Wall clock time and date at job start Tue Mar 31 2020 11:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86795 * 120.00187 * 2 1 4 4 H 1.48501 * 109.46865 * 239.99677 * 3 2 1 5 5 H 1.48503 * 109.47442 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47401 * 119.99786 * 3 2 1 7 7 C 1.39076 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99726 * 170.22591 * 7 2 1 9 9 N 1.36800 * 120.00193 * 350.23243 * 7 2 1 10 10 C 1.46502 * 120.00061 * 340.55225 * 9 7 2 11 11 C 1.50704 * 109.46830 * 97.05993 * 10 9 7 12 12 O 1.20821 * 120.00105 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99698 * 180.02562 * 11 10 9 14 14 C 1.34783 * 119.99794 * 160.55728 * 9 7 2 15 15 O 1.21648 * 120.00352 * 4.18529 * 14 9 7 16 16 C 1.47348 * 119.99586 * 184.18711 * 14 9 7 17 17 C 1.38836 * 120.37994 * 293.88051 * 16 14 9 18 18 C 1.38852 * 120.61853 * 179.74425 * 17 16 14 19 19 C 1.36318 * 121.17576 * 0.24948 * 18 17 16 20 20 C 1.40606 * 120.14640 * 359.97438 * 19 18 17 21 21 C 1.40588 * 121.07607 * 180.02562 * 20 19 18 22 22 C 1.36147 * 119.91131 * 179.97438 * 21 20 19 23 23 C 1.39184 * 121.02146 * 0.02562 * 22 21 20 24 24 C 1.37770 * 120.71847 * 359.97381 * 23 22 21 25 25 O 1.35836 * 120.26832 * 180.02562 * 24 23 22 26 26 C 1.40595 * 119.47104 * 0.04385 * 24 23 22 27 27 H 0.97004 * 119.99749 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47211 * 217.05684 * 10 9 7 29 29 H 1.09002 * 109.46794 * 337.05837 * 10 9 7 30 30 H 0.96696 * 116.99450 * 179.97438 * 13 11 10 31 31 H 1.08003 * 119.69421 * 0.02562 * 17 16 14 32 32 H 1.08003 * 119.41532 * 180.22797 * 18 17 16 33 33 H 1.07998 * 119.92875 * 179.97438 * 19 18 17 34 34 H 1.08001 * 120.04477 * 359.96203 * 21 20 19 35 35 H 1.08002 * 119.48948 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.63603 * 180.02562 * 23 22 21 37 37 H 0.96706 * 114.00458 * 84.84122 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6962 -1.2125 5 1 1.2826 2.7465 -0.0006 6 1 3.1013 1.6964 1.2125 7 6 2.0088 -1.2045 0.0005 8 1 3.0771 -1.2114 -0.1583 9 7 1.3396 -2.3805 0.2021 10 6 0.0149 -2.3716 0.8275 11 6 -1.0458 -2.4194 -0.2421 12 8 -0.7278 -2.4566 -1.4071 13 8 -2.3439 -2.4197 0.0996 14 6 1.8992 -3.5473 -0.1747 15 8 3.0297 -3.5629 -0.6237 16 6 1.1416 -4.8042 -0.0427 17 6 0.8038 -5.2919 1.2125 18 6 0.0854 -6.4730 1.3425 19 6 -0.3028 -7.1870 0.2480 20 6 0.0215 -6.7330 -1.0427 21 6 -0.3693 -7.4535 -2.1849 22 6 -0.0430 -6.9918 -3.4234 23 6 0.6764 -5.8109 -3.5822 24 6 1.0766 -5.0779 -2.4864 25 8 1.7779 -3.9264 -2.6519 26 6 0.7536 -5.5314 -1.1954 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0857 -3.2404 1.4779 29 1 -0.1030 -1.4616 1.4158 30 1 -2.9875 -2.4508 -0.6213 31 1 1.0986 -4.7452 2.0960 32 1 -0.1702 -6.8327 2.3282 33 1 -0.8606 -8.1033 0.3724 34 1 -0.9275 -8.3721 -2.0800 35 1 -0.3464 -7.5509 -4.2962 36 1 0.9228 -5.4650 -4.5752 37 1 1.2253 -3.1482 -2.8077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:02 Heat of formation + Delta-G solvation = -120.610525 kcal Electronic energy + Delta-G solvation = -27507.934449 eV Core-core repulsion = 23601.429953 eV Total energy + Delta-G solvation = -3906.504495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91205 -40.83328 -39.68140 -38.50725 -37.00734 -36.64517 -36.29612 -33.79123 -32.66996 -31.34603 -29.81797 -29.37764 -26.99210 -24.75378 -24.01494 -23.46295 -22.70585 -20.99942 -19.25875 -19.02442 -18.66289 -18.39512 -18.12446 -17.47254 -17.22411 -16.90459 -16.22210 -16.20813 -15.95285 -15.64118 -15.44754 -14.93966 -14.52966 -14.51431 -14.14103 -13.80961 -13.59423 -13.56423 -13.23054 -13.03221 -12.71394 -12.57427 -12.44529 -12.33095 -12.19344 -12.12623 -12.04276 -11.53453 -11.23558 -10.95555 -10.72207 -10.37127 -9.84816 -9.62393 -8.64383 -8.39098 -5.97575 -0.56956 0.02951 0.90284 1.39127 1.41233 1.51184 1.71943 1.91280 1.99316 2.28853 2.54791 2.95158 3.02388 3.11978 3.36749 3.73180 3.90227 3.91917 4.03380 4.25868 4.31123 4.33679 4.44541 4.56426 4.66032 4.82412 4.91446 4.98348 5.07996 5.13760 5.27686 5.40700 5.43208 5.52893 5.62991 5.78148 5.93233 6.01755 6.04786 6.43178 6.74125 7.11651 7.29028 7.45499 7.96286 8.64284 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.005818 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.627152 B = 4811.443054 C = 5068.689197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.001 3.999 3 Si 0.994 3.006 4 H -0.285 1.285 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.328 4.328 8 H 0.076 0.924 9 N -0.438 5.438 10 C 0.141 3.859 11 C 0.503 3.497 12 O -0.547 6.547 13 O -0.519 6.519 14 C 0.509 3.491 15 O -0.599 6.599 16 C -0.112 4.112 17 C -0.111 4.111 18 C -0.109 4.109 19 C -0.092 4.092 20 C -0.057 4.057 21 C -0.112 4.112 22 C -0.101 4.101 23 C -0.164 4.164 24 C 0.097 3.903 25 O -0.492 6.492 26 C -0.074 4.074 27 H 0.274 0.726 28 H 0.102 0.898 29 H 0.129 0.871 30 H 0.411 0.589 31 H 0.135 0.865 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.132 0.868 37 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -13.128 2.115 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.200 4.200 3 Si 0.818 3.182 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.455 4.455 8 H 0.094 0.906 9 N -0.157 5.157 10 C 0.016 3.984 11 C 0.345 3.655 12 O -0.436 6.436 13 O -0.331 6.331 14 C 0.299 3.701 15 O -0.483 6.483 16 C -0.116 4.116 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.058 4.058 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.183 4.183 24 C 0.052 3.948 25 O -0.302 6.302 26 C -0.075 4.075 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.147 0.853 30 H 0.270 0.730 31 H 0.153 0.847 32 H 0.189 0.811 33 H 0.195 0.805 34 H 0.192 0.808 35 H 0.181 0.819 36 H 0.150 0.850 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.527 -13.297 1.986 15.920 hybrid contribution 0.050 2.031 -1.030 2.277 sum -8.477 -11.266 0.957 14.132 Atomic orbital electron populations 1.69730 1.06479 1.28597 1.49178 1.25921 0.96419 1.01947 0.95666 0.84978 0.77748 0.76751 0.78705 1.21092 1.19575 1.18939 1.19556 0.93046 0.83553 1.49362 0.90565 1.43315 1.14511 1.05099 1.52820 1.20977 0.79921 1.05206 0.92318 1.23709 0.82509 0.69044 0.90204 1.90473 1.82854 1.47696 1.22555 1.84458 1.17457 1.86206 1.44980 1.18297 0.87153 0.84319 0.80320 1.90604 1.21327 1.87202 1.49212 1.20127 1.00353 0.95918 0.95169 1.21572 0.98220 0.98044 0.95107 1.21163 0.96906 0.93271 1.01297 1.21591 0.98798 1.00849 0.89734 1.18370 0.97710 0.92943 0.96746 1.21443 1.00356 1.00682 0.90496 1.21046 0.96843 0.94574 0.99400 1.21670 1.00588 0.98044 0.97986 1.19008 0.93903 0.89153 0.92742 1.84949 1.34920 1.16672 1.93702 1.18514 0.99952 0.96922 0.92089 0.91536 0.88002 0.85311 0.72995 0.84738 0.81117 0.80525 0.80762 0.81856 0.85020 0.76042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.97 8.93 21.69 0.19 -45.78 16 2 C 0.00 0.04 5.14 84.97 0.44 0.48 16 3 Si 0.99 42.73 29.56 68.60 2.03 44.76 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.33 -18.58 9.38 84.12 0.79 -17.80 16 8 H 0.08 4.68 7.32 -2.91 -0.02 4.65 16 9 N -0.44 -22.89 2.19 -643.41 -1.41 -24.30 16 10 C 0.14 6.30 4.95 85.63 0.42 6.72 16 11 C 0.50 22.09 6.22 71.24 0.44 22.54 16 12 O -0.55 -27.33 16.00 21.98 0.35 -26.98 16 13 O -0.52 -18.10 13.42 -51.43 -0.69 -18.79 16 14 C 0.51 26.97 4.99 86.64 0.43 27.40 16 15 O -0.60 -37.07 15.00 17.87 0.27 -36.80 16 16 C -0.11 -4.87 4.58 -19.88 -0.09 -4.96 16 17 C -0.11 -3.68 7.84 22.56 0.18 -3.50 16 18 C -0.11 -2.56 9.92 21.97 0.22 -2.34 16 19 C -0.09 -2.05 9.75 22.40 0.22 -1.83 16 20 C -0.06 -1.72 5.74 -21.32 -0.12 -1.84 16 21 C -0.11 -2.59 9.75 22.36 0.22 -2.37 16 22 C -0.10 -2.50 9.94 22.01 0.22 -2.28 16 23 C -0.16 -5.57 9.95 22.39 0.22 -5.35 16 24 C 0.10 4.20 6.68 22.73 0.15 4.35 16 25 O -0.49 -25.27 9.54 -69.65 -0.66 -25.93 16 26 C -0.07 -3.00 5.77 -21.04 -0.12 -3.12 16 27 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 28 H 0.10 3.85 5.22 -2.39 -0.01 3.83 16 29 H 0.13 5.99 6.10 -2.39 -0.01 5.97 16 30 H 0.41 10.77 9.10 -74.06 -0.67 10.09 16 31 H 0.13 4.11 7.56 -2.91 -0.02 4.09 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 34 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.38 20.05 8.13 -74.05 -0.60 19.44 16 Total: -1.00 -79.66 318.58 3.58 -76.08 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -0.11 Total: 41.63 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 3.61 Total: 16.09 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.21 Total: -70.07 kcal Atomic # 8 Polarization: -107.76 SS G_CDS: -0.73 Total: -108.50 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -79.66 3.58 -76.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.526 kcal (2) G-P(sol) polarization free energy of solvation -79.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds