Wall clock time and date at job start Tue Mar 31 2020 10:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46788 * 2 1 4 4 C 1.50697 * 109.47524 * 239.99687 * 2 1 3 5 5 C 1.38241 * 120.00651 * 306.49561 * 4 2 1 6 6 C 1.38216 * 120.04659 * 179.76671 * 5 4 2 7 7 C 1.38262 * 120.06220 * 0.50304 * 6 5 4 8 8 C 1.38269 * 120.01309 * 359.74761 * 7 6 5 9 9 Cl 1.73602 * 120.02755 * 179.97438 * 8 7 6 10 10 C 1.38399 * 120.00375 * 126.76343 * 4 2 1 11 11 F 1.35103 * 120.03402 * 359.95978 * 10 4 2 12 12 N 1.46499 * 109.46896 * 119.99932 * 2 1 3 13 13 C 1.36937 * 120.00223 * 61.52741 * 12 2 1 14 14 H 1.08001 * 120.00139 * 43.92201 * 13 12 2 15 15 C 1.38817 * 120.00107 * 223.91925 * 13 12 2 16 16 N 1.31612 * 120.00427 * 208.49643 * 15 13 12 17 17 Si 1.86802 * 119.99754 * 28.76977 * 15 13 12 18 18 H 1.48505 * 109.47119 * 95.81476 * 17 15 13 19 19 H 1.48501 * 109.47286 * 215.81241 * 17 15 13 20 20 H 1.48497 * 109.47249 * 335.81878 * 17 15 13 21 21 C 1.46511 * 119.99957 * 241.52544 * 12 2 1 22 22 C 1.52998 * 109.46791 * 276.85473 * 21 12 2 23 23 C 1.50702 * 109.46579 * 184.56102 * 22 21 12 24 24 O 1.20824 * 120.00127 * 359.97438 * 23 22 21 25 25 O 1.34235 * 119.99734 * 179.97438 * 23 22 21 26 26 H 1.08997 * 109.47022 * 60.00069 * 1 2 3 27 27 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47406 * 299.99769 * 1 2 3 29 29 H 1.08003 * 119.97603 * 359.97438 * 5 4 2 30 30 H 1.08006 * 119.96820 * 180.25458 * 6 5 4 31 31 H 1.08007 * 119.99404 * 179.72671 * 7 6 5 32 32 H 0.96995 * 120.00417 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.46854 * 36.84993 * 21 12 2 34 34 H 1.09003 * 109.46979 * 156.85319 * 21 12 2 35 35 H 1.08996 * 109.47052 * 304.55718 * 22 21 12 36 36 H 1.08995 * 109.47444 * 64.56115 * 22 21 12 37 37 H 0.96700 * 116.99993 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.5917 -1.9885 -1.5191 6 6 2.0482 -2.6390 -2.6500 7 6 2.9544 -2.0167 -3.4886 8 6 3.4009 -0.7405 -3.1994 9 17 4.5392 0.0409 -4.2518 10 6 2.9395 -0.0856 -2.0684 11 9 3.3744 1.1616 -1.7846 12 7 2.0183 -0.6906 1.1962 13 6 1.7135 -2.0104 1.3973 14 1 1.7851 -2.7119 0.5792 15 6 1.3124 -2.4467 2.6526 16 7 1.5502 -3.6863 3.0255 17 14 0.4285 -1.2766 3.8097 18 1 -1.0385 -1.4697 3.6834 19 1 0.8456 -1.5536 5.2077 20 1 0.7754 0.1238 3.4577 21 6 2.8328 0.0308 2.1774 22 6 4.2922 0.0430 1.7183 23 6 5.1472 0.6861 2.7797 24 8 4.6411 1.0934 3.7984 25 8 6.4711 0.8066 2.5932 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.8875 -2.4777 -0.8625 30 1 1.6999 -3.6359 -2.8766 31 1 3.3138 -2.5278 -4.3696 32 1 1.2697 -3.9913 3.9025 33 1 2.4714 1.0553 2.2666 34 1 2.7604 -0.4657 3.1450 35 1 4.6290 -0.9801 1.5511 36 1 4.3768 0.6095 0.7910 37 1 6.9778 1.2263 3.3018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593698794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:42 Heat of formation + Delta-G solvation = -114.075863 kcal Electronic energy + Delta-G solvation = -24845.929472 eV Core-core repulsion = 20949.648280 eV Total energy + Delta-G solvation = -3896.281191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.90297 -41.25390 -40.35998 -38.29011 -37.36661 -37.04017 -34.32743 -33.74599 -31.33468 -31.14425 -29.82576 -26.74211 -25.50195 -23.93911 -23.46037 -22.02674 -21.21939 -19.30664 -18.94763 -18.05442 -17.70397 -17.48788 -17.42912 -16.91504 -16.71293 -16.41616 -15.87813 -15.30419 -15.24280 -14.87365 -14.45858 -14.27166 -14.15973 -13.92801 -13.78875 -13.63162 -13.18868 -13.11109 -12.75440 -12.70979 -12.54434 -12.49846 -12.26205 -12.07865 -11.90239 -11.75224 -11.67426 -11.55499 -11.45720 -10.59674 -9.67371 -9.56119 -8.67994 -8.19672 -5.59032 0.12920 0.22634 1.05395 1.20581 1.36610 1.47321 1.55059 2.12714 2.48840 2.58649 3.07328 3.18468 3.45572 3.73583 4.01362 4.06238 4.12729 4.21604 4.31320 4.39149 4.50769 4.67047 4.69072 4.78731 4.94191 4.99129 5.03360 5.08243 5.12034 5.20117 5.36157 5.53863 5.59907 5.61270 5.87453 5.98125 6.36890 6.96867 7.03964 7.63833 8.12049 8.96534 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.006060 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.004859 B = 4619.362914 C = 6063.324441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.199 3.801 3 H 0.075 0.925 4 C -0.104 4.104 5 C -0.070 4.070 6 C -0.116 4.116 7 C -0.085 4.085 8 C -0.085 4.085 9 Cl -0.058 7.058 10 C 0.093 3.907 11 F -0.137 7.137 12 N -0.595 5.595 13 C -0.259 4.259 14 H 0.079 0.921 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.893 3.107 18 H -0.291 1.291 19 H -0.313 1.313 20 H -0.248 1.248 21 C 0.162 3.838 22 C -0.125 4.125 23 C 0.490 3.510 24 O -0.554 6.554 25 O -0.511 6.511 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.138 0.862 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 6.323 -12.877 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.093 3.907 3 H 0.093 0.907 4 C -0.107 4.107 5 C -0.088 4.088 6 C -0.134 4.134 7 C -0.103 4.103 8 C -0.113 4.113 9 Cl -0.029 7.029 10 C 0.072 3.928 11 F -0.116 7.116 12 N -0.316 5.316 13 C -0.388 4.388 14 H 0.096 0.904 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.721 3.279 18 H -0.218 1.218 19 H -0.241 1.241 20 H -0.172 1.172 21 C 0.036 3.964 22 C -0.165 4.165 23 C 0.334 3.666 24 O -0.445 6.445 25 O -0.324 6.324 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 4.045 6.266 -12.865 14.870 hybrid contribution 0.065 0.779 1.734 1.902 sum 4.109 7.045 -11.131 13.799 Atomic orbital electron populations 1.22085 0.95244 1.02306 1.00970 1.19451 0.93922 0.93951 0.83381 0.90719 1.20479 0.97056 0.96668 0.96520 1.21420 0.98817 0.92806 0.95773 1.21487 0.97006 1.01344 0.93580 1.21188 0.96563 0.91533 1.01063 1.21041 0.99657 0.96417 0.94164 1.98355 1.59099 1.80746 1.64744 1.17377 0.98476 0.81243 0.95657 1.91453 1.88285 1.38471 1.93385 1.44200 1.56292 1.09181 1.21902 1.18790 1.40000 0.83704 0.96320 0.90397 1.25974 0.98246 0.95413 0.98977 1.70030 1.46671 1.19177 1.20657 0.86578 0.79911 0.83172 0.78258 1.21818 1.24131 1.17152 1.20979 0.87619 0.95731 0.92120 1.22060 0.95341 1.02316 0.96787 1.23754 0.81340 0.74546 0.86938 1.90683 1.74840 1.48160 1.30810 1.84544 1.20513 1.75389 1.51993 0.91131 0.92397 0.93632 0.84456 0.82242 0.81752 0.93004 0.93100 0.94154 0.88145 0.87229 0.71432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 8.92 71.98 0.64 -4.17 16 2 C 0.20 6.93 3.04 44.24 0.13 7.07 16 3 H 0.07 2.49 6.91 -2.39 -0.02 2.47 16 4 C -0.10 -3.36 4.93 -19.83 -0.10 -3.46 16 5 C -0.07 -2.14 7.45 22.26 0.17 -1.98 16 6 C -0.12 -2.81 10.04 22.27 0.22 -2.59 16 7 C -0.08 -1.92 9.83 22.28 0.22 -1.70 16 8 C -0.09 -2.27 6.33 22.36 0.14 -2.12 16 9 Cl -0.06 -1.40 28.62 -2.72 -0.08 -1.48 16 10 C 0.09 2.83 7.22 22.39 0.16 2.99 16 11 F -0.14 -4.27 15.78 44.97 0.71 -3.56 16 12 N -0.59 -24.70 1.85 -682.18 -1.27 -25.96 16 13 C -0.26 -12.51 7.98 84.03 0.67 -11.84 16 14 H 0.08 3.91 5.09 -2.91 -0.01 3.89 16 15 C 0.01 0.70 5.05 84.86 0.43 1.13 16 16 N -0.92 -53.15 13.97 21.65 0.30 -52.84 16 17 Si 0.89 43.58 26.43 68.60 1.81 45.39 16 18 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 19 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 20 H -0.25 -11.53 5.87 99.48 0.58 -10.95 16 21 C 0.16 6.65 3.08 86.38 0.27 6.91 16 22 C -0.12 -4.39 6.12 29.85 0.18 -4.21 16 23 C 0.49 16.38 8.33 71.24 0.59 16.97 16 24 O -0.55 -21.91 16.69 21.97 0.37 -21.54 16 25 O -0.51 -13.01 13.42 -51.46 -0.69 -13.70 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 2.01 6.60 -2.38 -0.02 2.00 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.14 4.72 5.39 -2.91 -0.02 4.70 16 30 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.05 2.01 8.01 -2.39 -0.02 1.99 16 34 H 0.04 1.90 5.00 -2.39 -0.01 1.89 16 35 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.42 6.61 9.10 -74.06 -0.67 5.94 16 Total: -1.00 -62.80 328.27 5.22 -57.58 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.33 Total: 13.11 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 3.73 Total: 3.01 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -0.96 Total: -78.81 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.32 Total: -35.24 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.71 Total: -3.56 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.81 Total: 45.39 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -62.80 5.22 -57.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593698794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.499 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds