Wall clock time and date at job start Tue Mar 31 2020 11:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47163 * 240.00189 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47268 * 120.00272 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99446 * 197.83802 * 7 2 1 9 9 C 1.41391 * 120.00394 * 17.83971 * 7 2 1 10 10 C 1.40709 * 120.24881 * 204.37955 * 9 7 2 11 11 C 1.37613 * 119.74954 * 180.29949 * 10 9 7 12 12 C 1.38640 * 120.24543 * 359.42165 * 11 10 9 13 13 C 1.50697 * 119.74952 * 180.30058 * 12 11 10 14 14 O 1.45192 * 109.47422 * 270.30319 * 13 12 11 15 15 C 1.34770 * 116.99959 * 180.02562 * 14 13 12 16 16 O 1.21525 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.47260 * 119.99996 * 179.97438 * 15 14 13 18 18 C 1.38330 * 126.46201 * 0.02562 * 17 15 14 19 19 N 1.34198 * 108.40105 * 180.02562 * 18 17 15 20 20 H 0.96998 * 125.38420 * 179.97438 * 19 18 17 21 21 C 1.37842 * 109.23031 * 359.97438 * 19 18 17 22 22 C 1.46636 * 125.85232 * 180.02562 * 21 19 18 23 23 O 1.21599 * 120.00529 * 179.97438 * 22 21 19 24 24 O 1.34871 * 119.99899 * 359.97437 * 22 21 19 25 25 C 1.36424 * 108.30101 * 359.72872 * 21 19 18 26 26 C 1.38637 * 120.49973 * 0.60778 * 12 11 10 27 27 C 1.37615 * 120.24590 * 359.67285 * 26 12 11 28 28 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.12610 * 0.02845 * 10 9 7 30 30 H 1.07998 * 119.88111 * 179.72526 * 11 10 9 31 31 H 1.09008 * 109.47282 * 30.30451 * 13 12 11 32 32 H 1.09004 * 109.47165 * 150.29782 * 13 12 11 33 33 H 1.08000 * 125.79755 * 0.03477 * 18 17 15 34 34 H 0.96702 * 116.99998 * 179.97438 * 24 22 21 35 35 H 1.08000 * 126.50557 * 180.29990 * 25 21 19 36 36 H 1.08003 * 119.87139 * 179.69780 * 26 12 11 37 37 H 1.08004 * 120.12443 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0491 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0824 11 6 1.1833 -4.8069 -0.2946 12 6 0.0659 -4.7502 -1.1133 13 6 -0.6332 -6.0237 -1.5137 14 8 -0.0490 -6.5309 -2.7424 15 6 -0.5648 -7.6724 -3.2395 16 8 -1.4777 -8.2289 -2.6617 17 6 -0.0224 -8.2453 -4.4829 18 6 1.0091 -7.7272 -5.2452 19 7 1.2062 -8.5366 -6.2973 20 1 1.8713 -8.4044 -6.9909 21 6 0.3141 -9.5856 -6.2365 22 6 0.2118 -10.6833 -7.2034 23 8 -0.6181 -11.5578 -7.0451 24 8 1.0382 -10.7228 -8.2686 25 6 -0.4530 -9.4314 -5.1190 26 6 -0.4095 -3.5311 -1.5715 27 6 0.2208 -2.3619 -1.2119 28 1 -0.4850 0.8400 0.0004 29 1 2.6932 -3.6961 0.7243 30 1 1.5478 -5.7624 0.0526 31 1 -0.5180 -6.7655 -0.7233 32 1 -1.6929 -5.8225 -1.6713 33 1 1.5620 -6.8247 -5.0301 34 1 0.9333 -11.4660 -8.8783 35 1 -1.2416 -10.0894 -4.7851 36 1 -1.2779 -3.4991 -2.2129 37 1 -0.1514 -1.4132 -1.5697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:33 Heat of formation + Delta-G solvation = -119.782002 kcal Electronic energy + Delta-G solvation = -23841.991699 eV Core-core repulsion = 19935.523131 eV Total energy + Delta-G solvation = -3906.468568 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93418 -40.11081 -39.51593 -37.64317 -36.52672 -35.89475 -33.86959 -31.87998 -30.85330 -30.20076 -29.37045 -27.25945 -24.88342 -23.91437 -23.05759 -21.09112 -20.85111 -20.26518 -20.02065 -19.02453 -18.12078 -17.40024 -16.99299 -16.27693 -15.90770 -15.83613 -15.75412 -15.30858 -14.44943 -14.30540 -13.94760 -13.77313 -13.69704 -13.63115 -12.93227 -12.69207 -12.34457 -12.30163 -12.04575 -12.03213 -11.54744 -11.26234 -11.23538 -11.15314 -10.66357 -10.61580 -10.27501 -10.10253 -9.70378 -9.55656 -9.46734 -9.22208 -8.85667 -7.57159 -7.46511 -6.88004 -4.47493 0.82057 1.44853 2.37181 2.42644 2.60569 2.71127 2.99053 3.00048 3.01445 3.05020 3.31737 3.49744 3.84293 4.50998 4.57728 4.69418 4.77944 5.12697 5.50393 5.54546 5.63451 5.71719 5.75175 5.97005 6.04760 6.18604 6.24413 6.26161 6.31943 6.80812 6.85681 6.90660 6.96655 7.17902 7.25996 7.42251 7.50887 7.73745 7.94706 8.00879 8.17042 8.18544 8.52892 8.77566 8.85963 10.05963 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.026505 B = 0.002204 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.154103 B =12700.142769 C =13263.399947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.231 4.231 11 C -0.064 4.064 12 C -0.234 4.234 13 C 0.138 3.862 14 O -0.349 6.349 15 C 0.531 3.469 16 O -0.520 6.520 17 C -0.221 4.221 18 C 0.121 3.879 19 N -0.517 5.517 20 H 0.430 0.570 21 C -0.061 4.061 22 C 0.557 3.443 23 O -0.503 6.503 24 O -0.521 6.521 25 C -0.026 4.026 26 C -0.075 4.075 27 C -0.171 4.171 28 H 0.283 0.717 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.199 0.801 34 H 0.419 0.581 35 H 0.164 0.836 36 H 0.089 0.911 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 -12.407 -13.879 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.251 4.251 11 C -0.082 4.082 12 C -0.236 4.236 13 C 0.066 3.934 14 O -0.266 6.266 15 C 0.376 3.624 16 O -0.411 6.411 17 C -0.228 4.228 18 C -0.023 4.023 19 N -0.111 5.111 20 H 0.270 0.730 21 C -0.168 4.168 22 C 0.402 3.598 23 O -0.391 6.391 24 O -0.334 6.334 25 C -0.051 4.051 26 C -0.094 4.094 27 C -0.191 4.191 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.216 0.784 34 H 0.278 0.722 35 H 0.182 0.818 36 H 0.107 0.893 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.836 -12.342 -13.496 18.507 hybrid contribution 0.473 0.374 -0.550 0.816 sum 3.309 -11.968 -14.046 18.748 Atomic orbital electron populations 1.69816 1.07665 1.29635 1.33910 1.25972 0.94766 1.01526 0.92116 0.86327 0.80157 0.79974 0.80083 1.18712 1.20252 1.18906 1.19639 0.98222 0.91270 1.39452 0.90234 1.17681 0.90815 0.92065 0.87868 1.20950 1.04024 0.92760 1.07322 1.20397 0.94275 0.96610 0.96911 1.18680 1.03109 0.91505 1.10259 1.21719 0.96070 0.93797 0.81845 1.86726 1.59993 1.37541 1.42366 1.20081 0.79982 0.79145 0.83225 1.90814 1.28844 1.61317 1.60114 1.18886 1.04476 1.00478 0.99005 1.22939 0.97101 0.95875 0.86414 1.41794 1.28577 1.18954 1.21786 0.73036 1.18777 1.02564 0.94277 1.01228 1.19406 0.77874 0.83540 0.79029 1.90987 1.35608 1.37796 1.74729 1.84546 1.58918 1.53519 1.36461 1.21139 0.97678 0.95418 0.90872 1.20551 0.98122 0.92543 0.98164 1.21301 0.99467 0.96754 1.01528 0.90569 0.88761 0.89255 0.92005 0.91921 0.78398 0.72174 0.81807 0.89271 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.56 10.95 55.55 0.61 -18.95 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.63 9.05 -37.74 -0.34 -11.97 16 8 H 0.08 1.93 7.91 -52.48 -0.41 1.52 16 9 C 0.12 3.04 5.57 -106.83 -0.60 2.45 16 10 C -0.23 -5.47 9.80 -38.88 -0.38 -5.85 16 11 C -0.06 -1.38 9.67 -39.66 -0.38 -1.77 16 12 C -0.23 -5.03 5.54 -104.33 -0.58 -5.60 16 13 C 0.14 2.58 5.59 36.00 0.20 2.78 16 14 O -0.35 -6.10 10.04 -40.68 -0.41 -6.51 16 15 C 0.53 8.68 7.95 34.40 0.27 8.95 16 16 O -0.52 -9.83 16.71 -19.28 -0.32 -10.15 16 17 C -0.22 -2.82 6.13 -105.03 -0.64 -3.47 16 18 C 0.12 1.09 11.76 -16.48 -0.19 0.90 16 19 N -0.52 -3.76 6.01 -9.31 -0.06 -3.81 16 20 H 0.43 1.72 8.96 -40.82 -0.37 1.36 16 21 C -0.06 -0.60 7.02 -82.43 -0.58 -1.18 16 22 C 0.56 5.21 8.31 34.12 0.28 5.50 16 23 O -0.50 -6.28 17.65 -19.34 -0.34 -6.62 16 24 O -0.52 -2.94 13.44 -40.96 -0.55 -3.50 16 25 C -0.03 -0.31 10.37 -39.07 -0.41 -0.72 16 26 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 27 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 29 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.06 1.11 8.08 -51.92 -0.42 0.69 16 32 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.42 0.58 9.11 45.56 0.42 0.99 16 35 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 36 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.12 3.07 6.15 -52.48 -0.32 2.75 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -31.99 342.86 -7.86 -39.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.78 Total: 6.68 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -4.15 Total: -14.97 kcal Atomic # 7 Polarization: -23.31 SS G_CDS: 0.55 Total: -22.76 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.62 Total: -26.78 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.99 -7.86 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.931 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds