Wall clock time and date at job start Tue Mar 31 2020 10:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46788 * 2 1 4 4 C 1.50697 * 109.47524 * 239.99687 * 2 1 3 5 5 C 1.38241 * 120.00651 * 306.49561 * 4 2 1 6 6 C 1.38216 * 120.04659 * 179.76671 * 5 4 2 7 7 C 1.38262 * 120.06220 * 0.50304 * 6 5 4 8 8 C 1.38269 * 120.01309 * 359.74761 * 7 6 5 9 9 Cl 1.73602 * 120.02755 * 179.97438 * 8 7 6 10 10 C 1.38399 * 120.00375 * 126.76343 * 4 2 1 11 11 F 1.35103 * 120.03402 * 359.95978 * 10 4 2 12 12 N 1.46499 * 109.46896 * 119.99932 * 2 1 3 13 13 C 1.36937 * 120.00223 * 61.52741 * 12 2 1 14 14 H 1.08001 * 120.00139 * 43.92201 * 13 12 2 15 15 C 1.38817 * 120.00107 * 223.91925 * 13 12 2 16 16 N 1.31612 * 120.00427 * 208.49643 * 15 13 12 17 17 Si 1.86802 * 119.99754 * 28.76977 * 15 13 12 18 18 H 1.48505 * 109.47119 * 95.81476 * 17 15 13 19 19 H 1.48501 * 109.47286 * 215.81241 * 17 15 13 20 20 H 1.48497 * 109.47249 * 335.81878 * 17 15 13 21 21 C 1.46511 * 119.99957 * 241.52544 * 12 2 1 22 22 C 1.52998 * 109.46791 * 276.85473 * 21 12 2 23 23 C 1.50702 * 109.46579 * 184.56102 * 22 21 12 24 24 O 1.20824 * 120.00127 * 359.97438 * 23 22 21 25 25 O 1.34235 * 119.99734 * 179.97438 * 23 22 21 26 26 H 1.08997 * 109.47022 * 60.00069 * 1 2 3 27 27 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47406 * 299.99769 * 1 2 3 29 29 H 1.08003 * 119.97603 * 359.97438 * 5 4 2 30 30 H 1.08006 * 119.96820 * 180.25458 * 6 5 4 31 31 H 1.08007 * 119.99404 * 179.72671 * 7 6 5 32 32 H 0.96995 * 120.00417 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.46854 * 36.84993 * 21 12 2 34 34 H 1.09003 * 109.46979 * 156.85319 * 21 12 2 35 35 H 1.08996 * 109.47052 * 304.55718 * 22 21 12 36 36 H 1.08995 * 109.47444 * 64.56115 * 22 21 12 37 37 H 0.96700 * 116.99993 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.5917 -1.9885 -1.5191 6 6 2.0482 -2.6390 -2.6500 7 6 2.9544 -2.0167 -3.4886 8 6 3.4009 -0.7405 -3.1994 9 17 4.5392 0.0409 -4.2518 10 6 2.9395 -0.0856 -2.0684 11 9 3.3744 1.1616 -1.7846 12 7 2.0183 -0.6906 1.1962 13 6 1.7135 -2.0104 1.3973 14 1 1.7851 -2.7119 0.5792 15 6 1.3124 -2.4467 2.6526 16 7 1.5502 -3.6863 3.0255 17 14 0.4285 -1.2766 3.8097 18 1 -1.0385 -1.4697 3.6834 19 1 0.8456 -1.5536 5.2077 20 1 0.7754 0.1238 3.4577 21 6 2.8328 0.0308 2.1774 22 6 4.2922 0.0430 1.7183 23 6 5.1472 0.6861 2.7797 24 8 4.6411 1.0934 3.7984 25 8 6.4711 0.8066 2.5932 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.8875 -2.4777 -0.8625 30 1 1.6999 -3.6359 -2.8766 31 1 3.3138 -2.5278 -4.3696 32 1 1.2697 -3.9913 3.9025 33 1 2.4714 1.0553 2.2666 34 1 2.7604 -0.4657 3.1450 35 1 4.6290 -0.9801 1.5511 36 1 4.3768 0.6095 0.7910 37 1 6.9778 1.2263 3.3018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593698794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:42 Heat of formation + Delta-G solvation = -97.834905 kcal Electronic energy + Delta-G solvation = -24845.225211 eV Core-core repulsion = 20949.648280 eV Total energy + Delta-G solvation = -3895.576931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.66283 -39.86454 -39.11688 -36.90119 -36.15676 -35.70768 -32.76214 -31.99083 -30.12795 -29.72014 -28.40353 -25.03645 -24.09255 -22.49868 -22.24440 -20.63390 -19.68677 -17.87257 -17.63339 -16.61324 -16.32967 -16.10749 -15.93518 -15.58703 -15.46316 -14.78258 -14.35341 -14.04092 -13.82224 -13.27805 -13.04868 -12.97163 -12.72892 -12.61677 -12.25726 -12.03642 -11.88968 -11.64078 -11.38468 -11.21662 -11.12494 -11.06597 -10.90221 -10.70632 -10.35420 -10.24106 -10.18985 -9.99924 -9.60393 -8.68066 -8.41367 -8.39351 -6.91883 -6.18945 -3.64876 1.30492 1.39093 2.16725 2.59996 3.31905 3.43208 3.46241 3.52027 3.76997 4.36104 4.45952 4.84514 4.97191 5.08667 5.26675 5.37429 5.48463 5.54500 5.62848 5.67357 5.91083 6.02936 6.05976 6.13127 6.19446 6.23531 6.34602 6.51128 6.54961 6.57910 6.73386 6.79954 6.89511 6.95221 7.06055 7.89739 8.23320 8.28049 8.80944 9.54535 9.97993 10.93587 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.006060 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.004859 B = 4619.362914 C = 6063.324441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.200 3.800 3 H 0.067 0.933 4 C -0.091 4.091 5 C -0.055 4.055 6 C -0.125 4.125 7 C -0.096 4.096 8 C -0.081 4.081 9 Cl -0.070 7.070 10 C 0.105 3.895 11 F -0.132 7.132 12 N -0.586 5.586 13 C -0.296 4.296 14 H 0.087 0.913 15 C 0.058 3.942 16 N -0.878 5.878 17 Si 0.854 3.146 18 H -0.288 1.288 19 H -0.294 1.294 20 H -0.257 1.257 21 C 0.163 3.837 22 C -0.135 4.135 23 C 0.480 3.520 24 O -0.523 6.523 25 O -0.523 6.523 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.156 0.844 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.266 0.734 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 5.489 -10.590 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.093 3.907 3 H 0.085 0.915 4 C -0.094 4.094 5 C -0.074 4.074 6 C -0.143 4.143 7 C -0.115 4.115 8 C -0.108 4.108 9 Cl -0.041 7.041 10 C 0.084 3.916 11 F -0.111 7.111 12 N -0.306 5.306 13 C -0.424 4.424 14 H 0.104 0.896 15 C -0.146 4.146 16 N -0.516 5.516 17 Si 0.681 3.319 18 H -0.215 1.215 19 H -0.221 1.221 20 H -0.181 1.181 21 C 0.037 3.963 22 C -0.175 4.175 23 C 0.323 3.677 24 O -0.411 6.411 25 O -0.335 6.335 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.173 0.827 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.060 5.381 -10.551 12.232 hybrid contribution 0.247 0.977 1.187 1.557 sum 3.308 6.358 -9.364 11.792 Atomic orbital electron populations 1.22134 0.96022 1.02814 1.00075 1.19340 0.93284 0.93742 0.84295 0.91458 1.20694 0.95927 0.96210 0.96591 1.21495 0.98427 0.92756 0.94688 1.21211 0.97802 1.00473 0.94836 1.20827 0.97817 0.92305 1.00596 1.20870 0.99601 0.95887 0.94457 1.98348 1.59621 1.80828 1.65350 1.17312 0.98120 0.81201 0.94954 1.91470 1.88203 1.38174 1.93251 1.44113 1.55585 1.09918 1.21010 1.18750 1.43807 0.82465 0.97364 0.89594 1.25590 0.96512 0.94963 0.97532 1.69958 1.43638 1.17689 1.20291 0.87195 0.80793 0.83703 0.80234 1.21502 1.22102 1.18132 1.21110 0.85756 0.96049 0.93394 1.22354 0.96807 1.02424 0.95934 1.24101 0.80402 0.75258 0.87918 1.90681 1.73969 1.46696 1.29770 1.84627 1.22184 1.75656 1.50996 0.93809 0.91216 0.92774 0.82678 0.84932 0.84908 0.92440 0.93689 0.91210 0.87200 0.88883 0.74265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.92 37.16 0.33 -2.22 16 2 C 0.20 3.60 3.04 -69.08 -0.21 3.39 16 3 H 0.07 1.17 6.91 -51.93 -0.36 0.81 16 4 C -0.09 -1.54 4.93 -104.56 -0.52 -2.05 16 5 C -0.06 -0.89 7.45 -39.59 -0.29 -1.18 16 6 C -0.12 -1.69 10.04 -39.58 -0.40 -2.09 16 7 C -0.10 -1.26 9.83 -39.56 -0.39 -1.65 16 8 C -0.08 -1.19 6.33 -39.44 -0.25 -1.44 16 9 Cl -0.07 -0.94 28.62 -51.86 -1.48 -2.43 16 10 C 0.10 1.70 7.22 -39.39 -0.28 1.42 16 11 F -0.13 -2.19 15.78 2.25 0.04 -2.16 16 12 N -0.59 -12.28 1.85 -166.97 -0.31 -12.59 16 13 C -0.30 -7.10 7.98 -15.06 -0.12 -7.22 16 14 H 0.09 2.14 5.09 -52.49 -0.27 1.87 16 15 C 0.06 1.52 5.05 -17.43 -0.09 1.43 16 16 N -0.88 -24.52 13.97 55.49 0.78 -23.75 16 17 Si 0.85 20.62 26.43 -169.99 -4.49 16.13 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.26 -6.02 5.87 56.52 0.33 -5.69 16 21 C 0.16 3.39 3.08 -4.04 -0.01 3.37 16 22 C -0.13 -2.44 6.12 -27.88 -0.17 -2.61 16 23 C 0.48 8.37 8.33 36.01 0.30 8.67 16 24 O -0.52 -10.55 16.69 -18.75 -0.31 -10.86 16 25 O -0.52 -7.33 13.42 -39.27 -0.53 -7.86 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.23 6.60 -51.93 -0.34 0.88 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.16 2.68 5.39 -52.48 -0.28 2.40 16 30 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.04 0.90 8.01 -51.93 -0.42 0.49 16 34 H 0.07 1.63 5.00 -51.93 -0.26 1.37 16 35 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.40 3.70 9.10 45.56 0.41 4.11 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -29.01 328.27 -6.72 -35.74 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.25 Total: 5.01 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.10 Total: -2.19 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.47 Total: -36.34 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.84 Total: -18.72 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.49 Total: 16.13 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.48 Total: -2.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.01 -6.72 -35.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593698794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.096 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds