Wall clock time and date at job start Tue Mar 31 2020 11:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86794 * 119.99762 * 2 1 4 4 H 1.48498 * 109.47527 * 274.97442 * 3 2 1 5 5 H 1.48507 * 109.47412 * 34.97509 * 3 2 1 6 6 H 1.48504 * 109.47189 * 154.97691 * 3 2 1 7 7 C 1.38989 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.04394 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31613 * 7 2 1 10 10 C 1.36501 * 126.07082 * 185.48951 * 9 7 2 11 11 C 1.35688 * 107.51199 * 180.02562 * 10 9 7 12 12 N 1.40554 * 126.08674 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00373 * 180.02562 * 12 11 10 14 14 O 1.21641 * 119.99790 * 359.97438 * 13 12 11 15 15 C 1.47412 * 120.00327 * 180.02562 * 13 12 11 16 16 C 1.36572 * 127.10994 * 0.02562 * 15 13 12 17 17 O 1.33656 * 108.65342 * 179.97438 * 16 15 13 18 18 C 1.34567 * 110.87079 * 0.02562 * 17 16 15 19 19 C 1.47937 * 125.57741 * 179.97438 * 18 17 16 20 20 N 1.34197 * 126.69790 * 180.02562 * 19 18 17 21 21 N 1.28984 * 107.25299 * 179.97438 * 20 19 18 22 22 N 1.28723 * 108.98807 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.31483 * 180.02562 * 22 21 20 24 24 N 1.28872 * 109.36415 * 359.72812 * 22 21 20 25 25 C 1.35559 * 108.84148 * 359.74819 * 18 17 16 26 26 C 1.40665 * 107.83020 * 359.97438 * 11 10 9 27 27 N 1.30908 * 108.38586 * 359.72110 * 26 11 10 28 28 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.24342 * 359.96156 * 10 9 7 30 30 H 0.97004 * 119.99424 * 359.97438 * 12 11 10 31 31 H 1.07998 * 125.67506 * 359.94210 * 16 15 13 32 32 H 1.07993 * 127.07363 * 180.23192 * 25 18 17 33 33 H 1.07994 * 125.80436 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1072 -1.3947 5 1 1.5008 2.6201 0.8026 6 1 3.5931 1.4121 0.5922 7 6 2.0079 -1.2037 0.0005 8 1 3.0836 -1.2061 -0.0965 9 7 1.3264 -2.3899 0.1188 10 6 1.8854 -3.6294 0.2390 11 6 0.8721 -4.5272 0.3293 12 7 1.0092 -5.9195 0.4649 13 6 -0.0866 -6.7001 0.5435 14 8 -1.1944 -6.1997 0.4975 15 6 0.0572 -8.1602 0.6862 16 6 1.2215 -8.8708 0.7541 17 8 0.9241 -10.1675 0.8821 18 6 -0.4084 -10.3541 0.9021 19 6 -1.0930 -11.6592 1.0309 20 7 -2.4179 -11.8711 1.0529 21 7 -2.6001 -13.1419 1.1773 22 7 -1.4543 -13.7258 1.2326 23 1 -1.3158 -14.6814 1.3254 24 7 -0.5199 -12.8432 1.1393 25 6 -1.0208 -9.1499 0.7901 26 6 -0.3401 -3.8167 0.2631 27 7 -0.0657 -2.5422 0.1440 28 1 -0.4850 0.8400 -0.0004 29 1 2.9415 -3.8545 0.2576 30 1 1.8926 -6.3185 0.5011 31 1 2.2170 -8.4543 0.7109 32 1 -2.0835 -8.9586 0.7776 33 1 -1.3289 -4.2487 0.3075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592681267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:48 Heat of formation + Delta-G solvation = 172.667226 kcal Electronic energy + Delta-G solvation = -23728.606561 eV Core-core repulsion = 19795.864702 eV Total energy + Delta-G solvation = -3932.741859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.61635 -43.68903 -41.63104 -39.99766 -35.93621 -35.66481 -35.02691 -34.67004 -33.91548 -32.21161 -31.09071 -29.46804 -26.93081 -25.83561 -25.41509 -24.68831 -22.81828 -22.42655 -21.51221 -20.97681 -20.34841 -19.27885 -19.03832 -18.38293 -17.42402 -17.26629 -17.13649 -16.87013 -16.44450 -15.95940 -15.69896 -15.25846 -14.99116 -14.89803 -14.63183 -14.17229 -13.66869 -13.48046 -13.45428 -13.24025 -12.90626 -12.81232 -12.61696 -12.33163 -12.32211 -12.05957 -11.85246 -11.00446 -10.94308 -10.91499 -10.74908 -10.06694 -9.72090 -8.49522 -8.44309 -6.20819 -0.30976 0.10462 0.40183 1.02343 1.31924 1.42373 1.47309 1.51967 1.60403 1.77833 2.02540 2.14612 2.25248 2.66573 2.69511 2.95804 3.12030 3.22929 3.51537 3.69837 4.03428 4.16913 4.35466 4.44763 4.52353 4.64449 4.80442 5.01605 5.05235 5.14449 5.32959 5.46813 5.51322 5.71815 5.99655 6.34765 6.75756 6.77728 6.95160 7.39149 7.51178 7.71908 8.55378 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.058458 B = 0.002116 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.862766 B =13230.663201 C =13695.333412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.018 2.982 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.170 5.170 10 C -0.073 4.073 11 C -0.044 4.044 12 N -0.605 5.605 13 C 0.572 3.428 14 O -0.577 6.577 15 C -0.251 4.251 16 C 0.093 3.907 17 O -0.152 6.152 18 C 0.041 3.959 19 C 0.242 3.758 20 N -0.279 5.279 21 N -0.045 5.045 22 N -0.190 5.190 23 H 0.499 0.501 24 N -0.280 5.280 25 C -0.092 4.092 26 C -0.060 4.060 27 N -0.313 5.313 28 H 0.275 0.725 29 H 0.195 0.805 30 H 0.422 0.578 31 H 0.276 0.724 32 H 0.163 0.837 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -25.114 2.510 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.164 1.164 7 C -0.484 4.484 8 H 0.161 0.839 9 N 0.061 4.939 10 C -0.224 4.224 11 C -0.150 4.150 12 N -0.250 5.250 13 C 0.361 3.639 14 O -0.458 6.458 15 C -0.256 4.256 16 C 0.021 3.979 17 O -0.045 6.045 18 C -0.010 4.010 19 C -0.037 4.037 20 N -0.152 5.152 21 N -0.040 5.040 22 N -0.043 5.043 23 H 0.359 0.641 24 N -0.133 5.133 25 C -0.116 4.116 26 C -0.235 4.235 27 N -0.145 5.145 28 H 0.085 0.915 29 H 0.211 0.789 30 H 0.260 0.740 31 H 0.291 0.709 32 H 0.180 0.820 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.723 -24.144 2.432 24.932 hybrid contribution 0.663 -0.335 0.048 0.745 sum 6.386 -24.480 2.479 25.420 Atomic orbital electron populations 1.70409 1.08496 1.29030 1.37464 1.26893 0.96430 1.04427 0.94224 0.84592 0.78555 0.74211 0.78925 1.19063 1.20457 1.16449 1.20620 0.93436 0.80954 1.53352 0.83926 1.44854 1.03535 1.05306 1.40156 1.22040 0.98909 0.84313 1.17120 1.17260 0.92781 0.83784 1.21186 1.42101 1.09274 1.02975 1.70609 1.17520 0.83869 0.85480 0.77019 1.90694 1.27407 1.75369 1.52286 1.21102 0.94823 0.92564 1.17089 1.25561 1.00634 0.78127 0.93600 1.83812 1.22300 1.27992 1.70383 1.17427 0.81019 0.88929 1.13656 1.21838 0.87814 0.90217 1.03852 1.76218 1.14135 1.06335 1.18561 1.78935 1.09997 1.00385 1.14639 1.47783 1.00131 1.13491 1.42851 0.64099 1.75103 1.18979 0.98170 1.21082 1.22796 1.00773 0.88923 0.99093 1.24187 0.99156 0.91142 1.09064 1.78162 0.92362 1.16575 1.27377 0.91492 0.78857 0.73992 0.70906 0.81957 0.81794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.92 11.83 21.66 0.26 -47.67 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 3 Si 1.02 38.34 29.55 68.60 2.03 40.37 16 4 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.24 -8.14 7.11 99.48 0.71 -7.44 16 7 C -0.35 -18.38 10.24 84.01 0.86 -17.52 16 8 H 0.14 6.35 7.84 -2.91 -0.02 6.33 16 9 N -0.17 -9.27 3.74 -190.01 -0.71 -9.98 16 10 C -0.07 -3.24 11.49 83.38 0.96 -2.28 16 11 C -0.04 -1.96 6.90 37.74 0.26 -1.70 16 12 N -0.60 -19.29 5.46 -306.85 -1.67 -20.96 16 13 C 0.57 19.72 7.78 86.66 0.67 20.40 16 14 O -0.58 -26.14 14.13 -4.16 -0.06 -26.20 16 15 C -0.25 -6.20 6.30 -19.04 -0.12 -6.32 16 16 C 0.09 1.35 11.60 67.43 0.78 2.14 16 17 O -0.15 -2.70 10.54 1.00 0.01 -2.69 16 18 C 0.04 0.90 7.22 24.22 0.17 1.08 16 19 C 0.24 5.20 8.20 137.12 1.12 6.32 16 20 N -0.28 -6.36 12.52 -52.40 -0.66 -7.02 16 21 N -0.04 -0.76 13.47 37.02 0.50 -0.26 16 22 N -0.19 -2.00 7.90 37.02 0.29 -1.71 16 23 H 0.50 -0.23 8.96 -347.51 -3.12 -3.34 16 24 N -0.28 -4.65 12.41 -52.35 -0.65 -5.30 16 25 C -0.09 -2.36 10.92 23.86 0.26 -2.10 16 26 C -0.06 -3.29 10.85 85.42 0.93 -2.36 16 27 N -0.31 -18.92 10.41 -56.46 -0.59 -19.50 16 28 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.19 6.40 8.06 -2.91 -0.02 6.38 16 30 H 0.42 8.36 7.79 -92.71 -0.72 7.64 16 31 H 0.28 0.77 7.46 -2.91 -0.02 0.74 16 32 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.17 9.19 5.91 -2.91 -0.02 9.18 16 Total: -1.00 -86.70 312.66 2.52 -84.18 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -2.59 Total: 19.05 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 6.37 Total: -2.31 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -3.23 Total: -112.40 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -86.70 2.52 -84.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592681267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.842 kcal (2) G-P(sol) polarization free energy of solvation -86.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds