Wall clock time and date at job start Tue Mar 31 2020 10:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47547 * 2 1 4 4 H 1.08999 * 109.47087 * 180.34011 * 3 2 1 5 5 C 1.50700 * 109.46903 * 60.34301 * 3 2 1 6 6 H 1.08005 * 119.99832 * 239.99806 * 5 3 2 7 7 C 1.37878 * 120.00280 * 60.00305 * 5 3 2 8 8 N 1.31507 * 119.99793 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99827 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47200 * 60.00382 * 9 7 5 11 11 H 1.48506 * 109.46789 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47552 * 299.99559 * 9 7 5 13 13 N 1.46905 * 109.47070 * 300.34098 * 3 2 1 14 14 C 1.46892 * 111.00039 * 274.67092 * 13 3 2 15 15 H 1.09010 * 109.47222 * 13.18140 * 14 13 3 16 16 C 1.50701 * 109.47154 * 253.17956 * 14 13 3 17 17 O 1.20821 * 119.99698 * 0.02562 * 16 14 13 18 18 O 1.34233 * 119.99982 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47320 * 133.17733 * 14 13 3 20 20 C 1.38461 * 120.02209 * 226.03194 * 19 14 13 21 21 F 1.35096 * 120.02008 * 0.02562 * 20 19 14 22 22 C 1.38447 * 119.95934 * 179.97438 * 20 19 14 23 23 C 1.38226 * 120.00515 * 0.02562 * 22 20 19 24 24 C 1.38206 * 120.03461 * 359.97438 * 23 22 20 25 25 C 1.38297 * 120.01643 * 45.75664 * 19 14 13 26 26 Cl 1.73600 * 120.00000 * 0.02562 * 25 19 14 27 27 H 1.09004 * 109.47058 * 62.56632 * 1 2 3 28 28 H 1.08992 * 109.47552 * 182.57552 * 1 2 3 29 29 H 1.09004 * 109.46972 * 302.57493 * 1 2 3 30 30 H 1.09006 * 109.46810 * 239.99707 * 2 1 3 31 31 H 1.08999 * 109.46859 * 120.00171 * 2 1 3 32 32 H 0.97002 * 120.00164 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99393 * 150.71591 * 13 3 2 34 34 H 0.96692 * 117.00276 * 179.97438 * 18 16 14 35 35 H 1.07999 * 119.99425 * 180.02562 * 22 20 19 36 36 H 1.07994 * 119.98188 * 179.97438 * 23 22 20 37 37 H 1.08004 * 119.97537 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4423 -0.0061 5 6 1.5447 2.1504 1.2347 6 1 0.9233 3.0287 1.1409 7 6 1.8849 1.6768 2.4842 8 7 2.6412 0.6071 2.5984 9 14 1.2714 2.5548 4.0145 10 1 -0.2136 2.5554 4.0231 11 1 1.7726 1.8519 5.2228 12 1 1.7670 3.9546 4.0144 13 7 1.5437 2.1373 -1.1953 14 6 2.4251 1.9001 -2.3462 15 1 3.1098 1.0833 -2.1173 16 6 3.2144 3.1497 -2.6405 17 8 3.0590 4.1364 -1.9609 18 8 4.0902 3.1664 -3.6577 19 6 1.5936 1.5362 -3.5492 20 6 1.9586 0.4633 -4.3448 21 9 3.0601 -0.2582 -4.0428 22 6 1.1935 0.1298 -5.4494 23 6 0.0662 0.8680 -5.7578 24 6 -0.2981 1.9388 -4.9636 25 6 0.4623 2.2701 -3.8559 26 17 0.0001 3.6114 -2.8554 27 1 -0.3633 0.4735 -0.9121 28 1 -0.3634 -1.0265 0.0462 29 1 -0.3633 0.5533 0.8660 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8802 0.2737 3.4774 33 1 1.4354 3.1251 -1.0204 34 1 4.5728 3.9907 -3.8079 35 1 1.4774 -0.7071 -6.0701 36 1 -0.5301 0.6077 -6.6197 37 1 -1.1788 2.5151 -5.2057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:12 Heat of formation + Delta-G solvation = -110.191223 kcal Electronic energy + Delta-G solvation = -25199.900528 eV Core-core repulsion = 21303.787788 eV Total energy + Delta-G solvation = -3896.112741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.86952 -40.34676 -38.95718 -36.60856 -36.15920 -35.64175 -33.42661 -31.39021 -30.41119 -30.01528 -27.15171 -25.25891 -23.34346 -22.90805 -22.56610 -20.72828 -19.04109 -17.98350 -17.78561 -17.22189 -16.53042 -16.32507 -15.70809 -15.36551 -15.13570 -14.75491 -14.62199 -13.88778 -13.63238 -13.60512 -13.35234 -12.97988 -12.87600 -12.47794 -11.99488 -11.86173 -11.68586 -11.43201 -11.31149 -11.14076 -10.91247 -10.81072 -10.55681 -10.47336 -10.32132 -10.19723 -9.74321 -9.38120 -8.90244 -8.69729 -8.65519 -8.49393 -7.57005 -6.01628 -4.06549 0.99950 1.03491 2.26797 2.44417 3.18806 3.33511 3.37246 3.40514 3.49155 4.23730 4.40973 4.55546 4.73311 4.81393 5.13697 5.21374 5.31467 5.39738 5.52170 5.64516 5.83132 5.99153 6.10118 6.13427 6.49803 6.63933 6.66706 6.68915 6.83148 7.15660 7.21858 7.43486 7.71367 7.72888 7.81768 8.08755 8.18365 8.27658 8.55381 8.98750 9.57482 11.04546 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.005245 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.376805 B = 5336.798075 C = 5468.791047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.212 3.788 4 H 0.003 0.997 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.648 5.648 14 C 0.132 3.868 15 H 0.118 0.882 16 C 0.461 3.539 17 O -0.495 6.495 18 O -0.517 6.517 19 C -0.089 4.089 20 C 0.128 3.872 21 F -0.128 7.128 22 C -0.156 4.156 23 C -0.082 4.082 24 C -0.129 4.129 25 C 0.016 3.984 26 Cl -0.032 7.032 27 H 0.042 0.958 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.009 0.991 31 H 0.090 0.910 32 H 0.262 0.738 33 H 0.357 0.643 34 H 0.402 0.598 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 0.804 -17.615 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.021 0.979 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.286 5.286 14 C 0.019 3.981 15 H 0.136 0.864 16 C 0.300 3.700 17 O -0.380 6.380 18 O -0.327 6.327 19 C -0.092 4.092 20 C 0.108 3.892 21 F -0.107 7.107 22 C -0.175 4.175 23 C -0.100 4.100 24 C -0.148 4.148 25 C -0.011 4.011 26 Cl -0.003 7.003 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.183 0.817 34 H 0.260 0.740 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.275 0.231 -17.223 17.533 hybrid contribution 0.976 1.397 1.202 2.085 sum -2.300 1.628 -16.021 16.267 Atomic orbital electron populations 1.21436 0.97317 0.97404 1.01489 1.21471 0.95243 0.97838 0.99635 1.19347 0.93068 0.91618 0.85444 0.97910 1.21042 1.31839 1.11914 0.89982 0.92204 1.24845 0.94985 0.94982 0.98871 1.69862 1.36509 1.22636 1.23763 0.86608 0.79239 0.79698 0.82183 1.20159 1.21349 1.20339 1.61379 1.43761 1.18745 1.04730 1.20211 0.92227 0.93429 0.92274 0.86442 1.24513 0.77537 0.91179 0.76756 1.90704 1.64042 1.35365 1.47920 1.84605 1.53026 1.44443 1.50668 1.19492 0.96922 0.96065 0.96678 1.17286 0.85340 0.91243 0.95314 1.91521 1.50437 1.76005 1.92691 1.21135 0.96573 1.02415 0.97403 1.20888 0.95778 0.94077 0.99248 1.21082 1.00511 0.98870 0.94334 1.20543 0.94892 0.92427 0.93240 1.98409 1.91207 1.42550 1.68132 0.93912 0.96731 0.92449 0.97203 0.89199 0.92857 0.81726 0.74002 0.84246 0.84329 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.52 37.16 0.35 -2.30 16 2 C -0.10 -2.48 5.57 -26.73 -0.15 -2.63 16 3 C 0.21 5.26 2.09 -68.86 -0.14 5.12 16 4 H 0.00 0.09 7.66 -51.93 -0.40 -0.31 16 5 C -0.51 -13.78 7.30 -34.44 -0.25 -14.03 16 6 H 0.06 1.63 7.61 -52.48 -0.40 1.23 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 8 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.65 -13.76 3.85 -103.40 -0.40 -14.16 16 14 C 0.13 2.45 2.36 -70.02 -0.17 2.29 16 15 H 0.12 2.29 6.35 -51.92 -0.33 1.96 16 16 C 0.46 8.18 6.99 36.01 0.25 8.44 16 17 O -0.49 -9.99 16.02 -18.75 -0.30 -10.29 16 18 O -0.52 -7.26 13.34 -39.27 -0.52 -7.78 16 19 C -0.09 -1.42 4.88 -104.52 -0.51 -1.93 16 20 C 0.13 1.85 7.25 -39.42 -0.29 1.57 16 21 F -0.13 -1.98 16.26 2.25 0.04 -1.94 16 22 C -0.16 -1.73 10.03 -39.51 -0.40 -2.13 16 23 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 24 C -0.13 -1.47 9.83 -39.54 -0.39 -1.86 16 25 C 0.02 0.24 6.16 -39.51 -0.24 0.00 16 26 Cl -0.03 -0.52 24.64 -51.86 -1.28 -1.80 16 27 H 0.04 0.91 7.68 -51.93 -0.40 0.51 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 1.38 7.14 -51.93 -0.37 1.01 16 30 H 0.01 0.21 7.91 -51.93 -0.41 -0.20 16 31 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.36 7.95 4.88 -39.29 -0.19 7.76 16 34 H 0.40 3.75 9.10 45.56 0.41 4.16 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -30.46 328.60 -7.55 -38.01 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.22 Total: 7.99 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.42 Total: -6.97 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.23 Total: -38.60 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.82 Total: -18.07 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.28 Total: -1.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.46 -7.55 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.182 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds