Wall clock time and date at job start Tue Mar 31 2020 11:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48498 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47280 * 300.00318 * 3 2 1 6 6 H 1.48506 * 109.47033 * 59.99907 * 3 2 1 7 7 C 1.39941 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00231 * 197.85713 * 7 2 1 9 9 C 1.41397 * 119.99707 * 17.85373 * 7 2 1 10 10 C 1.40715 * 120.24259 * 204.38061 * 9 7 2 11 11 C 1.37619 * 119.74554 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24553 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.74552 * 179.97438 * 12 11 10 14 14 O 1.45205 * 109.46977 * 90.00269 * 13 12 11 15 15 C 1.34807 * 116.99559 * 179.97438 * 14 13 12 16 16 O 1.21527 * 120.00832 * 0.02562 * 15 14 13 17 17 C 1.47182 * 119.99686 * 179.97438 * 15 14 13 18 18 C 1.38008 * 125.90112 * 180.02562 * 17 15 14 19 19 C 1.39405 * 107.46432 * 179.74019 * 18 17 15 20 20 C 1.38015 * 107.45923 * 0.41834 * 19 18 17 21 21 C 1.47174 * 125.90247 * 179.84093 * 20 19 18 22 22 O 1.21537 * 120.00096 * 359.69204 * 21 20 19 23 23 O 1.34807 * 120.00144 * 179.68903 * 21 20 19 24 24 N 1.36761 * 108.19927 * 359.57776 * 20 19 18 25 25 H 0.97004 * 125.66326 * 180.28839 * 24 20 19 26 26 C 1.38625 * 120.50231 * 0.25220 * 12 11 10 27 27 C 1.37620 * 120.25024 * 359.44814 * 26 12 11 28 28 H 0.97005 * 120.00555 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.13470 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.88078 * 179.97438 * 11 10 9 31 31 H 1.08994 * 109.47480 * 329.99991 * 13 12 11 32 32 H 1.08997 * 109.46764 * 210.00028 * 13 12 11 33 33 H 1.08000 * 126.27231 * 359.95970 * 18 17 15 34 34 H 1.08001 * 126.27549 * 180.29045 * 19 18 17 35 35 H 0.96707 * 117.00309 * 180.02562 * 23 21 20 36 36 H 1.08000 * 119.88050 * 179.70089 * 26 12 11 37 37 H 1.07994 * 120.13478 * 180.27555 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3521 -2.4068 -0.3765 10 6 1.8259 -3.6498 0.0821 11 6 1.1800 -4.8065 -0.2906 12 6 0.0669 -4.7501 -1.1151 13 6 -0.6315 -6.0237 -1.5167 14 8 -1.6654 -6.3356 -0.5460 15 6 -2.3894 -7.4523 -0.7606 16 8 -2.1625 -8.1464 -1.7320 17 6 -3.4541 -7.8315 0.1822 18 6 -4.2656 -8.9432 0.0820 19 6 -5.1291 -8.9309 1.1764 20 6 -4.8369 -7.8067 1.9217 21 6 -5.5099 -7.3964 3.1646 22 8 -6.4149 -8.0699 3.6165 23 8 -5.1223 -6.2734 3.8019 24 7 -3.8101 -7.1430 1.3090 25 1 -3.4017 -6.3206 1.6219 26 6 -0.4052 -3.5315 -1.5775 27 6 0.2212 -2.3617 -1.2126 28 1 -0.4851 0.8400 0.0004 29 1 2.6932 -3.6962 0.7241 30 1 1.5421 -5.7617 0.0598 31 1 0.0913 -6.8388 -1.5522 32 1 -1.0833 -5.8957 -2.5003 33 1 -4.2348 -9.6884 -0.6991 34 1 -5.8890 -9.6653 1.3990 35 1 -5.5938 -6.0449 4.6147 36 1 -1.2704 -3.4996 -2.2232 37 1 -0.1509 -1.4130 -1.5704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:23 Heat of formation + Delta-G solvation = -137.229070 kcal Electronic energy + Delta-G solvation = -24152.583177 eV Core-core repulsion = 20245.358047 eV Total energy + Delta-G solvation = -3907.225130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.73236 -41.28585 -40.57370 -39.46095 -37.56250 -37.23395 -35.70974 -32.74819 -32.35376 -31.35144 -31.20909 -28.99752 -26.49837 -25.34041 -23.56130 -22.96632 -21.95470 -21.78006 -21.10822 -20.21426 -19.28844 -19.06906 -18.39465 -17.68228 -17.57245 -17.14110 -16.90249 -16.10694 -15.69233 -15.61726 -15.26373 -15.02587 -14.81959 -14.45620 -14.07214 -13.95433 -13.92801 -13.89512 -13.85845 -13.54347 -12.87806 -12.72215 -12.72137 -12.63875 -12.20126 -12.08488 -11.88715 -11.74383 -11.49740 -11.30954 -11.06619 -10.32352 -9.73811 -9.45909 -9.35462 -8.70981 -6.41647 -0.42609 0.67626 0.73122 1.09728 1.35050 1.39236 1.52360 1.53604 1.80801 1.85764 1.94915 2.06502 2.18255 2.69287 3.57352 3.75892 3.89574 4.02345 4.05640 4.10728 4.25529 4.46037 4.49039 4.54109 4.63363 4.97359 4.99604 5.10319 5.23628 5.28139 5.31524 5.38151 5.43789 5.55999 5.63384 5.86383 5.98675 6.04205 6.12498 6.30495 6.56742 6.62921 6.81876 6.86956 6.95273 8.25516 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.002801 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.886699 B = 9995.302244 C =11389.205033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.245 4.245 11 C -0.063 4.063 12 C -0.231 4.231 13 C 0.143 3.857 14 O -0.361 6.361 15 C 0.530 3.470 16 O -0.517 6.517 17 C -0.002 4.002 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.006 4.006 21 C 0.563 3.437 22 O -0.523 6.523 23 O -0.511 6.511 24 N -0.492 5.492 25 H 0.438 0.562 26 C -0.079 4.079 27 C -0.194 4.194 28 H 0.291 0.709 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.441 0.559 36 H 0.107 0.893 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 -10.664 3.802 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.520 4.520 8 H 0.097 0.903 9 C 0.086 3.914 10 C -0.265 4.265 11 C -0.082 4.082 12 C -0.233 4.233 13 C 0.071 3.929 14 O -0.278 6.278 15 C 0.375 3.625 16 O -0.406 6.406 17 C -0.119 4.119 18 C -0.136 4.136 19 C -0.134 4.134 20 C -0.123 4.123 21 C 0.407 3.593 22 O -0.413 6.413 23 O -0.326 6.326 24 N -0.090 5.090 25 H 0.279 0.721 26 C -0.097 4.097 27 C -0.213 4.213 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.197 0.803 34 H 0.201 0.799 35 H 0.305 0.695 36 H 0.125 0.875 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.138 -10.778 3.362 14.525 hybrid contribution 0.333 1.504 0.620 1.661 sum -8.805 -9.274 3.982 13.394 Atomic orbital electron populations 1.69867 1.09057 1.30819 1.34397 1.26794 0.95494 1.04639 0.91086 0.85144 0.79471 0.76039 0.79016 1.18103 1.18868 1.18967 1.19956 0.98511 0.92439 1.41104 0.90282 1.18045 0.91541 0.93185 0.88641 1.21176 1.04762 0.92869 1.07672 1.20720 0.94754 0.97275 0.95409 1.18958 1.01037 0.92701 1.10563 1.21680 0.86703 0.95014 0.89523 1.86730 1.46523 1.41221 1.53300 1.20215 0.79959 0.78893 0.83422 1.90852 1.67629 1.52829 1.29314 1.19713 1.01791 0.98826 0.91572 1.21588 0.94794 0.96769 1.00436 1.21591 1.01579 0.96761 0.93496 1.19741 0.97047 0.98753 0.96742 1.19455 0.79570 0.78241 0.82008 1.90949 1.29699 1.54561 1.66061 1.84561 1.63289 1.41050 1.43717 1.42074 1.26255 1.22230 1.18392 0.72142 1.20783 0.97964 0.92336 0.98665 1.21263 1.00572 0.96967 1.02526 0.89870 0.88012 0.86345 0.90237 0.90760 0.80324 0.79867 0.69525 0.87523 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.07 10.95 21.82 0.24 -40.83 16 2 C 0.04 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 36.56 29.59 68.60 2.03 38.59 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.49 -25.58 9.05 23.46 0.21 -25.36 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 9 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 10 C -0.25 -11.58 9.80 22.73 0.22 -11.36 16 11 C -0.06 -2.65 9.67 22.22 0.21 -2.43 16 12 C -0.23 -9.46 5.54 -19.68 -0.11 -9.57 16 13 C 0.14 4.84 5.59 71.24 0.40 5.24 16 14 O -0.36 -11.85 10.22 -57.19 -0.58 -12.43 16 15 C 0.53 15.70 7.95 70.17 0.56 16.26 16 16 O -0.52 -16.95 16.67 19.75 0.33 -16.62 16 17 C 0.00 -0.05 7.07 40.67 0.29 0.24 16 18 C -0.11 -2.16 10.60 22.50 0.24 -1.93 16 19 C -0.11 -1.94 10.60 22.50 0.24 -1.70 16 20 C -0.01 -0.12 7.07 40.67 0.29 0.17 16 21 C 0.56 10.78 8.33 70.17 0.58 11.36 16 22 O -0.52 -12.20 17.66 19.72 0.35 -11.85 16 23 O -0.51 -7.32 13.44 -57.19 -0.77 -8.09 16 24 N -0.49 -10.65 6.11 -172.64 -1.05 -11.70 16 25 H 0.44 9.10 8.96 -92.71 -0.83 8.27 16 26 C -0.08 -3.53 9.67 22.22 0.21 -3.31 16 27 C -0.19 -9.88 8.70 22.73 0.20 -9.68 16 28 H 0.29 13.11 8.30 -92.70 -0.77 12.34 16 29 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 31 H 0.08 2.48 8.08 -2.39 -0.02 2.46 16 32 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 33 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.44 2.12 9.11 -74.05 -0.67 1.44 16 36 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.10 5.51 6.16 -2.91 -0.02 5.50 16 Total: -1.00 -64.05 343.20 4.05 -60.00 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.35 Total: 28.33 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.87 Total: -25.39 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.82 Total: -52.53 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.68 Total: -48.99 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -64.05 4.05 -60.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.230 kcal (2) G-P(sol) polarization free energy of solvation -64.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds