Wall clock time and date at job start Tue Mar 31 2020 10:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46666 * 2 1 4 4 N 1.28441 * 125.18884 * 275.29672 * 3 2 1 5 5 C 1.30854 * 111.00166 * 180.25868 * 4 3 2 6 6 C 1.39781 * 107.89509 * 359.73515 * 5 4 3 7 7 Cl 1.73598 * 127.34372 * 179.97438 * 6 5 4 8 8 C 1.36790 * 125.19402 * 95.10555 * 3 2 1 9 9 C 1.46892 * 126.91393 * 0.02562 * 8 3 2 10 10 O 1.21697 * 120.00034 * 268.09610 * 9 8 3 11 11 N 1.34778 * 120.00167 * 88.09636 * 9 8 3 12 12 C 1.36858 * 119.99729 * 355.73206 * 11 9 8 13 13 H 1.08001 * 119.99708 * 41.05995 * 12 11 9 14 14 C 1.39034 * 120.00011 * 220.78008 * 12 11 9 15 15 N 1.31373 * 120.00066 * 8.08748 * 14 12 11 16 16 Si 1.86806 * 120.00025 * 188.07767 * 14 12 11 17 17 H 1.48494 * 109.46729 * 94.99694 * 16 14 12 18 18 H 1.48496 * 109.47111 * 214.99945 * 16 14 12 19 19 H 1.48506 * 109.46854 * 334.99994 * 16 14 12 20 20 C 1.46497 * 120.00351 * 175.73786 * 11 9 8 21 21 C 1.52997 * 109.47251 * 275.78579 * 20 11 9 22 22 C 1.50701 * 109.47468 * 179.97438 * 21 20 11 23 23 O 1.20817 * 119.99657 * 0.02562 * 22 21 20 24 24 O 1.34229 * 119.99706 * 179.97438 * 22 21 20 25 25 H 1.08995 * 109.47316 * 304.96675 * 1 2 3 26 26 H 1.08995 * 109.47420 * 64.97338 * 1 2 3 27 27 H 1.09007 * 109.46717 * 184.97137 * 1 2 3 28 28 H 1.09002 * 109.47333 * 240.00549 * 2 1 3 29 29 H 1.08992 * 109.47671 * 119.99533 * 2 1 3 30 30 H 1.08002 * 126.05504 * 179.76377 * 5 4 3 31 31 H 0.96999 * 119.99693 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.46919 * 35.77869 * 20 11 9 33 33 H 1.09003 * 109.47290 * 155.78215 * 20 11 9 34 34 H 1.09004 * 109.46891 * 300.00209 * 21 20 11 35 35 H 1.09003 * 109.47270 * 59.99625 * 21 20 11 36 36 H 0.96703 * 116.99329 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.1735 2.1114 -1.0452 5 6 2.6294 3.2958 -0.7264 6 6 2.7789 3.3389 0.6627 7 17 3.3497 4.6701 1.6197 8 6 2.3748 2.0915 1.1134 9 6 2.3421 1.6243 2.5057 10 8 1.3513 1.8112 3.1872 11 7 3.4095 0.9888 3.0285 12 6 4.4892 0.7010 2.2383 13 1 4.8425 1.4273 1.5213 14 6 5.1348 -0.5241 2.3625 15 7 4.6182 -1.4650 3.1200 16 14 6.7367 -0.8323 1.4523 17 1 7.8813 -0.5385 2.3515 18 1 6.7965 -2.2524 1.0225 19 1 6.8055 0.0493 0.2592 20 6 3.4140 0.6059 4.4425 21 6 3.8691 1.7946 5.2914 22 6 3.8731 1.4010 6.7461 23 8 3.5459 0.2841 7.0705 24 8 4.2410 2.2910 7.6811 25 1 -0.3634 0.5889 0.8421 26 1 -0.3634 0.4347 -0.9311 27 1 -0.3633 -1.0239 0.0891 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 2.8505 4.0983 -1.4146 31 1 5.0685 -2.3198 3.2063 32 1 2.4086 0.3095 4.7418 33 1 4.0983 -0.2295 4.5906 34 1 4.8744 2.0911 4.9920 35 1 3.1847 2.6301 5.1433 36 1 4.2272 1.9924 8.6008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597958365.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:12 Heat of formation + Delta-G solvation = -71.899726 kcal Electronic energy + Delta-G solvation = -24951.995165 eV Core-core repulsion = 21077.462830 eV Total energy + Delta-G solvation = -3874.532335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.46892 -41.32918 -40.27583 -37.49634 -37.26981 -36.88775 -35.42066 -33.90237 -32.82906 -31.22591 -30.68416 -27.19016 -26.25851 -24.97431 -23.43321 -22.50630 -21.74651 -20.93911 -19.59413 -19.12087 -18.11822 -17.60449 -17.36145 -17.01533 -16.82991 -16.38048 -16.10499 -16.01330 -15.24001 -15.21167 -14.79520 -14.49678 -14.35498 -14.01412 -13.79830 -13.59570 -13.09235 -13.00062 -12.94768 -12.78700 -12.71133 -12.59301 -12.55312 -12.29797 -12.11410 -12.00287 -11.66197 -11.43018 -11.18767 -10.82650 -10.13373 -9.69287 -9.59421 -8.34988 -6.25632 0.65640 0.91485 1.18909 1.32831 1.45524 1.52498 1.56584 1.58327 1.89845 2.11156 2.29748 2.82352 2.98471 3.57763 3.89965 3.95932 3.98779 4.06077 4.14786 4.28480 4.36624 4.46372 4.53300 4.67631 4.72253 4.81026 4.93863 5.08780 5.30248 5.32667 5.46988 5.59569 5.75814 5.80746 6.31188 6.97092 7.00340 7.02855 7.30175 7.74077 8.63887 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.006429 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.818963 B = 4353.891584 C = 5197.249682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.115 3.885 3 N -0.262 5.262 4 N -0.292 5.292 5 C 0.025 3.975 6 C -0.148 4.148 7 Cl -0.027 7.027 8 C 0.031 3.969 9 C 0.534 3.466 10 O -0.610 6.610 11 N -0.417 5.417 12 C -0.348 4.348 13 H 0.088 0.912 14 C 0.017 3.983 15 N -0.884 5.884 16 Si 0.977 3.023 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.127 3.873 21 C -0.121 4.121 22 C 0.497 3.503 23 O -0.546 6.546 24 O -0.507 6.507 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.276 0.724 32 H 0.040 0.960 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 5.185 -3.033 6.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.004 4.004 3 N -0.049 5.049 4 N -0.122 5.122 5 C -0.153 4.153 6 C -0.186 4.186 7 Cl 0.001 6.999 8 C -0.101 4.101 9 C 0.320 3.680 10 O -0.496 6.496 11 N -0.134 5.134 12 C -0.476 4.476 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.521 5.521 16 Si 0.801 3.199 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.190 1.190 20 C 0.004 3.996 21 C -0.159 4.159 22 C 0.340 3.660 23 O -0.437 6.437 24 O -0.321 6.321 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.141 0.859 29 H 0.100 0.900 30 H 0.241 0.759 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -0.503 4.151 -3.756 5.620 hybrid contribution 0.974 0.082 1.329 1.650 sum 0.470 4.233 -2.427 4.902 Atomic orbital electron populations 1.22091 0.92049 1.04592 1.02661 1.22166 0.96919 0.75706 1.05616 1.45762 1.45230 1.12481 1.01461 1.73086 1.20876 1.04539 1.13669 1.23887 1.03059 0.96053 0.92299 1.21327 1.13282 0.90687 0.93316 1.98290 1.87504 1.42803 1.71311 1.21206 1.05783 0.93170 0.89929 1.17382 0.82946 0.82904 0.84765 1.90688 1.33826 1.62634 1.62481 1.43411 1.13826 1.48350 1.07773 1.19542 1.07694 1.00541 1.19782 0.89431 1.26130 1.01657 0.94055 0.96898 1.69824 1.39574 1.05116 1.37545 0.85142 0.78157 0.77785 0.78859 1.19456 1.20410 1.18963 1.21234 1.01718 0.96793 0.79874 1.21636 1.05766 1.01417 0.87104 1.23242 0.71455 0.82039 0.89243 1.90704 1.46073 1.23553 1.83321 1.84506 1.80043 1.45477 1.22078 0.94083 0.90415 0.87715 0.85905 0.90008 0.75889 0.91333 0.94174 0.86835 0.86529 0.88368 0.71110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 10.24 71.98 0.74 -3.60 16 2 C 0.12 3.80 6.91 86.38 0.60 4.40 16 3 N -0.26 -9.95 3.35 -334.60 -1.12 -11.07 16 4 N -0.29 -10.15 11.89 -57.07 -0.68 -10.83 16 5 C 0.03 0.80 12.03 85.21 1.03 1.83 16 6 C -0.15 -5.56 6.90 22.74 0.16 -5.41 16 7 Cl -0.03 -0.93 29.24 -2.72 -0.08 -1.01 16 8 C 0.03 1.30 5.18 40.74 0.21 1.51 16 9 C 0.53 25.48 6.69 86.51 0.58 26.06 16 10 O -0.61 -32.09 16.76 -4.34 -0.07 -32.17 16 11 N -0.42 -19.92 2.53 -639.83 -1.62 -21.53 16 12 C -0.35 -16.48 8.64 84.10 0.73 -15.76 16 13 H 0.09 4.20 7.37 -2.91 -0.02 4.18 16 14 C 0.02 0.79 5.19 84.95 0.44 1.24 16 15 N -0.88 -43.68 10.99 21.68 0.24 -43.44 16 16 Si 0.98 37.56 29.56 68.60 2.03 39.59 16 17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 18 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 19 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 20 C 0.13 5.97 4.17 86.38 0.36 6.33 16 21 C -0.12 -4.65 6.09 29.85 0.18 -4.46 16 22 C 0.50 17.53 8.33 71.24 0.59 18.12 16 23 O -0.55 -22.78 16.74 21.99 0.37 -22.41 16 24 O -0.51 -13.15 13.42 -51.41 -0.69 -13.84 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 29 H 0.08 3.17 7.65 -2.39 -0.02 3.16 16 30 H 0.22 5.05 8.06 -2.91 -0.02 5.03 16 31 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 32 H 0.04 2.05 7.50 -2.39 -0.02 2.03 16 33 H 0.11 5.76 5.29 -2.39 -0.01 5.75 16 34 H 0.12 4.20 8.14 -2.38 -0.02 4.18 16 35 H 0.10 3.78 8.14 -2.39 -0.02 3.77 16 36 H 0.43 6.68 9.10 -74.06 -0.67 6.00 16 Total: -1.00 -64.41 338.30 4.45 -59.96 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.47 Total: 26.48 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 5.61 Total: 30.27 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -3.18 Total: -86.87 kcal Atomic # 8 Polarization: -68.02 SS G_CDS: -0.39 Total: -68.41 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -64.41 4.45 -59.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597958365.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.940 kcal (2) G-P(sol) polarization free energy of solvation -64.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds