Wall clock time and date at job start Tue Mar 31 2020 10:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47535 * 2 1 4 4 H 1.08997 * 109.47672 * 181.47169 * 3 2 1 5 5 C 1.50697 * 109.46957 * 301.47756 * 3 2 1 6 6 H 1.08003 * 120.00194 * 120.00071 * 5 3 2 7 7 C 1.37875 * 119.99815 * 299.99130 * 5 3 2 8 8 N 1.31514 * 120.00093 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00169 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47308 * 89.99253 * 9 7 5 11 11 H 1.48496 * 109.47285 * 209.99708 * 9 7 5 12 12 H 1.48504 * 109.46970 * 329.99443 * 9 7 5 13 13 N 1.46906 * 109.46811 * 61.47226 * 3 2 1 14 14 C 1.46900 * 111.00005 * 86.28621 * 13 3 2 15 15 H 1.09005 * 109.46823 * 327.68286 * 14 13 3 16 16 C 1.50702 * 109.47267 * 87.67978 * 14 13 3 17 17 O 1.20823 * 120.00243 * 359.97438 * 16 14 13 18 18 O 1.34228 * 119.99628 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47345 * 207.68378 * 14 13 3 20 20 C 1.38464 * 120.01405 * 314.72291 * 19 14 13 21 21 F 1.35104 * 120.02180 * 359.97438 * 20 19 14 22 22 C 1.38444 * 119.95685 * 179.74174 * 20 19 14 23 23 C 1.38226 * 120.00623 * 0.53074 * 22 20 19 24 24 C 1.38205 * 120.03485 * 359.72317 * 23 22 20 25 25 C 1.38290 * 120.02474 * 134.99468 * 19 14 13 26 26 Cl 1.73600 * 119.99664 * 359.97438 * 25 19 14 27 27 H 1.08994 * 109.47184 * 305.56364 * 1 2 3 28 28 H 1.09003 * 109.47094 * 65.56062 * 1 2 3 29 29 H 1.09000 * 109.47314 * 185.56154 * 1 2 3 30 30 H 1.08998 * 109.47704 * 239.99789 * 2 1 3 31 31 H 1.09000 * 109.46972 * 119.99955 * 2 1 3 32 32 H 0.97004 * 120.00129 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99964 * 210.23252 * 13 3 2 34 34 H 0.96698 * 117.00013 * 180.02562 * 18 16 14 35 35 H 1.08000 * 119.99612 * 180.25518 * 22 20 19 36 36 H 1.07995 * 119.98393 * 179.69531 * 23 22 20 37 37 H 1.07995 * 119.98377 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4426 -0.0264 5 6 1.5081 2.1633 -1.2117 6 1 0.8899 3.0405 -1.0901 7 6 1.8107 1.7031 -2.4757 8 7 1.3469 2.3325 -3.5332 9 14 2.8795 0.1856 -2.6861 10 1 2.0196 -1.0245 -2.7212 11 1 3.6410 0.2888 -3.9568 12 1 3.8277 0.0862 -1.5475 13 7 1.5796 2.1246 1.2169 14 6 2.5070 1.8939 2.3326 15 1 2.9543 0.9047 2.2346 16 6 3.5915 2.9401 2.3090 17 8 3.5921 3.7903 1.4505 18 8 4.5572 2.9266 3.2410 19 6 1.7556 1.9786 3.6362 20 6 0.8579 3.0104 3.8524 21 9 0.6555 3.9420 2.8951 22 6 0.1642 3.0840 5.0482 23 6 0.3761 2.1342 6.0299 24 6 1.2760 1.1073 5.8161 25 6 1.9663 1.0291 4.6193 26 17 3.0964 -0.2613 4.3517 27 1 -0.3633 0.5977 0.8359 28 1 -0.3633 0.4252 -0.9356 29 1 -0.3634 -1.0228 0.0996 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5595 2.0085 -4.4225 33 1 1.4514 3.1116 1.0516 34 1 5.2309 3.6181 3.1851 35 1 -0.5392 3.8862 5.2159 36 1 -0.1615 2.1948 6.9645 37 1 1.4412 0.3659 6.5838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:17 Heat of formation + Delta-G solvation = -104.358687 kcal Electronic energy + Delta-G solvation = -25229.028115 eV Core-core repulsion = 21333.168292 eV Total energy + Delta-G solvation = -3895.859823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.85186 -40.39262 -39.10813 -36.81806 -36.57286 -35.69485 -33.56263 -31.73108 -30.63131 -30.26456 -27.39299 -25.55535 -23.31682 -22.87557 -22.84803 -20.90830 -19.37778 -18.09681 -17.71382 -17.23726 -16.58793 -16.47523 -15.90039 -15.55261 -15.22003 -15.01035 -14.79791 -14.12004 -13.75060 -13.55729 -13.52113 -13.14627 -13.08361 -12.79241 -12.43215 -12.07548 -12.01698 -11.49545 -11.45213 -11.33855 -11.18366 -10.84652 -10.70841 -10.60330 -10.50823 -10.24661 -10.04499 -9.35239 -9.04588 -8.92040 -8.78912 -8.57519 -7.91365 -6.07186 -4.05565 0.83138 0.92129 1.91825 2.39166 3.11530 3.27243 3.36028 3.38121 3.38419 4.16175 4.39097 4.39852 4.57774 4.66561 4.97558 5.03049 5.24524 5.26640 5.38768 5.51847 5.72462 5.86136 5.93414 6.00741 6.06560 6.17894 6.41576 6.54845 6.63476 6.65741 6.82659 7.07822 7.17764 7.44490 7.52127 7.68098 8.06726 8.15482 8.55707 8.97145 9.53661 11.05786 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.005421 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.477152 B = 5164.289820 C = 5370.685881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.004 0.996 5 C -0.507 4.507 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.896 5.896 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.640 5.640 14 C 0.129 3.871 15 H 0.127 0.873 16 C 0.446 3.554 17 O -0.488 6.488 18 O -0.517 6.517 19 C -0.092 4.092 20 C 0.139 3.861 21 F -0.118 7.118 22 C -0.154 4.154 23 C -0.079 4.079 24 C -0.125 4.125 25 C 0.008 3.992 26 Cl -0.051 7.051 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.362 0.638 34 H 0.401 0.599 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -2.571 21.464 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 C 0.076 3.924 4 H 0.021 0.979 5 C -0.545 4.545 6 H 0.099 0.901 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.224 1.224 12 H -0.196 1.196 13 N -0.275 5.275 14 C 0.016 3.984 15 H 0.145 0.855 16 C 0.285 3.715 17 O -0.373 6.373 18 O -0.327 6.327 19 C -0.094 4.094 20 C 0.119 3.881 21 F -0.096 7.096 22 C -0.173 4.173 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.020 4.020 26 Cl -0.022 7.022 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.186 0.814 34 H 0.259 0.741 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.653 -3.187 21.110 21.359 hybrid contribution 1.872 0.190 -0.846 2.063 sum 2.524 -2.997 20.264 20.640 Atomic orbital electron populations 1.21459 0.95268 0.98217 1.03230 1.21800 0.97721 0.97754 0.98075 1.19682 0.93497 0.91463 0.87742 0.97864 1.20888 1.32401 1.13081 0.88180 0.90109 1.24834 0.95348 0.96680 0.95791 1.69877 1.45160 1.40233 0.98085 0.86927 0.81020 0.83889 0.76862 1.20210 1.22416 1.19557 1.61035 1.40943 1.19653 1.05840 1.20439 0.88177 0.98120 0.91698 0.85514 1.24897 0.82298 0.85996 0.78340 1.90793 1.74214 1.36620 1.35681 1.84611 1.38321 1.56345 1.53467 1.19364 0.99456 0.95248 0.95374 1.17315 0.96472 0.87621 0.86674 1.91562 1.93367 1.62589 1.62058 1.21240 1.01571 1.01795 0.92673 1.20921 0.96890 0.93011 0.98923 1.21024 0.97344 1.00061 0.95987 1.20476 0.95174 0.91394 0.94943 1.98384 1.59630 1.47953 1.96249 0.92293 0.91672 0.95913 0.93791 0.94873 0.92593 0.81402 0.74066 0.84015 0.84104 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.46 37.16 0.35 -2.27 16 2 C -0.12 -2.56 5.27 -26.74 -0.14 -2.70 16 3 C 0.18 4.43 1.62 -68.87 -0.11 4.32 16 4 H 0.00 0.10 6.78 -51.93 -0.35 -0.26 16 5 C -0.51 -14.27 7.94 -34.44 -0.27 -14.55 16 6 H 0.08 2.48 7.84 -52.48 -0.41 2.07 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 9 Si 0.88 22.30 24.36 -169.99 -4.14 18.16 16 10 H -0.28 -6.73 6.88 56.52 0.39 -6.34 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.62 6.53 56.52 0.37 -6.25 16 13 N -0.64 -13.41 4.49 -103.39 -0.46 -13.87 16 14 C 0.13 2.29 2.18 -70.02 -0.15 2.14 16 15 H 0.13 2.24 5.43 -51.93 -0.28 1.96 16 16 C 0.45 7.97 7.35 36.01 0.26 8.23 16 17 O -0.49 -10.45 16.44 -18.75 -0.31 -10.76 16 18 O -0.52 -7.08 13.34 -39.25 -0.52 -7.61 16 19 C -0.09 -1.37 4.88 -104.52 -0.51 -1.88 16 20 C 0.14 2.00 7.01 -39.42 -0.28 1.73 16 21 F -0.12 -1.98 14.85 2.25 0.03 -1.94 16 22 C -0.15 -1.64 10.03 -39.51 -0.40 -2.03 16 23 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 24 C -0.13 -1.21 9.83 -39.54 -0.39 -1.59 16 25 C 0.01 0.10 6.31 -39.51 -0.25 -0.15 16 26 Cl -0.05 -0.64 27.08 -51.86 -1.40 -2.04 16 27 H 0.06 1.20 7.48 -51.93 -0.39 0.82 16 28 H 0.06 1.53 7.38 -51.93 -0.38 1.14 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 1.03 3.30 -51.93 -0.17 0.86 16 31 H 0.03 0.65 7.55 -51.93 -0.39 0.26 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.36 8.17 5.51 -39.29 -0.22 7.95 16 34 H 0.40 3.75 9.10 45.56 0.41 4.17 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -32.85 323.41 -6.59 -39.44 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.05 Total: 8.19 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.38 Total: -7.75 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.31 Total: -40.58 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.83 Total: -18.36 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.94 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.40 Total: -2.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.85 -6.59 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.916 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds