Wall clock time and date at job start Tue Mar 31 2020 10:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47535 * 2 1 4 4 H 1.08997 * 109.47672 * 181.47169 * 3 2 1 5 5 C 1.50697 * 109.46957 * 301.47756 * 3 2 1 6 6 H 1.08003 * 120.00194 * 120.00071 * 5 3 2 7 7 C 1.37875 * 119.99815 * 299.99130 * 5 3 2 8 8 N 1.31514 * 120.00093 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00169 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47308 * 89.99253 * 9 7 5 11 11 H 1.48496 * 109.47285 * 209.99708 * 9 7 5 12 12 H 1.48504 * 109.46970 * 329.99443 * 9 7 5 13 13 N 1.46906 * 109.46811 * 61.47226 * 3 2 1 14 14 C 1.46900 * 111.00005 * 86.28621 * 13 3 2 15 15 H 1.09005 * 109.46823 * 327.68286 * 14 13 3 16 16 C 1.50702 * 109.47267 * 87.67978 * 14 13 3 17 17 O 1.20823 * 120.00243 * 359.97438 * 16 14 13 18 18 O 1.34228 * 119.99628 * 180.02562 * 16 14 13 19 19 C 1.50700 * 109.47345 * 207.68378 * 14 13 3 20 20 C 1.38464 * 120.01405 * 314.72291 * 19 14 13 21 21 F 1.35104 * 120.02180 * 359.97438 * 20 19 14 22 22 C 1.38444 * 119.95685 * 179.74174 * 20 19 14 23 23 C 1.38226 * 120.00623 * 0.53074 * 22 20 19 24 24 C 1.38205 * 120.03485 * 359.72317 * 23 22 20 25 25 C 1.38290 * 120.02474 * 134.99468 * 19 14 13 26 26 Cl 1.73600 * 119.99664 * 359.97438 * 25 19 14 27 27 H 1.08994 * 109.47184 * 305.56364 * 1 2 3 28 28 H 1.09003 * 109.47094 * 65.56062 * 1 2 3 29 29 H 1.09000 * 109.47314 * 185.56154 * 1 2 3 30 30 H 1.08998 * 109.47704 * 239.99789 * 2 1 3 31 31 H 1.09000 * 109.46972 * 119.99955 * 2 1 3 32 32 H 0.97004 * 120.00129 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99964 * 210.23252 * 13 3 2 34 34 H 0.96698 * 117.00013 * 180.02562 * 18 16 14 35 35 H 1.08000 * 119.99612 * 180.25518 * 22 20 19 36 36 H 1.07995 * 119.98393 * 179.69531 * 23 22 20 37 37 H 1.07995 * 119.98377 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4426 -0.0264 5 6 1.5081 2.1633 -1.2117 6 1 0.8899 3.0405 -1.0901 7 6 1.8107 1.7031 -2.4757 8 7 1.3469 2.3325 -3.5332 9 14 2.8795 0.1856 -2.6861 10 1 2.0196 -1.0245 -2.7212 11 1 3.6410 0.2888 -3.9568 12 1 3.8277 0.0862 -1.5475 13 7 1.5796 2.1246 1.2169 14 6 2.5070 1.8939 2.3326 15 1 2.9543 0.9047 2.2346 16 6 3.5915 2.9401 2.3090 17 8 3.5921 3.7903 1.4505 18 8 4.5572 2.9266 3.2410 19 6 1.7556 1.9786 3.6362 20 6 0.8579 3.0104 3.8524 21 9 0.6555 3.9420 2.8951 22 6 0.1642 3.0840 5.0482 23 6 0.3761 2.1342 6.0299 24 6 1.2760 1.1073 5.8161 25 6 1.9663 1.0291 4.6193 26 17 3.0964 -0.2613 4.3517 27 1 -0.3633 0.5977 0.8359 28 1 -0.3633 0.4252 -0.9356 29 1 -0.3634 -1.0228 0.0996 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5595 2.0085 -4.4225 33 1 1.4514 3.1116 1.0516 34 1 5.2309 3.6181 3.1851 35 1 -0.5392 3.8862 5.2159 36 1 -0.1615 2.1948 6.9645 37 1 1.4412 0.3659 6.5838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:16 Heat of formation + Delta-G solvation = -127.679573 kcal Electronic energy + Delta-G solvation = -25230.039384 eV Core-core repulsion = 21333.168292 eV Total energy + Delta-G solvation = -3896.871092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.97785 -41.75129 -40.08843 -38.41893 -37.48166 -37.13818 -35.14308 -33.71703 -31.75075 -31.34928 -29.03867 -27.22903 -25.13254 -23.96242 -23.83631 -22.27922 -21.10057 -19.39721 -19.00285 -18.67333 -18.16369 -17.64755 -17.26135 -16.99488 -16.51481 -16.33002 -15.78401 -15.57210 -15.39689 -15.20998 -14.80876 -14.63770 -14.45320 -14.14686 -13.98202 -13.42280 -13.14924 -12.92908 -12.70258 -12.66044 -12.51706 -12.39888 -12.35321 -12.17053 -12.08775 -11.88580 -11.71573 -11.30299 -11.05116 -10.73352 -9.90518 -9.69647 -9.60553 -8.32192 -6.34648 -0.05657 0.03484 0.95103 1.04946 1.25201 1.29780 1.38805 1.93279 2.27351 2.44187 3.02312 3.12682 3.25915 3.40045 3.73036 3.90442 4.14249 4.23806 4.25085 4.29106 4.39979 4.44991 4.64814 4.79215 4.87502 5.03986 5.09054 5.12463 5.23611 5.29825 5.31146 5.41864 5.55566 5.71238 5.74186 5.80954 6.24004 6.42740 6.69910 6.83399 7.28203 8.84757 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.005421 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.477152 B = 5164.289820 C = 5370.685881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.114 4.114 3 C 0.191 3.809 4 H -0.013 1.013 5 C -0.506 4.506 6 H 0.036 0.964 7 C 0.021 3.979 8 N -0.944 5.944 9 Si 0.941 3.059 10 H -0.256 1.256 11 H -0.297 1.297 12 H -0.257 1.257 13 N -0.638 5.638 14 C 0.128 3.872 15 H 0.129 0.871 16 C 0.453 3.547 17 O -0.535 6.535 18 O -0.499 6.499 19 C -0.114 4.114 20 C 0.104 3.896 21 F -0.144 7.144 22 C -0.148 4.148 23 C -0.058 4.058 24 C -0.113 4.113 25 C -0.002 4.002 26 Cl -0.054 7.054 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.266 0.734 33 H 0.348 0.652 34 H 0.423 0.577 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -4.857 25.241 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.152 4.152 3 C 0.082 3.918 4 H 0.005 0.995 5 C -0.545 4.545 6 H 0.054 0.946 7 C -0.177 4.177 8 N -0.584 5.584 9 Si 0.768 3.232 10 H -0.181 1.181 11 H -0.225 1.225 12 H -0.181 1.181 13 N -0.271 5.271 14 C 0.015 3.985 15 H 0.147 0.853 16 C 0.293 3.707 17 O -0.424 6.424 18 O -0.311 6.311 19 C -0.117 4.117 20 C 0.084 3.916 21 F -0.123 7.123 22 C -0.167 4.167 23 C -0.076 4.076 24 C -0.131 4.131 25 C -0.029 4.029 26 Cl -0.025 7.025 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.170 0.830 34 H 0.284 0.716 35 H 0.181 0.819 36 H 0.205 0.795 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.834 -5.491 24.947 25.557 hybrid contribution 1.806 0.999 -1.817 2.750 sum 2.640 -4.492 23.129 23.709 Atomic orbital electron populations 1.21355 0.94562 0.99939 1.01477 1.21751 0.98334 0.96077 0.99050 1.19486 0.92168 0.92683 0.87465 0.99523 1.21077 1.31210 1.11885 0.90301 0.94579 1.25647 0.96783 0.99923 0.95365 1.70026 1.47240 1.42400 0.98706 0.85975 0.79654 0.80604 0.77011 1.18146 1.22479 1.18132 1.60979 1.42275 1.18400 1.05428 1.20433 0.88188 0.97827 0.92023 0.85325 1.24891 0.82632 0.85272 0.77868 1.90782 1.75373 1.38579 1.37705 1.84537 1.37955 1.56988 1.51645 1.19181 1.00731 0.97113 0.94658 1.17781 0.98201 0.87796 0.87779 1.91496 1.93740 1.63621 1.63393 1.21595 1.00848 1.02793 0.91425 1.21479 0.95535 0.90971 0.99623 1.21489 0.95880 1.00574 0.95174 1.20648 0.95808 0.90911 0.95545 1.98381 1.59859 1.47898 1.96345 0.92119 0.95014 0.92694 0.94576 0.91837 0.92476 0.82985 0.71604 0.81916 0.79469 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.46 71.98 0.68 -4.11 16 2 C -0.11 -4.93 5.27 30.59 0.16 -4.77 16 3 C 0.19 9.35 1.62 44.17 0.07 9.42 16 4 H -0.01 -0.66 6.78 -2.39 -0.02 -0.68 16 5 C -0.51 -29.92 7.94 25.60 0.20 -29.72 16 6 H 0.04 2.39 7.84 -2.91 -0.02 2.37 16 7 C 0.02 1.24 5.45 84.65 0.46 1.70 16 8 N -0.94 -60.43 13.96 21.45 0.30 -60.13 16 9 Si 0.94 46.35 24.36 68.60 1.67 48.02 16 10 H -0.26 -11.76 6.88 99.48 0.68 -11.08 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.26 -12.00 6.53 99.48 0.65 -11.35 16 13 N -0.64 -27.55 4.49 -481.03 -2.16 -29.71 16 14 C 0.13 4.55 2.18 43.42 0.09 4.64 16 15 H 0.13 4.43 5.43 -2.38 -0.01 4.42 16 16 C 0.45 16.36 7.35 71.24 0.52 16.88 16 17 O -0.54 -23.94 16.44 21.97 0.36 -23.57 16 18 O -0.50 -13.16 13.34 -51.39 -0.69 -13.84 16 19 C -0.11 -3.29 4.88 -19.80 -0.10 -3.39 16 20 C 0.10 2.92 7.01 22.37 0.16 3.08 16 21 F -0.14 -5.05 14.85 44.97 0.67 -4.39 16 22 C -0.15 -2.71 10.03 22.32 0.22 -2.48 16 23 C -0.06 -0.70 10.04 22.26 0.22 -0.47 16 24 C -0.11 -1.64 9.83 22.30 0.22 -1.42 16 25 C 0.00 -0.04 6.31 22.32 0.14 0.10 16 26 Cl -0.05 -1.20 27.08 -2.72 -0.07 -1.27 16 27 H 0.06 2.46 7.48 -2.39 -0.02 2.44 16 28 H 0.03 1.49 7.38 -2.39 -0.02 1.47 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.62 3.30 -2.39 -0.01 1.61 16 31 H 0.06 2.35 7.55 -2.39 -0.02 2.33 16 32 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 33 H 0.35 16.78 5.51 -89.70 -0.49 16.29 16 34 H 0.42 7.36 9.10 -74.06 -0.67 6.69 16 35 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -76.61 323.41 3.05 -73.57 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.10 Total: 21.86 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 3.06 Total: -10.54 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -1.86 Total: -89.84 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.32 Total: -37.42 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.67 Total: -4.39 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.67 Total: 48.02 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.27 kcal Total: -76.61 3.05 -73.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.112 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds