Wall clock time and date at job start Tue Mar 31 2020 10:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46894 * 109.47019 * 2 1 4 4 C 1.46907 * 111.00243 * 65.30813 * 3 2 1 5 5 C 1.50700 * 109.46848 * 76.11217 * 4 3 2 6 6 H 1.08007 * 119.99802 * 355.39911 * 5 4 3 7 7 C 1.37872 * 119.99863 * 175.38957 * 5 4 3 8 8 N 1.31510 * 119.99996 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99779 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47537 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47010 * 120.00492 * 9 7 5 12 12 H 1.48503 * 109.47283 * 240.00054 * 9 7 5 13 13 C 1.46906 * 111.00180 * 301.35622 * 3 2 1 14 14 H 1.09006 * 109.46912 * 63.95111 * 13 3 2 15 15 C 1.50700 * 109.47252 * 183.95417 * 13 3 2 16 16 O 1.20818 * 120.00233 * 0.02562 * 15 13 3 17 17 O 1.34229 * 119.99532 * 180.02562 * 15 13 3 18 18 C 1.50708 * 109.46858 * 303.95648 * 13 3 2 19 19 C 1.38456 * 120.01694 * 134.99715 * 18 13 3 20 20 F 1.35107 * 120.01936 * 359.97438 * 19 18 13 21 21 C 1.38452 * 119.95950 * 179.97438 * 19 18 13 22 22 C 1.38219 * 119.99795 * 0.02562 * 21 19 18 23 23 C 1.38201 * 120.04416 * 359.97438 * 22 21 19 24 24 C 1.38285 * 120.01805 * 314.72126 * 18 13 3 25 25 Cl 1.73603 * 120.00271 * 0.02562 * 24 18 13 26 26 H 1.08995 * 109.46833 * 297.00832 * 1 2 3 27 27 H 1.09000 * 109.46963 * 177.00748 * 1 2 3 28 28 H 1.08997 * 109.46768 * 57.01254 * 1 2 3 29 29 H 1.09000 * 109.46808 * 119.99887 * 2 1 3 30 30 H 1.08999 * 109.46914 * 240.00009 * 2 1 3 31 31 H 1.08997 * 109.46900 * 196.11436 * 4 3 2 32 32 H 1.09001 * 109.46982 * 316.11524 * 4 3 2 33 33 H 0.97005 * 120.00014 * 179.97438 * 8 7 5 34 34 H 0.96701 * 116.99698 * 180.02562 * 17 15 13 35 35 H 1.08001 * 119.99729 * 180.02562 * 21 19 18 36 36 H 1.08003 * 119.97703 * 180.02562 * 22 21 19 37 37 H 1.07998 * 119.98585 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6551 2.0723 1.2461 5 6 2.5577 1.6065 2.3593 6 1 3.2756 0.8199 2.1791 7 6 2.4671 2.1845 3.6078 8 7 1.5927 3.1419 3.8272 9 14 3.5864 1.6075 4.9875 10 1 4.4740 0.5277 4.4862 11 1 4.4127 2.7459 5.4633 12 1 2.7627 1.0907 6.1099 13 6 1.5224 2.1192 -1.1712 14 1 0.4362 2.1944 -1.1185 15 6 2.1215 3.5019 -1.1888 16 8 2.8848 3.8408 -0.3158 17 8 1.8070 4.3569 -2.1746 18 6 1.9147 1.3856 -2.4278 19 6 0.9889 1.2032 -3.4410 20 9 -0.2668 1.6824 -3.3036 21 6 1.3508 0.5295 -4.5952 22 6 2.6354 0.0390 -4.7351 23 6 3.5595 0.2210 -3.7237 24 6 3.2011 0.8992 -2.5719 25 17 4.3646 1.1329 -1.3047 26 1 -0.3633 0.4667 0.9156 27 1 -0.3633 -1.0263 -0.0536 28 1 -0.3633 0.5595 -0.8620 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.7671 3.1484 1.1136 32 1 0.6196 1.8431 1.4978 33 1 1.5287 3.5484 4.7057 34 1 2.2165 5.2324 -2.1436 35 1 0.6292 0.3873 -5.3861 36 1 2.9174 -0.4861 -5.6358 37 1 4.5629 -0.1630 -3.8339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:21 Heat of formation + Delta-G solvation = -87.708707 kcal Electronic energy + Delta-G solvation = -25523.042293 eV Core-core repulsion = 21627.904468 eV Total energy + Delta-G solvation = -3895.137826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.96769 -40.31717 -38.95070 -37.07779 -35.94019 -35.43377 -32.80539 -31.81445 -30.43692 -29.55910 -27.58775 -25.61692 -23.28748 -22.91070 -22.34132 -21.35061 -19.18031 -17.81463 -17.67418 -16.84508 -16.48643 -16.18361 -15.82006 -15.42046 -15.00217 -14.81875 -14.56207 -14.27521 -13.72962 -13.64169 -13.35902 -12.99931 -12.94175 -12.48158 -12.27023 -11.92843 -11.79806 -11.47640 -11.26572 -11.15750 -11.04065 -10.87345 -10.62907 -10.45091 -10.30205 -10.16283 -10.01983 -9.54790 -9.14197 -8.76866 -8.64217 -8.25969 -7.22450 -5.90488 -3.88094 0.94352 0.97658 2.44773 2.75981 3.24255 3.37745 3.44062 3.45625 3.50387 4.16135 4.46302 4.53536 4.67231 4.74416 5.06094 5.09063 5.35358 5.46141 5.50952 5.64265 5.73707 5.78627 5.84253 5.92119 6.02323 6.05150 6.09766 6.31449 6.56430 6.62128 6.77789 6.91892 7.24948 7.39267 7.86590 8.14752 8.20070 8.43330 8.61034 9.16421 9.72841 11.21106 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.005397 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.595173 B = 5187.045472 C = 5365.578866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.061 3.939 3 N -0.499 5.499 4 C 0.178 3.822 5 C -0.484 4.484 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.133 3.867 14 H 0.082 0.918 15 C 0.473 3.527 16 O -0.450 6.450 17 O -0.527 6.527 18 C -0.104 4.104 19 C 0.126 3.874 20 F -0.130 7.130 21 C -0.160 4.160 22 C -0.079 4.079 23 C -0.133 4.133 24 C 0.010 3.990 25 Cl -0.002 7.002 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.054 0.946 32 H -0.006 1.006 33 H 0.258 0.742 34 H 0.404 0.596 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -5.095 -18.729 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.067 4.067 3 N -0.224 5.224 4 C 0.054 3.946 5 C -0.523 4.523 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 C 0.022 3.978 14 H 0.100 0.900 15 C 0.311 3.689 16 O -0.332 6.332 17 O -0.339 6.339 18 C -0.106 4.106 19 C 0.106 3.894 20 F -0.108 7.108 21 C -0.179 4.179 22 C -0.097 4.097 23 C -0.151 4.151 24 C -0.017 4.017 25 Cl 0.027 6.973 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.011 0.989 33 H 0.067 0.933 34 H 0.262 0.738 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.707 -5.228 -18.207 18.956 hybrid contribution -0.322 0.518 1.027 1.195 sum 0.385 -4.710 -17.180 17.818 Atomic orbital electron populations 1.22452 0.99254 1.01339 1.02136 1.22058 0.92034 0.90531 1.02064 1.62600 1.57391 1.01150 1.01247 1.20138 0.94574 0.95998 0.83893 1.21011 1.18773 1.19136 0.93341 0.92016 1.24920 0.95839 0.95241 0.98664 1.69964 1.35846 1.25917 1.22443 0.86501 0.80673 0.78520 0.82044 1.19781 1.21225 1.21341 1.19821 0.98676 0.87821 0.91432 0.90036 1.22919 0.80136 0.86893 0.78959 1.90821 1.30983 1.76420 1.34985 1.84508 1.70040 1.28417 1.50936 1.19408 0.93019 1.02573 0.95608 1.17332 0.79688 0.97629 0.94725 1.91515 1.37358 1.86019 1.95907 1.21112 0.98288 1.01289 0.97198 1.20923 0.91996 0.98154 0.98661 1.21160 1.01034 1.00443 0.92507 1.20787 0.91080 0.98006 0.91845 1.98493 1.55585 1.94789 1.48395 0.91273 0.92930 0.93665 0.89232 0.92737 0.92850 0.98852 0.93257 0.73777 0.84308 0.84358 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.28 37.16 0.34 -2.97 16 2 C 0.06 1.14 5.34 -3.82 -0.02 1.12 16 3 N -0.50 -10.48 1.91 -230.86 -0.44 -10.92 16 4 C 0.18 4.62 4.12 -4.97 -0.02 4.60 16 5 C -0.48 -13.70 8.68 -34.44 -0.30 -14.00 16 6 H 0.06 1.74 7.65 -52.48 -0.40 1.34 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 9 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.13 2.48 1.36 -70.01 -0.10 2.38 16 14 H 0.08 1.54 5.57 -51.93 -0.29 1.25 16 15 C 0.47 9.17 6.50 36.01 0.23 9.40 16 16 O -0.45 -10.44 14.66 -18.74 -0.27 -10.71 16 17 O -0.53 -8.10 13.34 -39.26 -0.52 -8.62 16 18 C -0.10 -1.62 3.57 -104.52 -0.37 -2.00 16 19 C 0.13 1.73 7.25 -39.42 -0.29 1.44 16 20 F -0.13 -1.88 16.27 2.25 0.04 -1.84 16 21 C -0.16 -1.67 10.03 -39.51 -0.40 -2.07 16 22 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 23 C -0.13 -1.48 9.83 -39.54 -0.39 -1.87 16 24 C 0.01 0.15 5.25 -39.51 -0.21 -0.05 16 25 Cl 0.00 -0.04 25.37 -51.86 -1.32 -1.36 16 26 H 0.07 1.34 6.38 -51.93 -0.33 1.01 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.74 6.31 -51.93 -0.33 0.42 16 29 H 0.09 1.80 7.41 -51.93 -0.39 1.42 16 30 H 0.05 0.92 6.39 -51.93 -0.33 0.59 16 31 H 0.05 1.54 5.26 -51.93 -0.27 1.27 16 32 H -0.01 -0.17 5.94 -51.93 -0.31 -0.47 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.40 4.40 9.10 45.56 0.41 4.81 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -33.37 323.04 -7.00 -40.37 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -3.06 Total: 1.27 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.00 Total: -3.68 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.29 Total: -37.61 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.80 Total: -19.34 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.32 Total: -1.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.37 -7.00 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.338 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds