68.82 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.98 Total: 19.82 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 4.37 Total: -7.25 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.42 Total: -108.25 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.04 Total: -16.94 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -70.47 1.65 -68.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.240 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds