Wall clock time and date at job start Tue Mar 31 2020 10:54:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 N 1.46894 * 109.47019 * 2 1
4 4 C 1.46907 * 111.00243 * 65.30813 * 3 2 1
5 5 C 1.50700 * 109.46848 * 76.11217 * 4 3 2
6 6 H 1.08007 * 119.99802 * 355.39911 * 5 4 3
7 7 C 1.37872 * 119.99863 * 175.38957 * 5 4 3
8 8 N 1.31510 * 119.99996 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 119.99779 * 180.02562 * 7 5 4
10 10 H 1.48497 * 109.47537 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.47010 * 120.00492 * 9 7 5
12 12 H 1.48503 * 109.47283 * 240.00054 * 9 7 5
13 13 C 1.46906 * 111.00180 * 301.35622 * 3 2 1
14 14 H 1.09006 * 109.46912 * 63.95111 * 13 3 2
15 15 C 1.50700 * 109.47252 * 183.95417 * 13 3 2
16 16 O 1.20818 * 120.00233 * 0.02562 * 15 13 3
17 17 O 1.34229 * 119.99532 * 180.02562 * 15 13 3
18 18 C 1.50708 * 109.46858 * 303.95648 * 13 3 2
19 19 C 1.38456 * 120.01694 * 134.99715 * 18 13 3
20 20 F 1.35107 * 120.01936 * 359.97438 * 19 18 13
21 21 C 1.38452 * 119.95950 * 179.97438 * 19 18 13
22 22 C 1.38219 * 119.99795 * 0.02562 * 21 19 18
23 23 C 1.38201 * 120.04416 * 359.97438 * 22 21 19
24 24 C 1.38285 * 120.01805 * 314.72126 * 18 13 3
25 25 Cl 1.73603 * 120.00271 * 0.02562 * 24 18 13
26 26 H 1.08995 * 109.46833 * 297.00832 * 1 2 3
27 27 H 1.09000 * 109.46963 * 177.00748 * 1 2 3
28 28 H 1.08997 * 109.46768 * 57.01254 * 1 2 3
29 29 H 1.09000 * 109.46808 * 119.99887 * 2 1 3
30 30 H 1.08999 * 109.46914 * 240.00009 * 2 1 3
31 31 H 1.08997 * 109.46900 * 196.11436 * 4 3 2
32 32 H 1.09001 * 109.46982 * 316.11524 * 4 3 2
33 33 H 0.97005 * 120.00014 * 179.97438 * 8 7 5
34 34 H 0.96701 * 116.99698 * 180.02562 * 17 15 13
35 35 H 1.08001 * 119.99729 * 180.02562 * 21 19 18
36 36 H 1.08003 * 119.97703 * 180.02562 * 22 21 19
37 37 H 1.07998 * 119.98585 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.6551 2.0723 1.2461
5 6 2.5577 1.6065 2.3593
6 1 3.2756 0.8199 2.1791
7 6 2.4671 2.1845 3.6078
8 7 1.5927 3.1419 3.8272
9 14 3.5864 1.6075 4.9875
10 1 4.4740 0.5277 4.4862
11 1 4.4127 2.7459 5.4633
12 1 2.7627 1.0907 6.1099
13 6 1.5224 2.1192 -1.1712
14 1 0.4362 2.1944 -1.1185
15 6 2.1215 3.5019 -1.1888
16 8 2.8848 3.8408 -0.3158
17 8 1.8070 4.3569 -2.1746
18 6 1.9147 1.3856 -2.4278
19 6 0.9889 1.2032 -3.4410
20 9 -0.2668 1.6824 -3.3036
21 6 1.3508 0.5295 -4.5952
22 6 2.6354 0.0390 -4.7351
23 6 3.5595 0.2210 -3.7237
24 6 3.2011 0.8992 -2.5719
25 17 4.3646 1.1329 -1.3047
26 1 -0.3633 0.4667 0.9156
27 1 -0.3633 -1.0263 -0.0536
28 1 -0.3633 0.5595 -0.8620
29 1 1.8934 -0.5138 0.8900
30 1 1.8934 -0.5138 -0.8900
31 1 1.7671 3.1484 1.1136
32 1 0.6196 1.8431 1.4978
33 1 1.5287 3.5484 4.7057
34 1 2.2165 5.2324 -2.1436
35 1 0.6292 0.3873 -5.3861
36 1 2.9174 -0.4861 -5.6358
37 1 4.5629 -0.1630 -3.8339
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001596299320.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:20
Heat of formation + Delta-G solvation = -109.128589 kcal
Electronic energy + Delta-G solvation = -25523.971129 eV
Core-core repulsion = 21627.904468 eV
Total energy + Delta-G solvation = -3896.066661 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.082 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-50.01020 -41.74548 -40.10352 -38.55626 -37.11005 -36.93319 -34.82966 -33.18674
-31.36622 -31.14593 -29.20606 -27.33029 -25.03126 -23.96249 -23.54947 -22.85702
-20.70945 -19.15574 -18.82862 -18.35060 -18.07818 -17.64066 -17.17271 -16.59821
-16.55019 -16.21877 -16.01218 -15.58836 -15.27913 -14.93110 -14.59287 -14.43233
-14.12595 -14.05462 -13.89905 -13.37992 -13.20335 -12.86331 -12.78565 -12.71398
-12.54409 -12.31278 -12.26920 -12.12189 -11.95428 -11.71158 -11.61491 -11.28721
-11.14124 -10.48372 -9.84014 -9.63995 -8.91595 -8.12634 -6.17708 -0.02887
0.04563 1.21701 1.37599 1.38235 1.40183 1.52561 1.94466 2.40261
2.48137 3.16175 3.20793 3.26625 3.36854 3.80097 3.92571 4.16588
4.18881 4.27448 4.33752 4.44157 4.47141 4.59399 4.81898 4.85294
4.95278 5.05094 5.17194 5.17996 5.25363 5.35939 5.42675 5.64594
5.70623 5.75426 6.12099 6.37256 6.52402 6.94077 7.06537 7.47723
8.98944
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.017778 B = 0.005397 C = 0.005217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1574.595173 B = 5187.045472 C = 5365.578866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.064 3.936
3 N -0.499 5.499
4 C 0.196 3.804
5 C -0.492 4.492
6 H 0.058 0.942
7 C -0.002 4.002
8 N -0.939 5.939
9 Si 0.961 3.039
10 H -0.264 1.264
11 H -0.285 1.285
12 H -0.277 1.277
13 C 0.133 3.867
14 H 0.074 0.926
15 C 0.477 3.523
16 O -0.498 6.498
17 O -0.513 6.513
18 C -0.125 4.125
19 C 0.111 3.889
20 F -0.140 7.140
21 C -0.144 4.144
22 C -0.056 4.056
23 C -0.124 4.124
24 C -0.008 4.008
25 Cl -0.041 7.041
26 H 0.038 0.962
27 H 0.080 0.920
28 H 0.051 0.949
29 H 0.069 0.931
30 H 0.079 0.921
31 H 0.022 0.978
32 H -0.029 1.029
33 H 0.259 0.741
34 H 0.424 0.576
35 H 0.173 0.827
36 H 0.187 0.813
37 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.554 -7.129 -21.746 22.891
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.063 4.063
3 N -0.224 5.224
4 C 0.070 3.930
5 C -0.531 4.531
6 H 0.076 0.924
7 C -0.199 4.199
8 N -0.581 5.581
9 Si 0.787 3.213
10 H -0.188 1.188
11 H -0.212 1.212
12 H -0.203 1.203
13 C 0.023 3.977
14 H 0.092 0.908
15 C 0.317 3.683
16 O -0.384 6.384
17 O -0.326 6.326
18 C -0.127 4.127
19 C 0.091 3.909
20 F -0.118 7.118
21 C -0.162 4.162
22 C -0.074 4.074
23 C -0.143 4.143
24 C -0.035 4.035
25 Cl -0.011 7.011
26 H 0.057 0.943
27 H 0.099 0.901
28 H 0.070 0.930
29 H 0.087 0.913
30 H 0.097 0.903
31 H 0.040 0.960
32 H -0.011 1.011
33 H 0.068 0.932
34 H 0.285 0.715
35 H 0.190 0.810
36 H 0.205 0.795
37 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 1.117 -7.265 -21.270 22.504
hybrid contribution -0.499 1.150 1.731 2.137
sum 0.618 -6.115 -19.539 20.483
Atomic orbital electron populations
1.22330 0.98103 1.02867 1.00786 1.22044 0.92945 0.89199 1.02157
1.62382 1.57893 1.01912 1.00192 1.19687 0.92819 0.94533 0.85931
1.21308 1.18648 1.18758 0.94345 0.92425 1.25795 0.97351 0.95390
1.01341 1.70097 1.37602 1.27263 1.23098 0.85448 0.78783 0.78126
0.78932 1.18836 1.21154 1.20302 1.19768 0.97930 0.87921 0.92086
0.90838 1.23171 0.79124 0.87512 0.78511 1.90800 1.33371 1.77354
1.36862 1.84451 1.69607 1.29364 1.49226 1.19193 0.94269 1.04356
0.94921 1.17587 0.79047 0.98737 0.95505 1.91492 1.37903 1.86367
1.96048 1.21560 0.99483 0.98955 0.96236 1.21476 0.90564 0.96171
0.99158 1.21511 1.02665 0.98850 0.91276 1.20926 0.90126 1.00104
0.92384 1.98480 1.56904 1.95229 1.50506 0.94315 0.90074 0.93002
0.91262 0.90301 0.95995 1.01125 0.93191 0.71477 0.80955 0.79531
0.82106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -6.31 9.28 71.99 0.67 -5.64 16
2 C 0.06 2.42 5.34 86.31 0.46 2.88 16
3 N -0.50 -21.76 1.91 -884.30 -1.69 -23.45 16
4 C 0.20 10.74 4.12 85.56 0.35 11.10 16
5 C -0.49 -28.99 8.68 25.60 0.22 -28.77 16
6 H 0.06 3.36 7.65 -2.91 -0.02 3.34 16
7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16
8 N -0.94 -59.31 13.29 21.44 0.28 -59.02 16
9 Si 0.96 46.93 29.54 68.60 2.03 48.95 16
10 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16
11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16
12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16
13 C 0.13 5.09 1.36 43.42 0.06 5.15 16
14 H 0.07 2.89 5.57 -2.38 -0.01 2.88 16
15 C 0.48 19.15 6.50 71.24 0.46 19.62 16
16 O -0.50 -24.36 14.66 21.99 0.32 -24.04 16
17 O -0.51 -15.83 13.34 -51.41 -0.69 -16.52 16
18 C -0.13 -3.78 3.57 -19.80 -0.07 -3.85 16
19 C 0.11 2.76 7.25 22.37 0.16 2.92 16
20 F -0.14 -3.82 16.27 44.97 0.73 -3.09 16
21 C -0.14 -2.28 10.03 22.32 0.22 -2.06 16
22 C -0.06 -0.70 10.04 22.26 0.22 -0.48 16
23 C -0.12 -2.29 9.83 22.30 0.22 -2.07 16
24 C -0.01 -0.22 5.25 22.32 0.12 -0.11 16
25 Cl -0.04 -1.43 25.37 -2.72 -0.07 -1.50 16
26 H 0.04 1.56 6.38 -2.39 -0.02 1.55 16
27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
28 H 0.05 1.71 6.31 -2.39 -0.02 1.69 16
29 H 0.07 2.87 7.41 -2.39 -0.02 2.85 16
30 H 0.08 2.60 6.39 -2.39 -0.02 2.58 16
31 H 0.02 1.36 5.26 -2.39 -0.01 1.34 16
32 H -0.03 -1.67 5.94 -2.39 -0.01 -1.68 16
33 H 0.26 15.47 8.31 -92.70 -0.77 14.69 16
34 H 0.42 9.19 9.10 -74.06 -0.67 8.51 16
35 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16
36 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16
37 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16
Total: -1.00 -77.16 323.04 4.94 -72.21
By element:
Atomic # 1 Polarization: 6.94 SS G_CDS: 0.46 Total: 7.40 kcal
Atomic # 6 Polarization: -4.52 SS G_CDS: 3.56 Total: -0.96 kcal
Atomic # 7 Polarization: -81.06 SS G_CDS: -1.41 Total: -82.47 kcal
Atomic # 8 Polarization: -40.19 SS G_CDS: -0.36 Total: -40.56 kcal
Atomic # 9 Polarization: -3.82 SS G_CDS: 0.73 Total: -3.09 kcal
Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal
Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal
Total: -77.16 4.94 -72.21 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001596299320.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.915 kcal
(2) G-P(sol) polarization free energy of solvation -77.156 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds