Wall clock time and date at job start Tue Mar 31 2020 10:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46666 * 2 1 4 4 N 1.28441 * 125.18884 * 275.29672 * 3 2 1 5 5 C 1.30854 * 111.00166 * 180.25868 * 4 3 2 6 6 C 1.39781 * 107.89509 * 359.73515 * 5 4 3 7 7 Cl 1.73598 * 127.34372 * 179.97438 * 6 5 4 8 8 C 1.36790 * 125.19402 * 95.10555 * 3 2 1 9 9 C 1.46892 * 126.91393 * 0.02562 * 8 3 2 10 10 O 1.21697 * 120.00034 * 268.09610 * 9 8 3 11 11 N 1.34778 * 120.00167 * 88.09636 * 9 8 3 12 12 C 1.36858 * 119.99729 * 355.73206 * 11 9 8 13 13 H 1.08001 * 119.99708 * 41.05995 * 12 11 9 14 14 C 1.39034 * 120.00011 * 220.78008 * 12 11 9 15 15 N 1.31373 * 120.00066 * 8.08748 * 14 12 11 16 16 Si 1.86806 * 120.00025 * 188.07767 * 14 12 11 17 17 H 1.48494 * 109.46729 * 94.99694 * 16 14 12 18 18 H 1.48496 * 109.47111 * 214.99945 * 16 14 12 19 19 H 1.48506 * 109.46854 * 334.99994 * 16 14 12 20 20 C 1.46497 * 120.00351 * 175.73786 * 11 9 8 21 21 C 1.52997 * 109.47251 * 275.78579 * 20 11 9 22 22 C 1.50701 * 109.47468 * 179.97438 * 21 20 11 23 23 O 1.20817 * 119.99657 * 0.02562 * 22 21 20 24 24 O 1.34229 * 119.99706 * 179.97438 * 22 21 20 25 25 H 1.08995 * 109.47316 * 304.96675 * 1 2 3 26 26 H 1.08995 * 109.47420 * 64.97338 * 1 2 3 27 27 H 1.09007 * 109.46717 * 184.97137 * 1 2 3 28 28 H 1.09002 * 109.47333 * 240.00549 * 2 1 3 29 29 H 1.08992 * 109.47671 * 119.99533 * 2 1 3 30 30 H 1.08002 * 126.05504 * 179.76377 * 5 4 3 31 31 H 0.96999 * 119.99693 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.46919 * 35.77869 * 20 11 9 33 33 H 1.09003 * 109.47290 * 155.78215 * 20 11 9 34 34 H 1.09004 * 109.46891 * 300.00209 * 21 20 11 35 35 H 1.09003 * 109.47270 * 59.99625 * 21 20 11 36 36 H 0.96703 * 116.99329 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.1735 2.1114 -1.0452 5 6 2.6294 3.2958 -0.7264 6 6 2.7789 3.3389 0.6627 7 17 3.3497 4.6701 1.6197 8 6 2.3748 2.0915 1.1134 9 6 2.3421 1.6243 2.5057 10 8 1.3513 1.8112 3.1872 11 7 3.4095 0.9888 3.0285 12 6 4.4892 0.7010 2.2383 13 1 4.8425 1.4273 1.5213 14 6 5.1348 -0.5241 2.3625 15 7 4.6182 -1.4650 3.1200 16 14 6.7367 -0.8323 1.4523 17 1 7.8813 -0.5385 2.3515 18 1 6.7965 -2.2524 1.0225 19 1 6.8055 0.0493 0.2592 20 6 3.4140 0.6059 4.4425 21 6 3.8691 1.7946 5.2914 22 6 3.8731 1.4010 6.7461 23 8 3.5459 0.2841 7.0705 24 8 4.2410 2.2910 7.6811 25 1 -0.3634 0.5889 0.8421 26 1 -0.3634 0.4347 -0.9311 27 1 -0.3633 -1.0239 0.0891 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 2.8505 4.0983 -1.4146 31 1 5.0685 -2.3198 3.2063 32 1 2.4086 0.3095 4.7418 33 1 4.0983 -0.2295 4.5906 34 1 4.8744 2.0911 4.9920 35 1 3.1847 2.6301 5.1433 36 1 4.2272 1.9924 8.6008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597958365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:12 Heat of formation + Delta-G solvation = -53.153920 kcal Electronic energy + Delta-G solvation = -24951.182286 eV Core-core repulsion = 21077.462830 eV Total energy + Delta-G solvation = -3873.719456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01206 -39.85947 -38.51545 -36.06486 -35.83877 -35.13080 -34.08964 -32.11540 -31.14939 -29.67120 -29.35326 -25.38770 -24.60065 -23.64139 -21.89113 -21.06437 -20.21567 -19.22818 -18.02633 -17.69225 -16.48285 -15.98233 -15.80773 -15.52337 -15.30600 -14.85897 -14.46860 -14.39564 -13.82293 -13.68418 -13.26178 -12.96918 -12.75402 -12.52017 -12.47446 -11.92655 -11.81110 -11.38835 -11.31715 -11.27702 -11.17516 -11.12958 -11.01824 -10.92442 -10.49823 -10.25527 -10.14105 -9.98664 -9.37595 -9.01816 -8.67948 -8.14069 -7.81646 -6.54766 -4.39359 2.19873 2.37800 2.63958 2.95441 2.97217 3.09516 3.11288 3.14909 3.34611 3.66232 3.95313 4.47117 4.76892 4.93416 5.20899 5.33703 5.50429 5.53976 5.56932 5.74905 5.80002 5.83768 5.91073 6.09252 6.10106 6.27123 6.27477 6.67757 6.74198 6.81503 7.16246 7.18736 7.37028 7.61609 8.15533 8.27633 8.46594 8.80189 9.11758 9.55245 10.43772 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.006429 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.818963 B = 4353.891584 C = 5197.249682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.259 5.259 4 N -0.292 5.292 5 C 0.016 3.984 6 C -0.142 4.142 7 Cl -0.038 7.038 8 C 0.065 3.935 9 C 0.534 3.466 10 O -0.579 6.579 11 N -0.414 5.414 12 C -0.344 4.344 13 H 0.092 0.908 14 C 0.049 3.951 15 N -0.859 5.859 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.266 1.266 20 C 0.122 3.878 21 C -0.128 4.128 22 C 0.484 3.516 23 O -0.513 6.513 24 O -0.524 6.524 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.184 0.816 31 H 0.275 0.725 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 4.342 -1.897 4.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 N -0.046 5.046 4 N -0.122 5.122 5 C -0.163 4.163 6 C -0.180 4.180 7 Cl -0.010 7.010 8 C -0.066 4.066 9 C 0.319 3.681 10 O -0.462 6.462 11 N -0.131 5.131 12 C -0.472 4.472 13 H 0.110 0.890 14 C -0.158 4.158 15 N -0.495 5.495 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.191 1.191 20 C -0.001 4.001 21 C -0.166 4.166 22 C 0.327 3.673 23 O -0.401 6.401 24 O -0.335 6.335 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.201 0.799 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.512 3.293 -2.647 4.487 hybrid contribution 1.294 0.298 0.930 1.621 sum -0.218 3.590 -1.717 3.986 Atomic orbital electron populations 1.22157 0.93896 1.03303 1.03212 1.22007 0.95416 0.76561 1.05929 1.45529 1.45345 1.11869 1.01875 1.73080 1.20887 1.04093 1.14177 1.23252 1.04616 0.95668 0.92713 1.21032 1.13782 0.90987 0.92182 1.98292 1.87717 1.43646 1.71370 1.21355 1.03175 0.91742 0.90360 1.17137 0.83599 0.83433 0.83896 1.90729 1.32841 1.61368 1.61290 1.43288 1.13697 1.48560 1.07516 1.19519 1.07662 1.00378 1.19622 0.88989 1.25478 0.99313 0.94543 0.96496 1.69717 1.38418 1.04747 1.36578 0.86027 0.81504 0.78093 0.79980 1.19930 1.20553 1.19075 1.21445 1.03728 0.95677 0.79257 1.21862 1.05371 1.03191 0.86213 1.23690 0.72070 0.82389 0.89181 1.90704 1.44420 1.22115 1.82846 1.84592 1.81210 1.46986 1.20757 0.91352 0.91847 0.90318 0.88328 0.87101 0.79861 0.91455 0.91544 0.85129 0.87669 0.88399 0.74087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.12 2.01 6.91 -4.04 -0.03 1.98 16 3 N -0.26 -4.99 3.35 -57.11 -0.19 -5.18 16 4 N -0.29 -5.36 11.89 30.61 0.36 -5.00 16 5 C 0.02 0.28 12.03 -17.39 -0.21 0.07 16 6 C -0.14 -2.75 6.90 -38.85 -0.27 -3.02 16 7 Cl -0.04 -0.68 29.24 -51.86 -1.52 -2.19 16 8 C 0.07 1.38 5.18 -82.00 -0.42 0.96 16 9 C 0.53 12.43 6.69 -12.76 -0.09 12.35 16 10 O -0.58 -14.67 16.76 5.19 0.09 -14.58 16 11 N -0.41 -9.63 2.53 -116.22 -0.29 -9.93 16 12 C -0.34 -8.09 8.64 -15.01 -0.13 -8.22 16 13 H 0.09 2.21 7.37 -52.49 -0.39 1.83 16 14 C 0.05 1.13 5.19 -17.45 -0.09 1.04 16 15 N -0.86 -20.89 10.99 55.50 0.61 -20.28 16 16 Si 0.92 18.59 29.56 -169.99 -5.03 13.57 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C 0.12 2.77 4.17 -4.04 -0.02 2.76 16 21 C -0.13 -2.44 6.09 -27.88 -0.17 -2.61 16 22 C 0.48 8.67 8.33 36.01 0.30 8.97 16 23 O -0.51 -10.63 16.74 -18.74 -0.31 -10.94 16 24 O -0.52 -7.33 13.42 -39.26 -0.53 -7.86 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.11 2.08 7.65 -51.93 -0.40 1.68 16 30 H 0.18 2.43 8.06 -52.49 -0.42 2.00 16 31 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.07 1.61 7.50 -51.93 -0.39 1.22 16 33 H 0.13 3.20 5.29 -51.93 -0.27 2.93 16 34 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.40 3.66 9.10 45.56 0.41 4.08 16 LS Contribution 338.30 15.07 5.10 5.10 Total: -1.00 -29.55 338.30 -5.58 -35.13 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.13 Total: 9.89 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -0.74 Total: 12.26 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.49 Total: -40.38 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.75 Total: -33.38 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.52 Total: -2.19 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.55 -5.58 -35.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597958365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.025 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds