Wall clock time and date at job start Tue Mar 31 2020 10:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46485 * 2 1 4 4 C 1.50699 * 109.47257 * 120.00335 * 2 1 3 5 5 C 1.38238 * 120.00431 * 16.87388 * 4 2 1 6 6 C 1.38226 * 120.04567 * 179.74019 * 5 4 2 7 7 C 1.38261 * 120.05789 * 0.51225 * 6 5 4 8 8 C 1.38278 * 120.01751 * 359.76145 * 7 6 5 9 9 Cl 1.73594 * 120.02751 * 179.97438 * 8 7 6 10 10 C 1.38396 * 120.00406 * 197.14588 * 4 2 1 11 11 F 1.35104 * 120.03336 * 0.02682 * 10 4 2 12 12 N 1.46502 * 109.46708 * 240.00642 * 2 1 3 13 13 C 1.36937 * 119.99735 * 295.95196 * 12 2 1 14 14 H 1.07996 * 120.00181 * 39.98538 * 13 12 2 15 15 C 1.38816 * 119.99652 * 219.98300 * 13 12 2 16 16 N 1.31619 * 119.99832 * 212.49084 * 15 13 12 17 17 Si 1.86807 * 120.00017 * 32.49296 * 15 13 12 18 18 H 1.48497 * 109.47136 * 93.30554 * 17 15 13 19 19 H 1.48501 * 109.47014 * 213.30758 * 17 15 13 20 20 H 1.48497 * 109.46931 * 333.30779 * 17 15 13 21 21 C 1.46502 * 120.00015 * 115.95854 * 12 2 1 22 22 C 1.53002 * 109.46774 * 275.62403 * 21 12 2 23 23 C 1.50706 * 109.47090 * 175.75271 * 22 21 12 24 24 O 1.20820 * 119.99773 * 0.02562 * 23 22 21 25 25 O 1.34225 * 119.99682 * 180.02562 * 23 22 21 26 26 H 1.09005 * 109.47153 * 299.99487 * 1 2 3 27 27 H 1.08994 * 109.47994 * 59.99532 * 1 2 3 28 28 H 1.08997 * 109.47362 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.97773 * 359.97438 * 5 4 2 30 30 H 1.07994 * 119.96911 * 180.27557 * 6 5 4 31 31 H 1.08006 * 119.99097 * 179.74719 * 7 6 5 32 32 H 0.97001 * 119.99744 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.47310 * 155.62938 * 21 12 2 34 34 H 1.09003 * 109.47356 * 35.62123 * 21 12 2 35 35 H 1.08998 * 109.47309 * 295.75732 * 22 21 12 36 36 H 1.09006 * 109.46896 * 55.75718 * 22 21 12 37 37 H 0.96705 * 116.99485 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.1827 -1.5282 1.9518 6 6 1.6441 -2.1846 3.0774 7 6 2.9530 -2.0159 3.4897 8 6 3.8035 -1.1940 2.7732 9 17 5.4467 -0.9815 3.2910 10 6 3.3428 -0.5399 1.6415 11 9 4.1722 0.2639 0.9406 12 7 2.0182 -0.6905 -1.1963 13 6 1.7571 -2.0232 -1.3721 14 1 0.7900 -2.4236 -1.1063 15 6 2.7355 -2.8595 -1.8920 16 7 2.3934 -3.8875 -2.6393 17 14 4.5377 -2.5258 -1.5309 18 1 4.9561 -3.3049 -0.3379 19 1 5.3598 -2.9303 -2.6996 20 1 4.7299 -1.0769 -1.2682 21 6 2.7860 0.0447 -2.2044 22 6 1.8246 0.7478 -3.1649 23 6 2.6114 1.5877 -4.1379 24 8 3.8172 1.6202 -4.0703 25 8 1.9724 2.2995 -5.0794 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5138 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 0.1588 -1.6574 1.6335 30 1 0.9805 -2.8266 3.6375 31 1 3.3112 -2.5260 4.3717 32 1 3.0771 -4.4721 -3.0022 33 1 3.4128 -0.6508 -2.7623 34 1 3.4151 0.7866 -1.7124 35 1 1.2477 0.0022 -3.7120 36 1 1.1474 1.3868 -2.5980 37 1 2.5197 2.8227 -5.6811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593698795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:44 Heat of formation + Delta-G solvation = -115.679614 kcal Electronic energy + Delta-G solvation = -24981.142413 eV Core-core repulsion = 21084.791678 eV Total energy + Delta-G solvation = -3896.350735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.90296 -41.22198 -40.33197 -38.31946 -37.45182 -37.02439 -34.42319 -33.70443 -31.38427 -31.13968 -29.75230 -26.72793 -25.51084 -23.94054 -23.41420 -21.95700 -21.30217 -19.21937 -18.83704 -18.27717 -17.61359 -17.51284 -17.37782 -16.90876 -16.82529 -16.44249 -15.94826 -15.42866 -15.21272 -14.88525 -14.49276 -14.28167 -14.25057 -13.97816 -13.83649 -13.42901 -13.29830 -12.97297 -12.79826 -12.60838 -12.51876 -12.47839 -12.30853 -12.27494 -11.91853 -11.82226 -11.65310 -11.63179 -11.38550 -10.58509 -9.75060 -9.59168 -8.75137 -8.28846 -5.54393 0.09064 0.21103 0.98875 1.24793 1.25361 1.36262 1.50325 2.15108 2.41682 2.56380 3.02481 3.23200 3.50343 3.72827 3.96455 4.08734 4.18369 4.22186 4.31974 4.37116 4.55111 4.64135 4.72862 4.84241 4.96684 5.00855 5.07030 5.12871 5.21131 5.22674 5.28858 5.51171 5.63758 5.66082 5.86744 5.92774 6.28540 6.96070 7.05853 7.62907 8.09309 8.89936 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.005488 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.404129 B = 5100.529834 C = 5128.127889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.195 3.805 3 H 0.072 0.928 4 C -0.102 4.102 5 C -0.075 4.075 6 C -0.110 4.110 7 C -0.095 4.095 8 C -0.097 4.097 9 Cl -0.070 7.070 10 C 0.082 3.918 11 F -0.146 7.146 12 N -0.592 5.592 13 C -0.233 4.233 14 H 0.073 0.927 15 C 0.020 3.980 16 N -0.915 5.915 17 Si 0.862 3.138 18 H -0.303 1.303 19 H -0.312 1.312 20 H -0.251 1.251 21 C 0.164 3.836 22 C -0.122 4.122 23 C 0.488 3.512 24 O -0.560 6.560 25 O -0.509 6.509 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.163 0.837 32 H 0.259 0.741 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 9.174 9.119 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.090 3.910 3 H 0.090 0.910 4 C -0.105 4.105 5 C -0.093 4.093 6 C -0.128 4.128 7 C -0.114 4.114 8 C -0.124 4.124 9 Cl -0.042 7.042 10 C 0.061 3.939 11 F -0.124 7.124 12 N -0.313 5.313 13 C -0.363 4.363 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.557 5.557 17 Si 0.691 3.309 18 H -0.231 1.231 19 H -0.240 1.240 20 H -0.175 1.175 21 C 0.038 3.962 22 C -0.162 4.162 23 C 0.332 3.668 24 O -0.451 6.451 25 O -0.322 6.322 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.177 0.823 30 H 0.191 0.809 31 H 0.181 0.819 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -5.366 8.894 9.304 13.945 hybrid contribution 2.629 0.100 -0.722 2.728 sum -2.738 8.993 8.582 12.729 Atomic orbital electron populations 1.22131 0.93574 1.02411 1.02326 1.19691 0.95512 0.93884 0.81934 0.90954 1.20730 0.91235 1.00488 0.98034 1.21491 1.01133 0.93235 0.93479 1.21591 0.95007 0.99357 0.96873 1.21246 0.93317 0.96569 1.00222 1.21248 0.87846 1.04975 0.98343 1.98337 1.19184 1.96616 1.90026 1.17710 0.89370 0.95012 0.91791 1.91456 1.71591 1.71162 1.78231 1.44299 1.64061 1.06188 1.16779 1.18468 0.96004 0.83187 1.38609 0.90976 1.25746 0.98157 0.95668 0.98318 1.70054 1.33955 1.19682 1.31995 0.87085 0.87678 0.79585 0.76533 1.23132 1.23969 1.17479 1.20826 0.91734 0.93805 0.89830 1.22036 1.00021 0.98500 0.95633 1.23875 0.86519 0.76682 0.79693 1.90698 1.17977 1.63942 1.72526 1.84533 1.45667 1.58469 1.43554 0.90457 0.91799 0.92366 0.82274 0.80877 0.81933 0.93111 0.95236 0.94013 0.87441 0.85543 0.71499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.09 71.98 0.58 -3.24 16 2 C 0.19 6.57 2.69 44.24 0.12 6.69 16 3 H 0.07 2.34 7.73 -2.39 -0.02 2.33 16 4 C -0.10 -3.49 4.67 -19.83 -0.09 -3.58 16 5 C -0.07 -2.09 9.11 22.27 0.20 -1.88 16 6 C -0.11 -2.60 10.04 22.27 0.22 -2.38 16 7 C -0.09 -2.50 9.83 22.28 0.22 -2.28 16 8 C -0.10 -3.24 6.33 22.36 0.14 -3.10 16 9 Cl -0.07 -2.26 28.62 -2.72 -0.08 -2.34 16 10 C 0.08 3.08 7.22 22.39 0.16 3.24 16 11 F -0.15 -6.15 16.18 44.97 0.73 -5.42 16 12 N -0.59 -24.70 1.93 -682.20 -1.32 -26.02 16 13 C -0.23 -11.51 8.73 84.03 0.73 -10.78 16 14 H 0.07 3.72 7.19 -2.91 -0.02 3.70 16 15 C 0.02 1.12 5.00 84.86 0.42 1.54 16 16 N -0.91 -53.98 13.97 21.65 0.30 -53.68 16 17 Si 0.86 46.54 26.42 68.60 1.81 48.35 16 18 H -0.30 -16.84 7.11 99.48 0.71 -16.13 16 19 H -0.31 -17.47 7.11 99.48 0.71 -16.76 16 20 H -0.25 -13.40 5.82 99.48 0.58 -12.82 16 21 C 0.16 6.90 3.18 86.38 0.27 7.18 16 22 C -0.12 -4.02 6.13 29.85 0.18 -3.84 16 23 C 0.49 15.68 8.33 71.24 0.59 16.28 16 24 O -0.56 -22.27 16.69 21.98 0.37 -21.90 16 25 O -0.51 -11.99 13.42 -51.37 -0.69 -12.68 16 26 H 0.08 1.56 8.13 -2.38 -0.02 1.55 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.64 5.81 -2.39 -0.01 1.63 16 29 H 0.16 3.75 5.96 -2.91 -0.02 3.73 16 30 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 32 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.03 1.45 4.89 -2.39 -0.01 1.43 16 34 H 0.04 1.79 7.84 -2.39 -0.02 1.77 16 35 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.13 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.42 6.05 9.10 -74.05 -0.67 5.37 16 Total: -1.00 -70.57 332.13 5.21 -65.36 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 0.32 Total: 4.47 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 3.77 Total: 3.85 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.01 Total: -79.70 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.32 Total: -34.58 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.73 Total: -5.42 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.81 Total: 48.35 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -70.57 5.21 -65.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593698795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.321 kcal (2) G-P(sol) polarization free energy of solvation -70.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds