Wall clock time and date at job start Tue Mar 31 2020 11:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48506 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47300 * 299.99776 * 3 2 1 6 6 H 1.48503 * 109.47118 * 60.00171 * 3 2 1 7 7 C 1.39046 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99617 * 175.09392 * 7 2 1 9 9 N 1.36794 * 120.00062 * 355.09316 * 7 2 1 10 10 C 1.46499 * 120.00353 * 336.85252 * 9 7 2 11 11 C 1.50699 * 109.47203 * 96.30388 * 10 9 7 12 12 O 1.20830 * 119.99617 * 359.97438 * 11 10 9 13 13 O 1.34226 * 120.00603 * 180.02562 * 11 10 9 14 14 C 1.34781 * 120.00182 * 156.85824 * 9 7 2 15 15 O 1.21778 * 119.99809 * 4.84051 * 14 9 7 16 16 C 1.46349 * 120.00097 * 184.84779 * 14 9 7 17 17 C 1.37934 * 125.96177 * 186.82977 * 16 14 9 18 18 C 1.39794 * 106.76564 * 180.02562 * 17 16 14 19 19 C 1.36599 * 107.10979 * 359.97438 * 18 17 16 20 20 C 1.47666 * 125.64914 * 179.97438 * 19 18 17 21 21 C 1.39671 * 120.15068 * 179.97438 * 20 19 18 22 22 C 1.37928 * 119.84322 * 179.97438 * 21 20 19 23 23 C 1.38379 * 120.15264 * 359.97438 * 22 21 20 24 24 C 1.38380 * 120.31045 * 0.04590 * 23 22 21 25 25 C 1.37930 * 120.15363 * 359.95566 * 24 23 22 26 26 O 1.34378 * 108.69814 * 0.26135 * 19 18 17 27 27 H 0.96996 * 119.99813 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47520 * 216.30921 * 10 9 7 29 29 H 1.09005 * 109.46947 * 336.30705 * 10 9 7 30 30 H 0.96701 * 117.00385 * 180.02562 * 13 11 10 31 31 H 1.07996 * 126.61816 * 359.97438 * 17 16 14 32 32 H 1.08001 * 126.44215 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.07818 * 359.70591 * 21 20 19 34 34 H 1.07995 * 119.92296 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.84632 * 180.02562 * 23 22 21 36 36 H 1.08003 * 119.91791 * 179.97438 * 24 23 22 37 37 H 1.07997 * 120.07691 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7078 1.3463 0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8890 2.3964 1.2125 7 6 2.0089 -1.2042 0.0005 8 1 3.0860 -1.2060 -0.0795 9 7 1.3286 -2.3866 0.1024 10 6 -0.0071 -2.4139 0.7035 11 6 -1.0486 -2.3553 -0.3841 12 8 -0.7099 -2.2963 -1.5424 13 8 -2.3526 -2.3676 -0.0661 14 6 1.8873 -3.5267 -0.3501 15 8 3.0309 -3.5200 -0.7686 16 6 1.1195 -4.7726 -0.3387 17 6 1.6057 -6.0265 -0.6450 18 6 0.5378 -6.9180 -0.5067 19 6 -0.5501 -6.1856 -0.1246 20 6 -1.9006 -6.7227 0.1366 21 6 -2.9336 -5.8661 0.5237 22 6 -4.1927 -6.3745 0.7655 23 6 -4.4338 -7.7299 0.6249 24 6 -3.4149 -8.5844 0.2421 25 6 -2.1510 -8.0896 -0.0029 26 8 -0.1893 -4.8945 -0.0319 27 1 -0.4850 0.8400 0.0004 28 1 -0.1298 -3.3340 1.2748 29 1 -0.1250 -1.5564 1.3660 30 1 -2.9834 -2.3287 -0.7980 31 1 2.6162 -6.2721 -0.9365 32 1 0.5674 -7.9850 -0.6709 33 1 -2.7458 -4.8087 0.6376 34 1 -4.9922 -5.7133 1.0653 35 1 -5.4217 -8.1226 0.8151 36 1 -3.6101 -9.6412 0.1347 37 1 -1.3568 -8.7576 -0.3020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:44 Heat of formation + Delta-G solvation = -66.673123 kcal Electronic energy + Delta-G solvation = -26521.869935 eV Core-core repulsion = 22617.704340 eV Total energy + Delta-G solvation = -3904.165594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.18688 -39.33956 -38.93388 -38.02163 -35.36139 -34.59484 -33.03241 -31.95712 -31.80125 -30.93621 -28.43257 -27.71205 -25.27778 -23.33980 -22.88149 -21.42423 -20.98510 -20.60156 -19.57074 -17.68309 -17.26054 -17.01599 -16.57183 -16.06996 -15.85536 -15.39490 -15.06729 -14.86217 -14.51578 -14.14260 -14.06060 -13.51379 -13.32622 -13.11569 -12.82497 -12.74465 -12.61588 -12.42810 -12.00049 -11.71129 -11.43235 -11.36210 -11.10578 -10.99245 -10.59501 -10.44732 -10.37893 -9.84765 -9.69946 -9.31915 -9.16829 -9.02952 -9.00147 -8.08809 -7.61395 -6.61314 -4.11921 0.73780 1.34033 1.92606 2.80093 3.03586 3.09748 3.17093 3.23771 3.56315 3.78127 3.85303 4.03657 4.24981 4.54093 4.72071 4.86159 4.88435 4.95781 5.06428 5.23979 5.35890 5.43956 5.51718 5.76220 5.92900 5.94733 6.03775 6.14257 6.20866 6.39537 6.42317 6.47552 6.49950 6.59070 6.79610 6.87989 7.29759 7.33409 7.51577 7.83488 8.18166 8.84899 8.99106 9.12510 9.59607 10.44760 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.004586 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.966525 B = 6103.776929 C = 7244.344131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.032 3.968 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.296 4.296 8 H 0.113 0.887 9 N -0.409 5.409 10 C 0.142 3.858 11 C 0.505 3.495 12 O -0.512 6.512 13 O -0.532 6.532 14 C 0.523 3.477 15 O -0.558 6.558 16 C -0.017 4.017 17 C -0.160 4.160 18 C -0.187 4.187 19 C 0.012 3.988 20 C -0.007 4.007 21 C -0.103 4.103 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.103 4.103 26 O -0.155 6.155 27 H 0.276 0.724 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.391 0.609 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 -11.890 3.995 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.424 4.424 8 H 0.131 0.869 9 N -0.125 5.125 10 C 0.016 3.984 11 C 0.346 3.654 12 O -0.398 6.398 13 O -0.343 6.343 14 C 0.312 3.688 15 O -0.443 6.443 16 C -0.070 4.070 17 C -0.181 4.181 18 C -0.206 4.206 19 C -0.040 4.040 20 C -0.008 4.008 21 C -0.121 4.121 22 C -0.133 4.133 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.121 4.121 26 O -0.050 6.050 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.247 0.753 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.062 -11.431 3.887 15.096 hybrid contribution -0.262 0.783 -0.731 1.102 sum -9.325 -10.648 3.156 14.501 Atomic orbital electron populations 1.69617 1.06283 1.28412 1.47817 1.25462 0.95680 1.00425 0.95582 0.85583 0.79691 0.79884 0.77935 1.18851 1.20451 1.20347 1.19907 0.93340 0.81204 1.47916 0.86926 1.43314 1.12983 1.06899 1.49354 1.20895 0.80654 1.03819 0.93000 1.23403 0.81267 0.70047 0.90645 1.90603 1.81282 1.45819 1.22062 1.84488 1.18690 1.87015 1.44118 1.16422 0.86994 0.81424 0.83966 1.90728 1.17137 1.84310 1.52088 1.23254 0.80635 0.97456 1.05704 1.21904 1.00678 0.90556 1.04977 1.21576 0.92029 1.00391 1.06609 1.20590 0.94460 0.81936 1.06971 1.17839 0.88816 0.93245 1.00864 1.21505 0.92364 1.00566 0.97686 1.21104 0.96786 0.95460 0.99985 1.21248 0.99131 0.93716 0.99913 1.20997 0.92707 0.99798 1.00238 1.21053 0.97464 0.93412 1.00152 1.84291 1.26157 1.26927 1.67665 0.91345 0.90200 0.84327 0.75337 0.82537 0.83190 0.84643 0.85593 0.86039 0.85710 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.52 8.72 55.50 0.48 -22.03 16 2 C 0.03 0.81 5.21 -17.45 -0.09 0.72 16 3 Si 0.94 20.11 29.56 -169.99 -5.02 15.09 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.30 -8.04 9.32 -15.04 -0.14 -8.18 16 8 H 0.11 3.13 7.36 -52.48 -0.39 2.74 16 9 N -0.41 -10.63 2.17 -117.70 -0.26 -10.88 16 10 C 0.14 3.25 4.78 -5.19 -0.02 3.22 16 11 C 0.51 11.58 4.71 36.00 0.17 11.75 16 12 O -0.51 -13.77 16.81 -18.75 -0.32 -14.09 16 13 O -0.53 -9.75 12.80 -39.25 -0.50 -10.26 16 14 C 0.52 13.57 7.35 -13.00 -0.10 13.47 16 15 O -0.56 -15.75 16.56 5.12 0.08 -15.67 16 16 C -0.02 -0.38 6.66 -36.43 -0.24 -0.62 16 17 C -0.16 -3.03 10.66 -39.11 -0.42 -3.44 16 18 C -0.19 -2.99 10.21 -39.59 -0.40 -3.39 16 19 C 0.01 0.20 7.02 -36.33 -0.25 -0.05 16 20 C -0.01 -0.11 5.87 -104.98 -0.62 -0.72 16 21 C -0.10 -1.42 9.72 -39.16 -0.38 -1.80 16 22 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16 23 C -0.12 -1.18 10.04 -39.48 -0.40 -1.58 16 24 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 25 C -0.10 -1.19 9.56 -39.16 -0.37 -1.57 16 26 O -0.15 -3.12 6.04 3.61 0.02 -3.10 16 27 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.08 1.64 6.04 -51.93 -0.31 1.33 16 29 H 0.14 3.22 6.29 -51.93 -0.33 2.89 16 30 H 0.39 5.63 9.10 45.56 0.41 6.05 16 31 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 32 H 0.15 1.82 7.23 -52.49 -0.38 1.44 16 33 H 0.14 1.99 7.27 -52.49 -0.38 1.60 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 1.23 6.96 -52.49 -0.37 0.86 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -33.20 325.95 -7.22 -40.42 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -2.56 Total: 11.02 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -4.06 Total: 4.58 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.23 Total: -32.92 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.71 Total: -43.11 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.20 -7.22 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.252 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds