Wall clock time and date at job start Tue Mar 31 2020 10:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46948 * 2 1 4 4 H 1.09003 * 109.46820 * 303.46290 * 3 2 1 5 5 C 1.50694 * 109.46974 * 183.46393 * 3 2 1 6 6 H 1.08008 * 119.99932 * 239.99556 * 5 3 2 7 7 C 1.37875 * 120.00403 * 60.00174 * 5 3 2 8 8 N 1.31521 * 119.99801 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47496 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47259 * 119.99821 * 9 7 5 12 12 H 1.48499 * 109.47251 * 239.99400 * 9 7 5 13 13 N 1.46895 * 109.47023 * 63.46349 * 3 2 1 14 14 C 1.46897 * 110.99792 * 204.35469 * 13 3 2 15 15 H 1.09002 * 109.47392 * 324.29549 * 14 13 3 16 16 C 1.50707 * 109.47581 * 84.29799 * 14 13 3 17 17 O 1.20820 * 119.99560 * 26.69568 * 16 14 13 18 18 O 1.34224 * 120.00000 * 206.70306 * 16 14 13 19 19 C 1.50702 * 109.46991 * 204.29655 * 14 13 3 20 20 C 1.38458 * 120.02170 * 314.72464 * 19 14 13 21 21 F 1.35095 * 120.01481 * 359.97346 * 20 19 14 22 22 C 1.38443 * 119.96379 * 179.74657 * 20 19 14 23 23 C 1.38228 * 119.99768 * 0.52822 * 22 20 19 24 24 C 1.38201 * 120.04292 * 359.72648 * 23 22 20 25 25 C 1.38294 * 120.01683 * 135.00156 * 19 14 13 26 26 Cl 1.73597 * 120.00434 * 359.97438 * 25 19 14 27 27 H 1.08998 * 109.46891 * 174.69520 * 1 2 3 28 28 H 1.09007 * 109.47170 * 294.68931 * 1 2 3 29 29 H 1.08999 * 109.47750 * 54.69422 * 1 2 3 30 30 H 1.08996 * 109.47181 * 240.00204 * 2 1 3 31 31 H 1.09002 * 109.47507 * 119.99640 * 2 1 3 32 32 H 0.97001 * 119.99317 * 180.02562 * 8 7 5 33 33 H 1.00895 * 111.00484 * 80.40188 * 13 3 2 34 34 H 0.96703 * 117.00193 * 180.02562 * 18 16 14 35 35 H 1.08000 * 120.00211 * 180.25579 * 22 20 19 36 36 H 1.08003 * 119.97862 * 179.75373 * 23 22 20 37 37 H 1.08002 * 119.98355 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6267 1.9740 -0.8574 5 6 3.5444 1.4435 -0.0858 6 1 4.1300 1.8951 0.7014 7 6 4.1735 0.8678 -1.1693 8 7 3.4605 0.3175 -2.1277 9 14 6.0384 0.8696 -1.2760 10 1 6.6021 1.5463 -0.0804 11 1 6.5324 -0.5297 -1.3322 12 1 6.4635 1.5940 -2.5006 13 7 1.6198 2.1104 1.2390 14 6 1.5602 3.5670 1.0578 15 1 2.3614 3.8831 0.3898 16 6 0.2294 3.9449 0.4600 17 8 -0.7364 3.2424 0.6431 18 8 0.1171 5.0618 -0.2759 19 6 1.7220 4.2464 2.3932 20 6 1.0208 3.7854 3.4945 21 9 0.1906 2.7267 3.3723 22 6 1.1744 4.4072 4.7219 23 6 2.0192 5.4943 4.8450 24 6 2.7152 5.9578 3.7446 25 6 2.5668 5.3342 2.5181 26 17 3.4416 5.9171 1.1366 27 1 -0.3633 -1.0233 -0.0950 28 1 -0.3634 0.4293 0.9338 29 1 -0.3634 0.5939 -0.8386 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9032 -0.0878 -2.8897 33 1 2.2283 1.8661 2.0059 34 1 -0.7566 5.2629 -0.6382 35 1 0.6308 4.0455 5.5822 36 1 2.1357 5.9816 5.8018 37 1 3.3753 6.8070 3.8420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:14 Heat of formation + Delta-G solvation = -113.623711 kcal Electronic energy + Delta-G solvation = -25182.957903 eV Core-core repulsion = 21286.696318 eV Total energy + Delta-G solvation = -3896.261585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.58799 -40.05317 -38.95776 -36.41843 -36.39700 -35.39418 -33.40917 -31.62526 -30.52615 -30.01082 -27.14664 -25.45291 -23.09744 -22.75724 -22.52035 -20.30389 -19.51938 -17.95350 -17.50700 -16.79248 -16.61204 -16.04683 -15.84969 -15.18101 -14.97636 -14.75506 -14.62983 -14.07835 -13.63983 -13.33977 -13.20262 -13.05307 -12.69360 -12.49561 -12.18889 -11.87022 -11.40428 -11.33655 -11.26724 -11.14689 -11.02615 -10.94350 -10.71924 -10.62327 -10.31660 -9.99940 -9.61708 -9.53444 -9.12918 -8.84536 -8.70011 -8.42112 -7.46021 -6.04167 -4.17881 0.86916 0.98013 2.05950 2.74280 3.24124 3.25315 3.33021 3.35935 3.52038 4.27063 4.36396 4.54621 4.71365 4.74809 5.07152 5.21138 5.31666 5.35794 5.77090 5.82523 5.84115 5.92262 6.05821 6.12237 6.48208 6.62144 6.65380 6.81964 6.93532 7.06463 7.31954 7.37051 7.55679 7.75204 7.91821 8.04390 8.18676 8.45771 8.49117 8.91807 9.50330 10.96557 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.006283 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.116484 B = 4455.078671 C = 5362.008027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.550 4.550 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.657 5.657 14 C 0.142 3.858 15 H 0.103 0.897 16 C 0.482 3.518 17 O -0.482 6.482 18 O -0.520 6.520 19 C -0.122 4.122 20 C 0.144 3.856 21 F -0.102 7.102 22 C -0.163 4.163 23 C -0.076 4.076 24 C -0.131 4.131 25 C 0.008 3.992 26 Cl -0.041 7.041 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.343 0.657 34 H 0.401 0.599 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 12.013 11.152 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.589 4.589 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.290 5.290 14 C 0.030 3.970 15 H 0.121 0.879 16 C 0.321 3.679 17 O -0.366 6.366 18 O -0.331 6.331 19 C -0.125 4.125 20 C 0.124 3.876 21 F -0.080 7.080 22 C -0.182 4.182 23 C -0.094 4.094 24 C -0.150 4.150 25 C -0.019 4.019 26 Cl -0.012 7.012 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.258 0.742 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.552 11.511 10.919 16.259 hybrid contribution 1.388 0.134 -0.637 1.533 sum -2.164 11.646 10.283 15.686 Atomic orbital electron populations 1.21661 0.98437 0.97921 1.01096 1.21457 0.92485 0.98399 1.01761 1.19280 0.92819 0.91577 0.85370 0.95141 1.21846 0.92201 1.38400 1.06440 0.92534 1.24908 0.98081 0.94769 0.95477 1.69899 1.34963 1.37427 1.09634 0.86603 0.85958 0.77818 0.78050 1.19748 1.20896 1.20980 1.60657 1.57266 1.00719 1.10363 1.19722 0.92791 0.92709 0.91758 0.87933 1.23431 0.91493 0.77496 0.75511 1.90664 1.39478 1.50251 1.56172 1.84576 1.40440 1.43809 1.64315 1.19622 0.99710 0.97612 0.95524 1.17397 0.90701 0.86442 0.93067 1.91673 1.67788 1.52209 1.96363 1.21276 1.02128 0.98127 0.96633 1.20942 0.94688 0.95161 0.98604 1.21047 1.01837 1.01416 0.90716 1.20646 0.96004 0.95346 0.89941 1.98411 1.74075 1.87114 1.41573 0.95934 0.92729 0.94718 0.89084 0.94905 0.92813 0.83780 0.74154 0.84084 0.84181 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.72 37.15 0.36 -2.64 16 2 C -0.10 -2.52 5.44 -26.73 -0.15 -2.66 16 3 C 0.22 5.37 1.80 -68.87 -0.12 5.25 16 4 H 0.03 0.85 7.61 -51.93 -0.40 0.45 16 5 C -0.55 -14.47 8.23 -34.44 -0.28 -14.76 16 6 H 0.06 1.47 7.75 -52.48 -0.41 1.06 16 7 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 8 N -0.88 -24.71 11.30 55.43 0.63 -24.08 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.66 -14.04 3.88 -103.39 -0.40 -14.44 16 14 C 0.14 2.75 2.20 -70.01 -0.15 2.60 16 15 H 0.10 2.14 5.84 -51.93 -0.30 1.84 16 16 C 0.48 9.28 7.03 36.01 0.25 9.54 16 17 O -0.48 -10.32 17.11 -18.75 -0.32 -10.64 16 18 O -0.52 -8.22 13.42 -39.24 -0.53 -8.75 16 19 C -0.12 -1.99 4.66 -104.52 -0.49 -2.48 16 20 C 0.14 2.19 6.82 -39.42 -0.27 1.92 16 21 F -0.10 -1.81 15.44 2.25 0.03 -1.78 16 22 C -0.16 -1.84 10.03 -39.51 -0.40 -2.24 16 23 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 24 C -0.13 -1.42 9.83 -39.54 -0.39 -1.81 16 25 C 0.01 0.12 6.31 -39.50 -0.25 -0.13 16 26 Cl -0.04 -0.61 27.08 -51.86 -1.40 -2.01 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 1.23 7.86 -51.93 -0.41 0.82 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 2.46 5.98 -51.93 -0.31 2.15 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.34 7.19 7.82 -39.29 -0.31 6.88 16 34 H 0.40 4.39 9.10 45.56 0.41 4.81 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -30.79 335.39 -7.72 -38.52 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.39 Total: 8.99 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.38 Total: -6.71 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.22 Total: -38.53 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.85 Total: -19.39 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.78 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.40 Total: -2.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.79 -7.72 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.107 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds