Wall clock time and date at job start Tue Mar 31 2020 10:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46894 * 109.47019 * 2 1 4 4 C 1.46907 * 111.00243 * 65.30813 * 3 2 1 5 5 C 1.50700 * 109.46848 * 76.11217 * 4 3 2 6 6 H 1.08007 * 119.99802 * 355.39911 * 5 4 3 7 7 C 1.37872 * 119.99863 * 175.38957 * 5 4 3 8 8 N 1.31510 * 119.99996 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99779 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47537 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47010 * 120.00492 * 9 7 5 12 12 H 1.48503 * 109.47283 * 240.00054 * 9 7 5 13 13 C 1.46906 * 111.00180 * 301.35622 * 3 2 1 14 14 H 1.09006 * 109.46912 * 63.95111 * 13 3 2 15 15 C 1.50700 * 109.47252 * 183.95417 * 13 3 2 16 16 O 1.20818 * 120.00233 * 0.02562 * 15 13 3 17 17 O 1.34229 * 119.99532 * 180.02562 * 15 13 3 18 18 C 1.50708 * 109.46858 * 303.95648 * 13 3 2 19 19 C 1.38456 * 120.01694 * 134.99715 * 18 13 3 20 20 F 1.35107 * 120.01936 * 359.97438 * 19 18 13 21 21 C 1.38452 * 119.95950 * 179.97438 * 19 18 13 22 22 C 1.38219 * 119.99795 * 0.02562 * 21 19 18 23 23 C 1.38201 * 120.04416 * 359.97438 * 22 21 19 24 24 C 1.38285 * 120.01805 * 314.72126 * 18 13 3 25 25 Cl 1.73603 * 120.00271 * 0.02562 * 24 18 13 26 26 H 1.08995 * 109.46833 * 297.00832 * 1 2 3 27 27 H 1.09000 * 109.46963 * 177.00748 * 1 2 3 28 28 H 1.08997 * 109.46768 * 57.01254 * 1 2 3 29 29 H 1.09000 * 109.46808 * 119.99887 * 2 1 3 30 30 H 1.08999 * 109.46914 * 240.00009 * 2 1 3 31 31 H 1.08997 * 109.46900 * 196.11436 * 4 3 2 32 32 H 1.09001 * 109.46982 * 316.11524 * 4 3 2 33 33 H 0.97005 * 120.00014 * 179.97438 * 8 7 5 34 34 H 0.96701 * 116.99698 * 180.02562 * 17 15 13 35 35 H 1.08001 * 119.99729 * 180.02562 * 21 19 18 36 36 H 1.08003 * 119.97703 * 180.02562 * 22 21 19 37 37 H 1.07998 * 119.98585 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6551 2.0723 1.2461 5 6 2.5577 1.6065 2.3593 6 1 3.2756 0.8199 2.1791 7 6 2.4671 2.1845 3.6078 8 7 1.5927 3.1419 3.8272 9 14 3.5864 1.6075 4.9875 10 1 4.4740 0.5277 4.4862 11 1 4.4127 2.7459 5.4633 12 1 2.7627 1.0907 6.1099 13 6 1.5224 2.1192 -1.1712 14 1 0.4362 2.1944 -1.1185 15 6 2.1215 3.5019 -1.1888 16 8 2.8848 3.8408 -0.3158 17 8 1.8070 4.3569 -2.1746 18 6 1.9147 1.3856 -2.4278 19 6 0.9889 1.2032 -3.4410 20 9 -0.2668 1.6824 -3.3036 21 6 1.3508 0.5295 -4.5952 22 6 2.6354 0.0390 -4.7351 23 6 3.5595 0.2210 -3.7237 24 6 3.2011 0.8992 -2.5719 25 17 4.3646 1.1329 -1.3047 26 1 -0.3633 0.4667 0.9156 27 1 -0.3633 -1.0263 -0.0536 28 1 -0.3633 0.5595 -0.8620 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.7671 3.1484 1.1136 32 1 0.6196 1.8431 1.4978 33 1 1.5287 3.5484 4.7057 34 1 2.2165 5.2324 -2.1436 35 1 0.6292 0.3873 -5.3861 36 1 2.9174 -0.4861 -5.6358 37 1 4.5629 -0.1630 -3.8339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596299320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:20 Heat of formation + Delta-G solvation = -109.128589 kcal Electronic energy + Delta-G solvation = -25523.971129 eV Core-core repulsion = 21627.904468 eV Total energy + Delta-G solvation = -3896.066661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01020 -41.74548 -40.10352 -38.55626 -37.11005 -36.93319 -34.82966 -33.18674 -31.36622 -31.14593 -29.20606 -27.33029 -25.03126 -23.96249 -23.54947 -22.85702 -20.70945 -19.15574 -18.82862 -18.35060 -18.07818 -17.64066 -17.17271 -16.59821 -16.55019 -16.21877 -16.01218 -15.58836 -15.27913 -14.93110 -14.59287 -14.43233 -14.12595 -14.05462 -13.89905 -13.37992 -13.20335 -12.86331 -12.78565 -12.71398 -12.54409 -12.31278 -12.26920 -12.12189 -11.95428 -11.71158 -11.61491 -11.28721 -11.14124 -10.48372 -9.84014 -9.63995 -8.91595 -8.12634 -6.17708 -0.02887 0.04563 1.21701 1.37599 1.38235 1.40183 1.52561 1.94466 2.40261 2.48137 3.16175 3.20793 3.26625 3.36854 3.80097 3.92571 4.16588 4.18881 4.27448 4.33752 4.44157 4.47141 4.59399 4.81898 4.85294 4.95278 5.05094 5.17194 5.17996 5.25363 5.35939 5.42675 5.64594 5.70623 5.75426 6.12099 6.37256 6.52402 6.94077 7.06537 7.47723 8.98944 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.005397 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.595173 B = 5187.045472 C = 5365.578866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 N -0.499 5.499 4 C 0.196 3.804 5 C -0.492 4.492 6 H 0.058 0.942 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.961 3.039 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.277 1.277 13 C 0.133 3.867 14 H 0.074 0.926 15 C 0.477 3.523 16 O -0.498 6.498 17 O -0.513 6.513 18 C -0.125 4.125 19 C 0.111 3.889 20 F -0.140 7.140 21 C -0.144 4.144 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.008 4.008 25 Cl -0.041 7.041 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.022 0.978 32 H -0.029 1.029 33 H 0.259 0.741 34 H 0.424 0.576 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -7.129 -21.746 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.063 4.063 3 N -0.224 5.224 4 C 0.070 3.930 5 C -0.531 4.531 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.023 3.977 14 H 0.092 0.908 15 C 0.317 3.683 16 O -0.384 6.384 17 O -0.326 6.326 18 C -0.127 4.127 19 C 0.091 3.909 20 F -0.118 7.118 21 C -0.162 4.162 22 C -0.074 4.074 23 C -0.143 4.143 24 C -0.035 4.035 25 Cl -0.011 7.011 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.040 0.960 32 H -0.011 1.011 33 H 0.068 0.932 34 H 0.285 0.715 35 H 0.190 0.810 36 H 0.205 0.795 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.117 -7.265 -21.270 22.504 hybrid contribution -0.499 1.150 1.731 2.137 sum 0.618 -6.115 -19.539 20.483 Atomic orbital electron populations 1.22330 0.98103 1.02867 1.00786 1.22044 0.92945 0.89199 1.02157 1.62382 1.57893 1.01912 1.00192 1.19687 0.92819 0.94533 0.85931 1.21308 1.18648 1.18758 0.94345 0.92425 1.25795 0.97351 0.95390 1.01341 1.70097 1.37602 1.27263 1.23098 0.85448 0.78783 0.78126 0.78932 1.18836 1.21154 1.20302 1.19768 0.97930 0.87921 0.92086 0.90838 1.23171 0.79124 0.87512 0.78511 1.90800 1.33371 1.77354 1.36862 1.84451 1.69607 1.29364 1.49226 1.19193 0.94269 1.04356 0.94921 1.17587 0.79047 0.98737 0.95505 1.91492 1.37903 1.86367 1.96048 1.21560 0.99483 0.98955 0.96236 1.21476 0.90564 0.96171 0.99158 1.21511 1.02665 0.98850 0.91276 1.20926 0.90126 1.00104 0.92384 1.98480 1.56904 1.95229 1.50506 0.94315 0.90074 0.93002 0.91262 0.90301 0.95995 1.01125 0.93191 0.71477 0.80955 0.79531 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.31 9.28 71.99 0.67 -5.64 16 2 C 0.06 2.42 5.34 86.31 0.46 2.88 16 3 N -0.50 -21.76 1.91 -884.30 -1.69 -23.45 16 4 C 0.20 10.74 4.12 85.56 0.35 11.10 16 5 C -0.49 -28.99 8.68 25.60 0.22 -28.77 16 6 H 0.06 3.36 7.65 -2.91 -0.02 3.34 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -59.31 13.29 21.44 0.28 -59.02 16 9 Si 0.96 46.93 29.54 68.60 2.03 48.95 16 10 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 C 0.13 5.09 1.36 43.42 0.06 5.15 16 14 H 0.07 2.89 5.57 -2.38 -0.01 2.88 16 15 C 0.48 19.15 6.50 71.24 0.46 19.62 16 16 O -0.50 -24.36 14.66 21.99 0.32 -24.04 16 17 O -0.51 -15.83 13.34 -51.41 -0.69 -16.52 16 18 C -0.13 -3.78 3.57 -19.80 -0.07 -3.85 16 19 C 0.11 2.76 7.25 22.37 0.16 2.92 16 20 F -0.14 -3.82 16.27 44.97 0.73 -3.09 16 21 C -0.14 -2.28 10.03 22.32 0.22 -2.06 16 22 C -0.06 -0.70 10.04 22.26 0.22 -0.48 16 23 C -0.12 -2.29 9.83 22.30 0.22 -2.07 16 24 C -0.01 -0.22 5.25 22.32 0.12 -0.11 16 25 Cl -0.04 -1.43 25.37 -2.72 -0.07 -1.50 16 26 H 0.04 1.56 6.38 -2.39 -0.02 1.55 16 27 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.71 6.31 -2.39 -0.02 1.69 16 29 H 0.07 2.87 7.41 -2.39 -0.02 2.85 16 30 H 0.08 2.60 6.39 -2.39 -0.02 2.58 16 31 H 0.02 1.36 5.26 -2.39 -0.01 1.34 16 32 H -0.03 -1.67 5.94 -2.39 -0.01 -1.68 16 33 H 0.26 15.47 8.31 -92.70 -0.77 14.69 16 34 H 0.42 9.19 9.10 -74.06 -0.67 8.51 16 35 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -77.16 323.04 4.94 -72.21 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.46 Total: 7.40 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 3.56 Total: -0.96 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.41 Total: -82.47 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -0.36 Total: -40.56 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.73 Total: -3.09 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal Total: -77.16 4.94 -72.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.915 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds