Wall clock time and date at job start Tue Mar 31 2020 11:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86795 * 120.00187 * 2 1 4 4 H 1.48501 * 109.46865 * 239.99677 * 3 2 1 5 5 H 1.48503 * 109.47442 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47401 * 119.99786 * 3 2 1 7 7 C 1.39076 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99726 * 170.22591 * 7 2 1 9 9 N 1.36800 * 120.00193 * 350.23243 * 7 2 1 10 10 C 1.46502 * 120.00061 * 340.55225 * 9 7 2 11 11 C 1.50704 * 109.46830 * 97.05993 * 10 9 7 12 12 O 1.20821 * 120.00105 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99698 * 180.02562 * 11 10 9 14 14 C 1.34783 * 119.99794 * 160.55728 * 9 7 2 15 15 O 1.21648 * 120.00352 * 4.18529 * 14 9 7 16 16 C 1.47348 * 119.99586 * 184.18711 * 14 9 7 17 17 C 1.38836 * 120.37994 * 293.88051 * 16 14 9 18 18 C 1.38852 * 120.61853 * 179.74425 * 17 16 14 19 19 C 1.36318 * 121.17576 * 0.24948 * 18 17 16 20 20 C 1.40606 * 120.14640 * 359.97438 * 19 18 17 21 21 C 1.40588 * 121.07607 * 180.02562 * 20 19 18 22 22 C 1.36147 * 119.91131 * 179.97438 * 21 20 19 23 23 C 1.39184 * 121.02146 * 0.02562 * 22 21 20 24 24 C 1.37770 * 120.71847 * 359.97381 * 23 22 21 25 25 O 1.35836 * 120.26832 * 180.02562 * 24 23 22 26 26 C 1.40595 * 119.47104 * 0.04385 * 24 23 22 27 27 H 0.97004 * 119.99749 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47211 * 217.05684 * 10 9 7 29 29 H 1.09002 * 109.46794 * 337.05837 * 10 9 7 30 30 H 0.96696 * 116.99450 * 179.97438 * 13 11 10 31 31 H 1.08003 * 119.69421 * 0.02562 * 17 16 14 32 32 H 1.08003 * 119.41532 * 180.22797 * 18 17 16 33 33 H 1.07998 * 119.92875 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.04477 * 359.96203 * 21 20 19 35 35 H 1.08002 * 119.48948 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.63603 * 180.02562 * 23 22 21 37 37 H 0.96706 * 114.00458 * 84.84122 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6962 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1013 1.6964 1.2125 7 6 2.0088 -1.2045 0.0005 8 1 3.0771 -1.2114 -0.1583 9 7 1.3396 -2.3805 0.2021 10 6 0.0149 -2.3716 0.8275 11 6 -1.0458 -2.4194 -0.2421 12 8 -0.7278 -2.4566 -1.4071 13 8 -2.3439 -2.4197 0.0996 14 6 1.8992 -3.5473 -0.1747 15 8 3.0297 -3.5629 -0.6237 16 6 1.1416 -4.8042 -0.0427 17 6 0.8038 -5.2919 1.2125 18 6 0.0854 -6.4730 1.3425 19 6 -0.3028 -7.1870 0.2480 20 6 0.0215 -6.7330 -1.0427 21 6 -0.3693 -7.4535 -2.1849 22 6 -0.0430 -6.9918 -3.4234 23 6 0.6764 -5.8109 -3.5822 24 6 1.0766 -5.0779 -2.4864 25 8 1.7779 -3.9264 -2.6519 26 6 0.7536 -5.5314 -1.1954 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0857 -3.2404 1.4779 29 1 -0.1030 -1.4616 1.4158 30 1 -2.9875 -2.4508 -0.6213 31 1 1.0986 -4.7452 2.0960 32 1 -0.1702 -6.8327 2.3282 33 1 -0.8606 -8.1033 0.3724 34 1 -0.9275 -8.3721 -2.0800 35 1 -0.3464 -7.5509 -4.2962 36 1 0.9228 -5.4650 -4.5752 37 1 1.2253 -3.1482 -2.8077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:03 Heat of formation + Delta-G solvation = -98.546419 kcal Electronic energy + Delta-G solvation = -27506.977677 eV Core-core repulsion = 23601.429953 eV Total energy + Delta-G solvation = -3905.547724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48478 -39.22675 -37.96998 -37.07275 -35.42405 -35.16211 -34.48162 -32.00053 -31.19307 -30.11843 -28.43457 -27.66331 -25.19712 -23.35388 -22.78590 -22.01012 -21.05891 -19.39600 -17.76757 -17.35861 -17.01063 -16.93688 -16.52141 -16.06179 -15.59087 -15.36159 -14.65333 -14.47642 -14.39679 -14.23631 -13.90274 -13.52938 -13.05848 -12.89806 -12.74962 -12.45939 -11.95413 -11.94032 -11.73638 -11.43022 -11.25286 -11.07684 -11.01296 -10.83440 -10.50568 -10.43973 -10.39337 -9.85840 -9.64871 -9.35542 -9.07634 -8.53845 -8.40258 -7.93478 -7.36319 -6.46323 -3.97089 0.70015 1.25911 2.20947 3.11722 3.18563 3.21117 3.24736 3.44295 3.65686 4.04803 4.17832 4.34229 4.67074 4.70597 4.91901 4.98865 5.13578 5.22843 5.30920 5.35685 5.51020 5.67964 5.69963 5.91150 5.94443 6.17773 6.31382 6.37654 6.42469 6.45949 6.61149 6.67815 6.73074 6.89183 6.98858 7.18994 7.45024 7.48004 7.94536 8.34395 8.35002 8.98594 9.05273 9.24570 9.82112 10.59727 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.005818 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.627152 B = 4811.443054 C = 5068.689197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.293 4.293 8 H 0.108 0.892 9 N -0.430 5.430 10 C 0.139 3.861 11 C 0.500 3.500 12 O -0.519 6.519 13 O -0.532 6.532 14 C 0.507 3.493 15 O -0.542 6.542 16 C -0.061 4.061 17 C -0.121 4.121 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.034 4.034 21 C -0.137 4.137 22 C -0.092 4.092 23 C -0.175 4.175 24 C 0.164 3.836 25 O -0.469 6.469 26 C -0.054 4.054 27 H 0.272 0.728 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.390 0.610 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 -10.034 1.101 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.763 3.237 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.420 4.420 8 H 0.125 0.875 9 N -0.150 5.150 10 C 0.013 3.987 11 C 0.341 3.659 12 O -0.405 6.405 13 O -0.342 6.342 14 C 0.296 3.704 15 O -0.422 6.422 16 C -0.064 4.064 17 C -0.140 4.140 18 C -0.123 4.123 19 C -0.137 4.137 20 C -0.034 4.034 21 C -0.155 4.155 22 C -0.110 4.110 23 C -0.194 4.194 24 C 0.118 3.882 25 O -0.281 6.281 26 C -0.055 4.055 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.247 0.753 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.430 -10.181 0.943 11.577 hybrid contribution -0.761 1.261 -0.699 1.630 sum -6.191 -8.920 0.244 10.860 Atomic orbital electron populations 1.69644 1.05987 1.27993 1.49879 1.25284 0.95552 0.99900 0.96672 0.85822 0.78723 0.80013 0.79132 1.19831 1.21015 1.19847 1.19704 0.93783 0.81707 1.46791 0.87482 1.43270 1.13592 1.05538 1.52630 1.20963 0.80907 1.04633 0.92204 1.23832 0.81562 0.69649 0.90858 1.90462 1.82168 1.46431 1.21473 1.84536 1.18527 1.86885 1.44254 1.17688 0.87732 0.83009 0.82010 1.90683 1.18690 1.86027 1.46831 1.20401 0.96747 0.96400 0.92886 1.21270 0.99270 0.96927 0.96515 1.20717 0.97927 0.94839 0.98781 1.20969 1.01213 1.00158 0.91386 1.17894 0.97589 0.93770 0.94151 1.20844 1.02669 1.00254 0.91776 1.20599 0.97573 0.95574 0.97301 1.21360 1.01877 0.97509 0.98654 1.18524 0.89923 0.88982 0.90797 1.84918 1.33900 1.15922 1.93354 1.18247 0.99059 0.95387 0.92845 0.91744 0.90769 0.84194 0.75345 0.85377 0.85740 0.85675 0.85783 0.86079 0.85677 0.74156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.34 8.93 55.50 0.50 -21.84 16 2 C 0.03 0.68 5.14 -17.45 -0.09 0.59 16 3 Si 0.94 20.17 29.56 -169.99 -5.03 15.14 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.29 -7.73 9.38 -15.02 -0.14 -7.87 16 8 H 0.11 2.98 7.32 -52.48 -0.38 2.60 16 9 N -0.43 -10.55 2.19 -117.35 -0.26 -10.81 16 10 C 0.14 3.02 4.95 -5.19 -0.03 2.99 16 11 C 0.50 10.84 6.22 36.01 0.22 11.06 16 12 O -0.52 -12.45 16.00 -18.75 -0.30 -12.75 16 13 O -0.53 -9.60 13.42 -39.26 -0.53 -10.13 16 14 C 0.51 12.51 4.99 -12.55 -0.06 12.45 16 15 O -0.54 -15.29 15.00 -17.84 -0.27 -15.55 16 16 C -0.06 -1.28 4.58 -104.65 -0.48 -1.76 16 17 C -0.12 -2.08 7.84 -39.13 -0.31 -2.39 16 18 C -0.10 -1.46 9.92 -40.05 -0.40 -1.86 16 19 C -0.12 -1.66 9.75 -39.38 -0.38 -2.04 16 20 C -0.03 -0.56 5.74 -106.86 -0.61 -1.18 16 21 C -0.14 -1.93 9.75 -39.45 -0.38 -2.31 16 22 C -0.09 -1.30 9.94 -39.98 -0.40 -1.70 16 23 C -0.18 -2.97 9.95 -39.40 -0.39 -3.36 16 24 C 0.16 3.37 6.68 -38.86 -0.26 3.11 16 25 O -0.47 -10.87 9.54 -42.30 -0.40 -11.27 16 26 C -0.05 -1.09 5.77 -106.43 -0.61 -1.71 16 27 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.07 1.39 5.22 -51.93 -0.27 1.12 16 29 H 0.14 3.17 6.10 -51.93 -0.32 2.85 16 30 H 0.39 5.45 9.10 45.56 0.41 5.86 16 31 H 0.13 2.00 7.56 -52.48 -0.40 1.61 16 32 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 33 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.40 9.20 8.13 45.56 0.37 9.57 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -32.55 318.58 -7.64 -40.19 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -1.83 Total: 18.21 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -4.32 Total: 4.02 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.24 Total: -32.65 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -1.50 Total: -49.71 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.55 -7.64 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.357 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds