Wall clock time and date at job start Tue Mar 31 2020 11:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86794 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47527 * 274.97442 * 3 2 1 5 5 H 1.48507 * 109.47412 * 34.97509 * 3 2 1 6 6 H 1.48504 * 109.47189 * 154.97691 * 3 2 1 7 7 C 1.38989 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.04394 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31613 * 7 2 1 10 10 C 1.36501 * 126.07082 * 185.48951 * 9 7 2 11 11 C 1.35688 * 107.51199 * 180.02562 * 10 9 7 12 12 N 1.40554 * 126.08674 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00373 * 180.02562 * 12 11 10 14 14 O 1.21641 * 119.99790 * 359.97438 * 13 12 11 15 15 C 1.47412 * 120.00327 * 180.02562 * 13 12 11 16 16 C 1.36572 * 127.10994 * 0.02562 * 15 13 12 17 17 O 1.33656 * 108.65342 * 179.97438 * 16 15 13 18 18 C 1.34567 * 110.87079 * 0.02562 * 17 16 15 19 19 C 1.47937 * 125.57741 * 179.97438 * 18 17 16 20 20 N 1.34197 * 126.69790 * 180.02562 * 19 18 17 21 21 N 1.28984 * 107.25299 * 179.97438 * 20 19 18 22 22 N 1.28723 * 108.98807 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.31483 * 180.02562 * 22 21 20 24 24 N 1.28872 * 109.36415 * 359.72812 * 22 21 20 25 25 C 1.35559 * 108.84148 * 359.74819 * 18 17 16 26 26 C 1.40665 * 107.83020 * 359.97438 * 11 10 9 27 27 N 1.30908 * 108.38586 * 359.72110 * 26 11 10 28 28 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.24342 * 359.96156 * 10 9 7 30 30 H 0.97004 * 119.99424 * 359.97438 * 12 11 10 31 31 H 1.07998 * 125.67506 * 359.94210 * 16 15 13 32 32 H 1.07993 * 127.07363 * 180.23192 * 25 18 17 33 33 H 1.07994 * 125.80436 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1072 -1.3947 5 1 1.5008 2.6201 0.8026 6 1 3.5931 1.4121 0.5922 7 6 2.0079 -1.2037 0.0005 8 1 3.0836 -1.2061 -0.0965 9 7 1.3264 -2.3899 0.1188 10 6 1.8854 -3.6294 0.2390 11 6 0.8721 -4.5272 0.3293 12 7 1.0092 -5.9195 0.4649 13 6 -0.0866 -6.7001 0.5435 14 8 -1.1944 -6.1997 0.4975 15 6 0.0572 -8.1602 0.6862 16 6 1.2215 -8.8708 0.7541 17 8 0.9241 -10.1675 0.8821 18 6 -0.4084 -10.3541 0.9021 19 6 -1.0930 -11.6592 1.0309 20 7 -2.4179 -11.8711 1.0529 21 7 -2.6001 -13.1419 1.1773 22 7 -1.4543 -13.7258 1.2326 23 1 -1.3158 -14.6814 1.3254 24 7 -0.5199 -12.8432 1.1393 25 6 -1.0208 -9.1499 0.7901 26 6 -0.3401 -3.8167 0.2631 27 7 -0.0657 -2.5422 0.1440 28 1 -0.4850 0.8400 -0.0004 29 1 2.9415 -3.8545 0.2576 30 1 1.8926 -6.3185 0.5011 31 1 2.2170 -8.4543 0.7109 32 1 -2.0835 -8.9586 0.7776 33 1 -1.3289 -4.2487 0.3075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592681267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:48 Heat of formation + Delta-G solvation = 202.059565 kcal Electronic energy + Delta-G solvation = -23727.332013 eV Core-core repulsion = 19795.864702 eV Total energy + Delta-G solvation = -3931.467312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.88404 -42.77796 -39.84723 -38.40884 -34.92551 -34.26483 -33.90111 -33.32550 -32.82049 -30.37470 -30.00867 -27.74729 -25.22680 -24.99390 -24.56530 -23.40918 -21.52790 -20.96995 -20.10896 -19.63913 -19.26203 -18.19323 -17.64290 -17.38480 -16.38843 -16.10018 -15.60200 -15.35560 -15.18399 -14.47369 -14.42214 -14.09258 -13.36531 -13.24217 -13.13824 -12.91371 -12.76991 -12.64873 -11.87164 -11.68916 -11.56668 -11.55848 -11.43692 -11.27052 -10.96403 -10.53019 -10.24534 -9.89436 -9.35902 -9.17430 -8.85514 -8.81002 -8.06121 -6.71552 -6.56492 -4.23033 0.45726 0.88353 1.42814 1.68205 2.19390 2.36574 2.94855 3.05073 3.10772 3.28152 3.36125 3.62184 3.78978 3.87977 3.98756 4.45446 4.48398 4.50333 4.78663 4.94550 4.98707 5.01155 5.36040 5.41042 5.59210 5.92457 6.00679 6.23255 6.45761 6.60154 6.88893 6.95149 7.10052 7.22864 7.69596 7.85614 8.14849 8.26220 8.62031 8.82018 9.37392 9.66505 10.39717 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.058458 B = 0.002116 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.862766 B =13230.663201 C =13695.333412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.082 4.082 11 C -0.061 4.061 12 N -0.617 5.617 13 C 0.568 3.432 14 O -0.526 6.526 15 C -0.215 4.215 16 C 0.040 3.960 17 O -0.158 6.158 18 C 0.039 3.961 19 C 0.258 3.742 20 N -0.249 5.249 21 N -0.041 5.041 22 N -0.224 5.224 23 H 0.478 0.522 24 N -0.283 5.283 25 C -0.077 4.077 26 C -0.030 4.030 27 N -0.261 5.261 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.394 0.606 31 H 0.222 0.778 32 H 0.175 0.825 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -23.090 2.248 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.233 4.233 11 C -0.166 4.166 12 N -0.259 5.259 13 C 0.354 3.646 14 O -0.403 6.403 15 C -0.220 4.220 16 C -0.032 4.032 17 O -0.053 6.053 18 C -0.013 4.013 19 C -0.021 4.021 20 N -0.124 5.124 21 N -0.037 5.037 22 N -0.071 5.071 23 H 0.333 0.667 24 N -0.135 5.135 25 C -0.100 4.100 26 C -0.206 4.206 27 N -0.092 5.092 28 H 0.086 0.914 29 H 0.164 0.836 30 H 0.227 0.773 31 H 0.238 0.762 32 H 0.192 0.808 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.001 -22.025 2.163 22.221 hybrid contribution 1.799 -0.636 0.111 1.911 sum 3.800 -22.661 2.274 23.089 Atomic orbital electron populations 1.70219 1.06159 1.28029 1.35054 1.25649 0.95691 1.00297 0.95483 0.85823 0.79501 0.80064 0.78828 1.19675 1.20041 1.18750 1.19868 0.92122 0.80678 1.52899 0.86589 1.44558 1.04033 1.03685 1.38669 1.21243 0.96778 0.85765 1.19560 1.17216 0.94414 0.81265 1.23721 1.42282 1.07662 1.05305 1.70610 1.16947 0.84740 0.83859 0.79031 1.90711 1.25297 1.74007 1.50294 1.21589 0.92882 0.95087 1.12469 1.24681 1.00043 0.79318 0.99156 1.83754 1.22986 1.27564 1.70948 1.17509 0.80764 0.89085 1.13928 1.21846 0.87780 0.89804 1.02685 1.76222 1.13531 1.05242 1.17358 1.78987 1.09357 1.00929 1.14412 1.47712 1.01240 1.12687 1.45440 0.66731 1.75152 1.18603 0.98431 1.21355 1.22848 1.00922 0.88135 0.98142 1.24150 0.98058 0.90846 1.07501 1.78266 0.90239 1.15073 1.25611 0.91429 0.83641 0.77288 0.76151 0.80763 0.80601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.39 11.83 55.50 0.66 -20.73 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 18.76 29.55 -169.99 -5.02 13.74 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 7 C -0.32 -8.46 10.24 -14.82 -0.15 -8.61 16 8 H 0.12 2.69 7.84 -52.49 -0.41 2.28 16 9 N -0.14 -3.85 3.74 -11.41 -0.04 -3.89 16 10 C -0.08 -1.89 11.49 -16.39 -0.19 -2.08 16 11 C -0.06 -1.37 6.90 -83.85 -0.58 -1.95 16 12 N -0.62 -10.46 5.46 -10.97 -0.06 -10.52 16 13 C 0.57 9.91 7.78 -12.53 -0.10 9.82 16 14 O -0.53 -11.41 14.13 5.24 0.07 -11.33 16 15 C -0.22 -2.83 6.30 -103.35 -0.65 -3.48 16 16 C 0.04 0.38 11.60 30.13 0.35 0.72 16 17 O -0.16 -1.69 10.54 6.68 0.07 -1.62 16 18 C 0.04 0.45 7.22 -36.57 -0.26 0.19 16 19 C 0.26 2.93 8.20 -156.26 -1.28 1.65 16 20 N -0.25 -2.90 12.52 32.08 0.40 -2.50 16 21 N -0.04 -0.38 13.47 60.35 0.81 0.43 16 22 N -0.22 -1.42 7.90 60.35 0.48 -0.94 16 23 H 0.48 0.53 8.96 -340.33 -3.05 -2.52 16 24 N -0.28 -2.66 12.41 32.10 0.40 -2.26 16 25 C -0.08 -0.99 10.92 -37.12 -0.41 -1.40 16 26 C -0.03 -0.78 10.85 -17.03 -0.18 -0.97 16 27 N -0.26 -7.55 10.41 30.80 0.32 -7.23 16 28 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 30 H 0.39 4.75 7.79 -40.82 -0.32 4.43 16 31 H 0.22 1.07 7.46 -52.49 -0.39 0.67 16 32 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.18 4.59 5.91 -52.49 -0.31 4.28 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -36.78 312.66 -5.21 -41.99 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.46 Total: 5.17 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.55 Total: -5.01 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 2.96 Total: -47.65 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.14 Total: -12.95 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.78 -5.21 -41.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592681267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.051 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds