Wall clock time and date at job start Tue Mar 31 2020 11:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86797 * 120.00042 * 2 1 4 4 H 1.48506 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47300 * 299.99776 * 3 2 1 6 6 H 1.48503 * 109.47118 * 60.00171 * 3 2 1 7 7 C 1.39046 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99617 * 175.09392 * 7 2 1 9 9 N 1.36794 * 120.00062 * 355.09316 * 7 2 1 10 10 C 1.46499 * 120.00353 * 336.85252 * 9 7 2 11 11 C 1.50699 * 109.47203 * 96.30388 * 10 9 7 12 12 O 1.20830 * 119.99617 * 359.97438 * 11 10 9 13 13 O 1.34226 * 120.00603 * 180.02562 * 11 10 9 14 14 C 1.34781 * 120.00182 * 156.85824 * 9 7 2 15 15 O 1.21778 * 119.99809 * 4.84051 * 14 9 7 16 16 C 1.46349 * 120.00097 * 184.84779 * 14 9 7 17 17 C 1.37934 * 125.96177 * 186.82977 * 16 14 9 18 18 C 1.39794 * 106.76564 * 180.02562 * 17 16 14 19 19 C 1.36599 * 107.10979 * 359.97438 * 18 17 16 20 20 C 1.47666 * 125.64914 * 179.97438 * 19 18 17 21 21 C 1.39671 * 120.15068 * 179.97438 * 20 19 18 22 22 C 1.37928 * 119.84322 * 179.97438 * 21 20 19 23 23 C 1.38379 * 120.15264 * 359.97438 * 22 21 20 24 24 C 1.38380 * 120.31045 * 0.04590 * 23 22 21 25 25 C 1.37930 * 120.15363 * 359.95566 * 24 23 22 26 26 O 1.34378 * 108.69814 * 0.26135 * 19 18 17 27 27 H 0.96996 * 119.99813 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47520 * 216.30921 * 10 9 7 29 29 H 1.09005 * 109.46947 * 336.30705 * 10 9 7 30 30 H 0.96701 * 117.00385 * 180.02562 * 13 11 10 31 31 H 1.07996 * 126.61816 * 359.97438 * 17 16 14 32 32 H 1.08001 * 126.44215 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.07818 * 359.70591 * 21 20 19 34 34 H 1.07995 * 119.92296 * 179.97438 * 22 21 20 35 35 H 1.08001 * 119.84632 * 180.02562 * 23 22 21 36 36 H 1.08003 * 119.91791 * 179.97438 * 24 23 22 37 37 H 1.07997 * 120.07691 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7078 1.3463 0.0006 5 1 1.8891 2.3964 -1.2125 6 1 1.8890 2.3964 1.2125 7 6 2.0089 -1.2042 0.0005 8 1 3.0860 -1.2060 -0.0795 9 7 1.3286 -2.3866 0.1024 10 6 -0.0071 -2.4139 0.7035 11 6 -1.0486 -2.3553 -0.3841 12 8 -0.7099 -2.2963 -1.5424 13 8 -2.3526 -2.3676 -0.0661 14 6 1.8873 -3.5267 -0.3501 15 8 3.0309 -3.5200 -0.7686 16 6 1.1195 -4.7726 -0.3387 17 6 1.6057 -6.0265 -0.6450 18 6 0.5378 -6.9180 -0.5067 19 6 -0.5501 -6.1856 -0.1246 20 6 -1.9006 -6.7227 0.1366 21 6 -2.9336 -5.8661 0.5237 22 6 -4.1927 -6.3745 0.7655 23 6 -4.4338 -7.7299 0.6249 24 6 -3.4149 -8.5844 0.2421 25 6 -2.1510 -8.0896 -0.0029 26 8 -0.1893 -4.8945 -0.0319 27 1 -0.4850 0.8400 0.0004 28 1 -0.1298 -3.3340 1.2748 29 1 -0.1250 -1.5564 1.3660 30 1 -2.9834 -2.3287 -0.7980 31 1 2.6162 -6.2721 -0.9365 32 1 0.5674 -7.9850 -0.6709 33 1 -2.7458 -4.8087 0.6376 34 1 -4.9922 -5.7133 1.0653 35 1 -5.4217 -8.1226 0.8151 36 1 -3.6101 -9.6412 0.1347 37 1 -1.3568 -8.7576 -0.3020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:43 Heat of formation + Delta-G solvation = -87.612220 kcal Electronic energy + Delta-G solvation = -26522.777922 eV Core-core repulsion = 22617.704340 eV Total energy + Delta-G solvation = -3905.073582 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.64860 -41.15538 -40.03675 -39.71796 -37.21115 -36.46886 -34.42532 -33.77614 -33.05331 -31.81574 -29.97497 -29.43785 -27.06153 -24.68164 -23.93068 -23.00432 -22.46317 -21.86515 -21.18563 -19.33122 -18.95817 -18.65908 -18.16951 -17.73001 -17.12424 -16.96340 -16.66163 -16.29656 -15.99729 -15.73907 -15.25081 -15.20899 -14.75321 -14.42027 -14.17343 -14.00230 -13.84349 -13.75405 -13.73999 -13.47648 -13.20391 -12.82168 -12.55659 -12.28920 -12.16756 -12.12485 -11.89655 -11.63768 -11.12416 -11.08009 -10.99805 -10.55516 -10.03252 -9.88365 -8.90826 -8.54749 -6.15764 -0.43514 0.48797 0.54671 1.37265 1.38949 1.50343 1.55801 1.61841 1.78641 2.06033 2.23301 2.45885 2.80284 2.93477 3.01254 3.47085 3.79585 3.90108 4.06784 4.09724 4.21072 4.29585 4.53293 4.54076 4.63393 4.66430 4.74175 4.81391 4.87333 5.03443 5.13679 5.30177 5.33596 5.47952 5.58342 5.60657 5.79128 5.87275 5.97841 6.04168 6.25641 6.87293 7.07307 7.36799 7.65176 8.50459 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.004586 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.966525 B = 6103.776929 C = 7244.344131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.001 3.999 3 Si 1.008 2.992 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.339 4.339 8 H 0.091 0.909 9 N -0.423 5.423 10 C 0.146 3.854 11 C 0.517 3.483 12 O -0.557 6.557 13 O -0.514 6.514 14 C 0.514 3.486 15 O -0.601 6.601 16 C -0.075 4.075 17 C -0.140 4.140 18 C -0.187 4.187 19 C 0.026 3.974 20 C -0.045 4.045 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.098 4.098 26 O -0.168 6.168 27 H 0.281 0.719 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.411 0.589 31 H 0.165 0.835 32 H 0.196 0.804 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -14.367 4.558 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.201 4.201 3 Si 0.830 3.170 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.466 4.466 8 H 0.109 0.891 9 N -0.139 5.139 10 C 0.021 3.979 11 C 0.360 3.640 12 O -0.446 6.446 13 O -0.326 6.326 14 C 0.305 3.695 15 O -0.489 6.489 16 C -0.127 4.127 17 C -0.161 4.161 18 C -0.205 4.205 19 C -0.025 4.025 20 C -0.045 4.045 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.126 4.126 24 C -0.134 4.134 25 C -0.115 4.115 26 O -0.064 6.064 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.150 0.850 30 H 0.270 0.730 31 H 0.183 0.817 32 H 0.213 0.787 33 H 0.133 0.867 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.953 -13.912 4.482 18.881 hybrid contribution 0.313 1.289 -0.870 1.586 sum -11.640 -12.622 3.613 17.546 Atomic orbital electron populations 1.69684 1.07053 1.29308 1.47314 1.26269 0.96603 1.02882 0.94331 0.84660 0.78148 0.75756 0.78430 1.19249 1.20542 1.18133 1.19901 0.92932 0.82733 1.51012 0.89127 1.43432 1.13951 1.06738 1.49778 1.20887 0.79771 1.04301 0.92921 1.23260 0.82303 0.68727 0.89682 1.90581 1.82263 1.48115 1.23685 1.84416 1.17294 1.86104 1.44760 1.16926 0.86922 0.82672 0.82979 1.90650 1.18897 1.85543 1.53851 1.22588 0.81873 0.96910 1.11330 1.22240 1.01778 0.90000 1.02082 1.21967 0.90165 1.02045 1.06329 1.21458 0.96162 0.80877 1.04050 1.18014 0.87537 0.94833 1.04140 1.21507 0.93756 0.99787 0.98867 1.21370 0.96050 0.96822 0.99665 1.21732 1.00727 0.92897 0.97269 1.21465 0.91666 1.01656 0.98622 1.21379 0.99095 0.92134 0.98938 1.84214 1.25232 1.28815 1.68172 0.90900 0.88441 0.84972 0.72977 0.81713 0.78723 0.86713 0.83705 0.82619 0.82126 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.71 8.72 21.68 0.19 -46.52 16 2 C 0.00 0.04 5.21 84.96 0.44 0.48 16 3 Si 1.01 42.21 29.56 68.60 2.03 44.23 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.34 -19.52 9.32 84.11 0.78 -18.74 16 8 H 0.09 5.45 7.36 -2.91 -0.02 5.43 16 9 N -0.42 -23.37 2.17 -644.48 -1.40 -24.77 16 10 C 0.15 7.00 4.78 85.63 0.41 7.41 16 11 C 0.52 24.39 4.71 71.24 0.34 24.73 16 12 O -0.56 -31.08 16.81 21.95 0.37 -30.71 16 13 O -0.51 -18.81 12.80 -51.38 -0.66 -19.47 16 14 C 0.51 28.48 7.35 86.35 0.64 29.11 16 15 O -0.60 -36.44 16.56 -4.60 -0.08 -36.52 16 16 C -0.07 -3.45 6.66 24.31 0.16 -3.29 16 17 C -0.14 -5.32 10.66 22.57 0.24 -5.08 16 18 C -0.19 -5.62 10.21 22.26 0.23 -5.39 16 19 C 0.03 0.88 7.02 24.38 0.17 1.05 16 20 C -0.05 -1.21 5.87 -20.10 -0.12 -1.33 16 21 C -0.12 -3.15 9.72 22.54 0.22 -2.93 16 22 C -0.12 -2.30 10.03 22.23 0.22 -2.07 16 23 C -0.11 -1.56 10.04 22.34 0.22 -1.34 16 24 C -0.12 -1.67 10.03 22.23 0.22 -1.44 16 25 C -0.10 -1.88 9.56 22.54 0.22 -1.66 16 26 O -0.17 -6.93 6.04 -10.01 -0.06 -6.99 16 27 H 0.28 13.69 8.31 -92.71 -0.77 12.91 16 28 H 0.10 4.21 6.04 -2.39 -0.01 4.20 16 29 H 0.13 6.41 6.29 -2.38 -0.02 6.39 16 30 H 0.41 11.57 9.10 -74.06 -0.67 10.90 16 31 H 0.17 5.83 8.06 -2.91 -0.02 5.81 16 32 H 0.20 3.92 7.23 -2.91 -0.02 3.90 16 33 H 0.11 3.38 7.27 -2.91 -0.02 3.36 16 34 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.15 2.14 6.96 -2.91 -0.02 2.12 16 Total: -1.00 -77.75 325.95 5.25 -72.49 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.47 Total: 28.77 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 4.39 Total: 19.49 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -1.21 Total: -71.29 kcal Atomic # 8 Polarization: -93.27 SS G_CDS: -0.43 Total: -93.70 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -77.75 5.25 -72.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.118 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds