Wall clock time and date at job start Tue Mar 31 2020 10:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47547 * 2 1 4 4 H 1.08999 * 109.47087 * 180.34011 * 3 2 1 5 5 C 1.50700 * 109.46903 * 60.34301 * 3 2 1 6 6 H 1.08005 * 119.99832 * 239.99806 * 5 3 2 7 7 C 1.37878 * 120.00280 * 60.00305 * 5 3 2 8 8 N 1.31507 * 119.99793 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99827 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47200 * 60.00382 * 9 7 5 11 11 H 1.48506 * 109.46789 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47552 * 299.99559 * 9 7 5 13 13 N 1.46905 * 109.47070 * 300.34098 * 3 2 1 14 14 C 1.46892 * 111.00039 * 274.67092 * 13 3 2 15 15 H 1.09010 * 109.47222 * 13.18140 * 14 13 3 16 16 C 1.50701 * 109.47154 * 253.17956 * 14 13 3 17 17 O 1.20821 * 119.99698 * 0.02562 * 16 14 13 18 18 O 1.34233 * 119.99982 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47320 * 133.17733 * 14 13 3 20 20 C 1.38461 * 120.02209 * 226.03194 * 19 14 13 21 21 F 1.35096 * 120.02008 * 0.02562 * 20 19 14 22 22 C 1.38447 * 119.95934 * 179.97438 * 20 19 14 23 23 C 1.38226 * 120.00515 * 0.02562 * 22 20 19 24 24 C 1.38206 * 120.03461 * 359.97438 * 23 22 20 25 25 C 1.38297 * 120.01643 * 45.75664 * 19 14 13 26 26 Cl 1.73600 * 120.00000 * 0.02562 * 25 19 14 27 27 H 1.09004 * 109.47058 * 62.56632 * 1 2 3 28 28 H 1.08992 * 109.47552 * 182.57552 * 1 2 3 29 29 H 1.09004 * 109.46972 * 302.57493 * 1 2 3 30 30 H 1.09006 * 109.46810 * 239.99707 * 2 1 3 31 31 H 1.08999 * 109.46859 * 120.00171 * 2 1 3 32 32 H 0.97002 * 120.00164 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99393 * 150.71591 * 13 3 2 34 34 H 0.96692 * 117.00276 * 179.97438 * 18 16 14 35 35 H 1.07999 * 119.99425 * 180.02562 * 22 20 19 36 36 H 1.07994 * 119.98188 * 179.97438 * 23 22 20 37 37 H 1.08004 * 119.97537 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4423 -0.0061 5 6 1.5447 2.1504 1.2347 6 1 0.9233 3.0287 1.1409 7 6 1.8849 1.6768 2.4842 8 7 2.6412 0.6071 2.5984 9 14 1.2714 2.5548 4.0145 10 1 -0.2136 2.5554 4.0231 11 1 1.7726 1.8519 5.2228 12 1 1.7670 3.9546 4.0144 13 7 1.5437 2.1373 -1.1953 14 6 2.4251 1.9001 -2.3462 15 1 3.1098 1.0833 -2.1173 16 6 3.2144 3.1497 -2.6405 17 8 3.0590 4.1364 -1.9609 18 8 4.0902 3.1664 -3.6577 19 6 1.5936 1.5362 -3.5492 20 6 1.9586 0.4633 -4.3448 21 9 3.0601 -0.2582 -4.0428 22 6 1.1935 0.1298 -5.4494 23 6 0.0662 0.8680 -5.7578 24 6 -0.2981 1.9388 -4.9636 25 6 0.4623 2.2701 -3.8559 26 17 0.0001 3.6114 -2.8554 27 1 -0.3633 0.4735 -0.9121 28 1 -0.3634 -1.0265 0.0462 29 1 -0.3633 0.5533 0.8660 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8802 0.2737 3.4774 33 1 1.4354 3.1251 -1.0204 34 1 4.5728 3.9907 -3.8079 35 1 1.4774 -0.7071 -6.0701 36 1 -0.5301 0.6077 -6.6197 37 1 -1.1788 2.5151 -5.2057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:12 Heat of formation + Delta-G solvation = -128.976764 kcal Electronic energy + Delta-G solvation = -25200.715131 eV Core-core repulsion = 21303.787788 eV Total energy + Delta-G solvation = -3896.927343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.97535 -41.72377 -40.02113 -38.19605 -37.30318 -37.11605 -35.08453 -33.21516 -31.52291 -31.36179 -28.78096 -27.03057 -25.20207 -24.02356 -23.64050 -22.12975 -20.85627 -19.38609 -18.99513 -18.67115 -17.81599 -17.69842 -17.08271 -16.75672 -16.53346 -16.28254 -15.68306 -15.46138 -15.30895 -15.11576 -14.55203 -14.34748 -14.08913 -14.06382 -13.80403 -13.35423 -12.87272 -12.81765 -12.77023 -12.68611 -12.43104 -12.39758 -12.21281 -12.14978 -11.94238 -11.79278 -11.54418 -11.24484 -10.86196 -10.57283 -9.82165 -9.64790 -9.34342 -8.11903 -6.23566 0.00950 0.06429 0.99882 1.21677 1.40886 1.41931 1.49373 1.93717 2.40101 2.50078 3.16606 3.24152 3.30677 3.53198 3.84165 3.93541 4.21492 4.27148 4.33239 4.47900 4.58693 4.76824 4.87972 4.92240 5.06289 5.15676 5.25188 5.26146 5.33539 5.41943 5.51353 5.67487 5.75853 5.77866 5.84688 6.23409 6.31616 6.60305 6.84485 6.92444 7.43818 8.93224 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.005245 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.376805 B = 5336.798075 C = 5468.791047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C 0.220 3.780 4 H -0.036 1.036 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.639 5.639 14 C 0.130 3.870 15 H 0.100 0.900 16 C 0.468 3.532 17 O -0.525 6.525 18 O -0.504 6.504 19 C -0.113 4.113 20 C 0.106 3.894 21 F -0.142 7.142 22 C -0.144 4.144 23 C -0.060 4.060 24 C -0.122 4.122 25 C -0.002 4.002 26 Cl -0.055 7.055 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.262 0.738 33 H 0.350 0.650 34 H 0.425 0.575 35 H 0.171 0.829 36 H 0.188 0.812 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 0.362 -20.072 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C 0.112 3.888 4 H -0.019 1.019 5 C -0.561 4.561 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.276 5.276 14 C 0.016 3.984 15 H 0.118 0.882 16 C 0.308 3.692 17 O -0.414 6.414 18 O -0.316 6.316 19 C -0.116 4.116 20 C 0.086 3.914 21 F -0.120 7.120 22 C -0.162 4.162 23 C -0.078 4.078 24 C -0.140 4.140 25 C -0.030 4.030 26 Cl -0.026 7.026 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.174 0.826 34 H 0.287 0.713 35 H 0.189 0.811 36 H 0.205 0.795 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.825 -0.210 -19.721 20.303 hybrid contribution 1.516 1.508 1.779 2.781 sum -3.309 1.298 -17.942 18.291 Atomic orbital electron populations 1.21274 0.95686 0.98398 1.00848 1.21300 0.96510 0.96940 0.98598 1.19108 0.90625 0.92498 0.86576 1.01892 1.21275 1.31730 1.11843 0.91237 0.92991 1.25557 0.95138 0.95621 1.01518 1.69990 1.37312 1.23678 1.24281 0.85690 0.78972 0.78502 0.78959 1.19436 1.20764 1.20295 1.61313 1.44391 1.17844 1.04022 1.20113 0.92461 0.93144 0.92633 0.88236 1.24274 0.77568 0.90451 0.76876 1.90690 1.65149 1.36370 1.49193 1.84529 1.52185 1.45995 1.48939 1.19319 0.97788 0.97967 0.96478 1.17623 0.85894 0.91218 0.96674 1.91485 1.51284 1.76247 1.93001 1.21567 0.95899 1.02887 0.95896 1.21453 0.94884 0.92018 0.99469 1.21480 1.00481 0.99248 0.92840 1.20745 0.95464 0.92289 0.94454 1.98399 1.91308 1.43788 1.69105 0.93042 0.94687 0.94569 0.96319 0.91988 0.92862 0.82573 0.71348 0.81131 0.79529 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.67 9.52 71.98 0.69 -3.98 16 2 C -0.09 -4.67 5.57 30.59 0.17 -4.50 16 3 C 0.22 11.40 2.09 44.17 0.09 11.49 16 4 H -0.04 -2.13 7.66 -2.39 -0.02 -2.14 16 5 C -0.52 -29.22 7.30 25.60 0.19 -29.04 16 6 H 0.05 2.93 7.61 -2.91 -0.02 2.91 16 7 C 0.02 1.19 5.30 84.66 0.45 1.64 16 8 N -0.91 -52.96 11.32 21.45 0.24 -52.71 16 9 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.64 -28.09 3.85 -481.04 -1.85 -29.94 16 14 C 0.13 4.97 2.36 43.42 0.10 5.07 16 15 H 0.10 4.12 6.35 -2.38 -0.02 4.10 16 16 C 0.47 17.03 6.99 71.24 0.50 17.53 16 17 O -0.53 -21.94 16.02 21.98 0.35 -21.58 16 18 O -0.50 -13.99 13.34 -51.45 -0.69 -14.68 16 19 C -0.11 -3.56 4.88 -19.80 -0.10 -3.66 16 20 C 0.11 2.90 7.25 22.37 0.16 3.06 16 21 F -0.14 -4.32 16.26 44.97 0.73 -3.59 16 22 C -0.14 -2.61 10.03 22.32 0.22 -2.39 16 23 C -0.06 -0.85 10.04 22.26 0.22 -0.63 16 24 C -0.12 -2.34 9.83 22.30 0.22 -2.12 16 25 C 0.00 -0.07 6.16 22.32 0.14 0.07 16 26 Cl -0.06 -1.76 24.64 -2.72 -0.07 -1.83 16 27 H 0.05 2.17 7.68 -2.39 -0.02 2.15 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.74 7.14 -2.39 -0.02 1.72 16 30 H 0.02 0.85 7.91 -2.38 -0.02 0.83 16 31 H 0.06 3.41 6.06 -2.39 -0.01 3.40 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.35 16.23 4.88 -89.70 -0.44 15.79 16 34 H 0.43 7.51 9.10 -74.06 -0.67 6.84 16 35 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -68.99 328.60 3.82 -65.16 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.02 Total: 19.96 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 3.05 Total: -7.45 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.61 Total: -82.66 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.33 Total: -36.26 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.73 Total: -3.59 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.83 kcal Total: -68.99 3.82 -65.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.812 kcal (2) G-P(sol) polarization free energy of solvation -68.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds