Wall clock time and date at job start Tue Mar 31 2020 11:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48498 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47280 * 300.00318 * 3 2 1 6 6 H 1.48506 * 109.47033 * 59.99907 * 3 2 1 7 7 C 1.39941 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00231 * 197.85713 * 7 2 1 9 9 C 1.41397 * 119.99707 * 17.85373 * 7 2 1 10 10 C 1.40715 * 120.24259 * 204.38061 * 9 7 2 11 11 C 1.37619 * 119.74554 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24553 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74552 * 179.97438 * 12 11 10 14 14 O 1.45205 * 109.46977 * 90.00269 * 13 12 11 15 15 C 1.34807 * 116.99559 * 179.97438 * 14 13 12 16 16 O 1.21527 * 120.00832 * 0.02562 * 15 14 13 17 17 C 1.47182 * 119.99686 * 179.97438 * 15 14 13 18 18 C 1.38008 * 125.90112 * 180.02562 * 17 15 14 19 19 C 1.39405 * 107.46432 * 179.74019 * 18 17 15 20 20 C 1.38015 * 107.45923 * 0.41834 * 19 18 17 21 21 C 1.47174 * 125.90247 * 179.84093 * 20 19 18 22 22 O 1.21537 * 120.00096 * 359.69204 * 21 20 19 23 23 O 1.34807 * 120.00144 * 179.68903 * 21 20 19 24 24 N 1.36761 * 108.19927 * 359.57776 * 20 19 18 25 25 H 0.97004 * 125.66326 * 180.28839 * 24 20 19 26 26 C 1.38625 * 120.50231 * 0.25220 * 12 11 10 27 27 C 1.37620 * 120.25024 * 359.44814 * 26 12 11 28 28 H 0.97005 * 120.00555 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.13470 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.88078 * 179.97438 * 11 10 9 31 31 H 1.08994 * 109.47480 * 329.99991 * 13 12 11 32 32 H 1.08997 * 109.46764 * 210.00028 * 13 12 11 33 33 H 1.08000 * 126.27231 * 359.95970 * 18 17 15 34 34 H 1.08001 * 126.27549 * 180.29045 * 19 18 17 35 35 H 0.96707 * 117.00309 * 180.02562 * 23 21 20 36 36 H 1.08000 * 119.88050 * 179.70089 * 26 12 11 37 37 H 1.07994 * 120.13478 * 180.27555 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3521 -2.4068 -0.3765 10 6 1.8259 -3.6498 0.0821 11 6 1.1800 -4.8065 -0.2906 12 6 0.0669 -4.7501 -1.1151 13 6 -0.6315 -6.0237 -1.5167 14 8 -1.6654 -6.3356 -0.5460 15 6 -2.3894 -7.4523 -0.7606 16 8 -2.1625 -8.1464 -1.7320 17 6 -3.4541 -7.8315 0.1822 18 6 -4.2656 -8.9432 0.0820 19 6 -5.1291 -8.9309 1.1764 20 6 -4.8369 -7.8067 1.9217 21 6 -5.5099 -7.3964 3.1646 22 8 -6.4149 -8.0699 3.6165 23 8 -5.1223 -6.2734 3.8019 24 7 -3.8101 -7.1430 1.3090 25 1 -3.4017 -6.3206 1.6219 26 6 -0.4052 -3.5315 -1.5775 27 6 0.2212 -2.3617 -1.2126 28 1 -0.4851 0.8400 0.0004 29 1 2.6932 -3.6962 0.7241 30 1 1.5421 -5.7617 0.0598 31 1 0.0913 -6.8388 -1.5522 32 1 -1.0833 -5.8957 -2.5003 33 1 -4.2348 -9.6884 -0.6991 34 1 -5.8890 -9.6653 1.3990 35 1 -5.5938 -6.0449 4.6147 36 1 -1.2704 -3.4996 -2.2232 37 1 -0.1509 -1.4130 -1.5704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:23 Heat of formation + Delta-G solvation = -120.544810 kcal Electronic energy + Delta-G solvation = -24151.859693 eV Core-core repulsion = 20245.358047 eV Total energy + Delta-G solvation = -3906.501646 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.81925 -40.20254 -39.56554 -37.74555 -36.46048 -36.19474 -33.95902 -31.57984 -31.03409 -30.26357 -29.45217 -27.38888 -25.32645 -23.89229 -22.51052 -21.17694 -20.96068 -20.19759 -20.13246 -19.24743 -18.18823 -17.47631 -17.30468 -16.44115 -16.36452 -15.99869 -15.43436 -14.66958 -14.38324 -14.34079 -14.03672 -13.82956 -13.66900 -13.21219 -13.12163 -12.90000 -12.50788 -12.45826 -12.11216 -11.95169 -11.81893 -11.25715 -11.24255 -11.06947 -10.97637 -10.63613 -10.49179 -10.30649 -9.79099 -9.55661 -9.47965 -9.30423 -8.81408 -7.65493 -7.54436 -6.94730 -4.54596 0.51956 1.66734 2.23621 2.41428 2.73228 2.76561 2.89003 2.92911 2.98017 2.98308 3.03256 3.25104 3.79709 4.42140 4.66880 4.82629 4.87786 5.07902 5.46999 5.52168 5.55849 5.58045 5.74422 5.95084 6.04636 6.15774 6.16627 6.22887 6.39070 6.58761 6.79374 6.87845 6.89730 7.09653 7.17921 7.43286 7.48520 7.64585 7.81857 7.88068 7.92014 8.11043 8.45974 8.70618 8.78300 9.98833 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.002801 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.886699 B = 9995.302244 C =11389.205033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.062 4.062 12 C -0.241 4.241 13 C 0.139 3.861 14 O -0.352 6.352 15 C 0.525 3.475 16 O -0.498 6.498 17 C 0.023 3.977 18 C -0.124 4.124 19 C -0.112 4.112 20 C -0.006 4.006 21 C 0.555 3.445 22 O -0.502 6.502 23 O -0.514 6.514 24 N -0.492 5.492 25 H 0.437 0.563 26 C -0.075 4.075 27 C -0.171 4.171 28 H 0.283 0.717 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.421 0.579 36 H 0.089 0.911 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.358 -9.676 3.401 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.242 4.242 13 C 0.067 3.933 14 O -0.269 6.269 15 C 0.368 3.632 16 O -0.386 6.386 17 C -0.095 4.095 18 C -0.149 4.149 19 C -0.138 4.138 20 C -0.122 4.122 21 C 0.399 3.601 22 O -0.389 6.389 23 O -0.327 6.327 24 N -0.089 5.089 25 H 0.278 0.722 26 C -0.093 4.093 27 C -0.190 4.190 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.281 0.719 36 H 0.107 0.893 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.403 -9.790 2.943 13.233 hybrid contribution 0.227 1.362 0.698 1.547 sum -8.176 -8.428 3.641 12.294 Atomic orbital electron populations 1.69825 1.07712 1.29538 1.33695 1.25984 0.94772 1.01624 0.92065 0.86226 0.81044 0.80597 0.78731 1.18242 1.19531 1.19830 1.19732 0.98283 0.91225 1.39001 0.90058 1.17702 0.90757 0.92100 0.87830 1.20971 1.04155 0.92662 1.07206 1.20401 0.95056 0.96674 0.95943 1.18648 1.01419 0.91843 1.12285 1.21826 0.86091 0.96170 0.89185 1.86788 1.46388 1.40100 1.53592 1.19963 0.80049 0.79880 0.83272 1.90865 1.66925 1.52456 1.28339 1.19905 1.01225 0.97429 0.90925 1.21310 0.95895 0.97523 1.00214 1.21289 1.01545 0.96725 0.94216 1.19455 0.97527 0.98660 0.96567 1.19578 0.80160 0.78101 0.82251 1.90951 1.28754 1.53728 1.65483 1.84592 1.63205 1.42231 1.42659 1.42098 1.26062 1.22156 1.18616 0.72208 1.20542 0.97685 0.92447 0.98649 1.21298 0.99701 0.96680 1.01328 0.90609 0.88677 0.89260 0.91686 0.91628 0.81897 0.82008 0.71904 0.89288 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.20 10.95 55.55 0.61 -18.59 16 2 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 3 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.45 -11.42 9.05 -37.74 -0.34 -11.76 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.12 3.02 5.57 -106.82 -0.60 2.42 16 10 C -0.23 -5.38 9.80 -38.87 -0.38 -5.76 16 11 C -0.06 -1.33 9.67 -39.66 -0.38 -1.72 16 12 C -0.24 -5.04 5.54 -104.33 -0.58 -5.62 16 13 C 0.14 2.48 5.59 36.01 0.20 2.68 16 14 O -0.35 -6.04 10.22 -40.79 -0.42 -6.46 16 15 C 0.52 8.17 7.95 34.36 0.27 8.44 16 16 O -0.50 -8.56 16.67 -19.28 -0.32 -8.88 16 17 C 0.02 0.30 7.07 -82.12 -0.58 -0.28 16 18 C -0.12 -1.37 10.60 -39.23 -0.42 -1.78 16 19 C -0.11 -1.14 10.60 -39.23 -0.42 -1.56 16 20 C -0.01 -0.06 7.07 -82.12 -0.58 -0.65 16 21 C 0.56 5.85 8.33 34.36 0.29 6.14 16 22 O -0.50 -6.31 17.66 -19.29 -0.34 -6.65 16 23 O -0.51 -4.19 13.44 -40.79 -0.55 -4.74 16 24 N -0.49 -5.70 6.11 -5.92 -0.04 -5.74 16 25 H 0.44 4.79 8.96 -40.82 -0.37 4.42 16 26 C -0.07 -1.66 9.67 -39.66 -0.38 -2.05 16 27 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 28 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 29 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 32 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.42 1.46 9.11 45.56 0.42 1.87 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -29.61 343.20 -8.01 -37.62 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.78 Total: 10.01 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -4.32 Total: -14.37 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.57 Total: -24.32 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -1.63 Total: -26.73 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.61 -8.01 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.922 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds