Wall clock time and date at job start Tue Mar 31 2020 11:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47343 * 275.41633 * 3 2 1 5 5 H 1.48501 * 109.47196 * 35.41349 * 3 2 1 6 6 H 1.48499 * 109.47456 * 155.41399 * 3 2 1 7 7 C 1.39935 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00274 * 341.73007 * 7 2 1 9 9 C 1.41438 * 119.99803 * 161.73654 * 7 2 1 10 10 C 1.40791 * 120.17782 * 330.16684 * 9 7 2 11 11 C 1.37709 * 120.04241 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41059 * 359.74825 * 11 10 9 13 13 C 1.39888 * 120.35919 * 0.51021 * 12 11 10 14 14 C 1.47882 * 120.02343 * 179.76554 * 13 12 11 15 15 O 1.21555 * 119.99511 * 179.72604 * 14 13 12 16 16 N 1.34774 * 120.00389 * 359.72559 * 14 13 12 17 17 C 1.46500 * 119.99990 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46999 * 179.97438 * 17 16 14 19 19 C 1.34168 * 125.42678 * 89.99978 * 18 17 16 20 20 C 1.47058 * 105.94746 * 179.97438 * 19 18 17 21 21 C 1.47233 * 127.19807 * 180.02562 * 20 19 18 22 22 O 1.21534 * 120.00247 * 0.02562 * 21 20 19 23 23 O 1.34773 * 119.99707 * 179.97438 * 21 20 19 24 24 C 1.36496 * 105.59612 * 359.97438 * 20 19 18 25 25 O 1.33618 * 108.38858 * 359.77370 * 24 20 19 26 26 C 1.39038 * 119.94556 * 359.49025 * 13 12 11 27 27 H 0.97002 * 119.99799 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.97800 * 0.05250 * 10 9 7 29 29 H 1.07997 * 119.79404 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.82292 * 180.27977 * 12 11 10 31 31 H 0.96999 * 119.99660 * 0.02562 * 16 14 13 32 32 H 1.09003 * 109.46691 * 299.99822 * 17 16 14 33 33 H 1.08998 * 109.47208 * 59.99617 * 17 16 14 34 34 H 1.07992 * 127.02234 * 359.97438 * 19 18 17 35 35 H 0.96699 * 116.99580 * 180.02562 * 23 21 20 36 36 H 1.08008 * 125.80282 * 179.97438 * 24 20 19 37 37 H 1.07995 * 120.19384 * 180.22693 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3755 2.1124 -1.3937 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2119 -0.0005 8 1 1.5087 -2.1238 0.2922 9 6 3.3688 -1.2427 -0.3844 10 6 3.8625 -0.3101 -1.3165 11 6 5.1879 -0.3429 -1.6887 12 6 6.0441 -1.2858 -1.1480 13 6 5.5705 -2.2239 -0.2246 14 6 6.4910 -3.2316 0.3447 15 8 6.0800 -4.0434 1.1508 16 7 7.7854 -3.2501 -0.0302 17 6 8.6970 -4.2489 0.5334 18 6 10.0747 -4.0550 -0.0457 19 6 11.0321 -3.2697 0.4709 20 6 12.1892 -3.3992 -0.4274 21 6 13.4965 -2.7346 -0.2964 22 8 13.7058 -1.9837 0.6361 23 8 14.4614 -2.9596 -1.2100 24 6 11.7981 -4.2652 -1.4072 25 8 10.5418 -4.6452 -1.1570 26 6 4.2351 -2.2043 0.1618 27 1 -0.4850 0.8401 0.0004 28 1 3.2014 0.4318 -1.7395 29 1 5.5625 0.3747 -2.4037 30 1 7.0829 -1.3001 -1.4432 31 1 8.1134 -2.6021 -0.6732 32 1 8.7382 -4.1330 1.6165 33 1 8.3376 -5.2482 0.2883 34 1 10.9663 -2.6661 1.3639 35 1 15.3030 -2.5011 -1.0817 36 1 12.4026 -4.5907 -2.2410 37 1 3.8660 -2.9243 0.8771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:49 Heat of formation + Delta-G solvation = -92.681815 kcal Electronic energy + Delta-G solvation = -24061.528513 eV Core-core repulsion = 20156.235098 eV Total energy + Delta-G solvation = -3905.293416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.11018 -40.23989 -39.51235 -37.39929 -36.45689 -35.03581 -33.73385 -33.35902 -31.45971 -30.37166 -29.96798 -26.57064 -25.18429 -25.02098 -22.88393 -21.61724 -20.92287 -20.67923 -20.15305 -18.55175 -18.14290 -17.59193 -16.85967 -16.45609 -16.27722 -15.91447 -15.59275 -15.48401 -15.09765 -14.71588 -14.34907 -13.76054 -13.67906 -13.51967 -13.22860 -13.15371 -12.79586 -12.77241 -12.34194 -12.03578 -12.02800 -11.64798 -11.13464 -11.08590 -10.82433 -10.58968 -10.37227 -10.05833 -9.79318 -9.62411 -9.29924 -9.06940 -9.06019 -7.91841 -7.80245 -7.03582 -4.58590 0.69597 1.38811 1.84112 2.24095 2.47967 2.58725 2.64072 3.03376 3.15573 3.23577 3.49513 3.53359 3.90568 4.02888 4.21862 4.44045 4.59900 4.96248 5.16366 5.17623 5.27297 5.33755 5.43613 5.54457 5.80646 5.82579 5.97960 6.02263 6.34416 6.42240 6.51747 6.62063 6.64353 6.93295 7.16040 7.35229 7.45330 7.47819 7.65217 7.72416 7.93418 8.24853 8.48879 8.55187 8.68059 9.98441 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002484 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.127418 B =11270.637753 C =11882.943113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.220 4.220 11 C -0.083 4.083 12 C -0.216 4.216 13 C -0.108 4.108 14 C 0.568 3.432 15 O -0.544 6.544 16 N -0.734 5.734 17 C 0.202 3.798 18 C -0.023 4.023 19 C -0.133 4.133 20 C -0.238 4.238 21 C 0.556 3.444 22 O -0.510 6.510 23 O -0.516 6.516 24 C 0.068 3.932 25 O -0.162 6.162 26 C -0.134 4.134 27 H 0.287 0.713 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.404 0.596 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.167 0.833 35 H 0.417 0.583 36 H 0.223 0.777 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.229 -4.743 -4.183 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.137 4.137 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.240 4.240 11 C -0.101 4.101 12 C -0.236 4.236 13 C -0.111 4.111 14 C 0.359 3.641 15 O -0.422 6.422 16 N -0.390 5.390 17 C 0.079 3.921 18 C -0.072 4.072 19 C -0.153 4.153 20 C -0.240 4.240 21 C 0.401 3.599 22 O -0.399 6.399 23 O -0.329 6.329 24 C -0.004 4.004 25 O -0.056 6.056 26 C -0.155 4.155 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.240 0.760 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.185 0.815 35 H 0.276 0.724 36 H 0.240 0.760 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.123 -5.456 -3.520 23.056 hybrid contribution 1.245 1.570 -0.288 2.024 sum 23.368 -3.886 -3.808 23.993 Atomic orbital electron populations 1.69692 1.08100 1.30436 1.34339 1.26177 0.94769 1.01785 0.90936 0.86309 0.81397 0.79706 0.78881 1.19540 1.21626 1.16657 1.19524 0.92899 0.96336 1.38170 0.88784 1.17703 0.93172 0.91087 0.90234 1.21192 0.95701 1.04246 1.02861 1.20510 0.93728 0.97333 0.98515 1.20380 0.97942 1.00705 1.04603 1.19354 0.94156 0.96975 1.00661 1.18798 0.80920 0.83987 0.80427 1.90720 1.76571 1.40609 1.34280 1.46012 1.09414 1.35511 1.48035 1.19598 0.80341 0.94495 0.97695 1.22294 0.97468 0.99136 0.88297 1.22582 0.90104 1.01208 1.01371 1.20458 0.94253 1.07755 1.01543 1.19658 0.83237 0.78170 0.78866 1.90932 1.81161 1.35385 1.32446 1.84531 1.26754 1.69369 1.52238 1.24788 0.82886 0.94095 0.98592 1.83829 1.26553 1.56424 1.38796 1.21272 0.90988 1.01924 1.01285 0.90273 0.87846 0.88253 0.88662 0.75952 0.87963 0.89368 0.81539 0.72374 0.76025 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.90 13.93 55.55 0.77 -20.13 16 2 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 3 Si 0.91 20.13 24.52 -169.99 -4.17 15.96 16 4 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.24 -5.51 6.86 56.52 0.39 -5.12 16 7 C -0.44 -11.69 9.57 -37.73 -0.36 -12.05 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 9 C 0.08 2.01 5.10 -106.87 -0.55 1.46 16 10 C -0.22 -5.05 7.17 -38.81 -0.28 -5.33 16 11 C -0.08 -1.65 10.01 -39.73 -0.40 -2.05 16 12 C -0.22 -4.07 9.55 -38.92 -0.37 -4.45 16 13 C -0.11 -2.24 5.87 -105.04 -0.62 -2.86 16 14 C 0.57 10.55 7.77 -12.31 -0.10 10.45 16 15 O -0.54 -11.56 16.33 5.32 0.09 -11.48 16 16 N -0.73 -10.17 5.50 -62.42 -0.34 -10.51 16 17 C 0.20 2.26 6.19 -5.19 -0.03 2.23 16 18 C -0.02 -0.23 6.65 -35.74 -0.24 -0.47 16 19 C -0.13 -1.31 10.90 -37.44 -0.41 -1.72 16 20 C -0.24 -2.18 6.31 -103.30 -0.65 -2.83 16 21 C 0.56 5.24 8.33 34.38 0.29 5.52 16 22 O -0.51 -6.54 17.77 -19.29 -0.34 -6.88 16 23 O -0.52 -2.97 13.28 -40.69 -0.54 -3.52 16 24 C 0.07 0.48 11.94 30.10 0.36 0.84 16 25 O -0.16 -1.47 10.52 7.73 0.08 -1.39 16 26 C -0.13 -3.16 9.34 -38.44 -0.36 -3.52 16 27 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 28 H 0.10 2.35 4.72 -52.49 -0.25 2.11 16 29 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.10 1.45 6.38 -52.48 -0.33 1.11 16 31 H 0.40 4.98 6.48 -40.82 -0.26 4.72 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.42 0.65 9.11 45.56 0.42 1.06 16 36 H 0.22 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.12 2.77 7.64 -52.49 -0.40 2.37 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -32.25 333.75 -5.76 -38.02 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -2.54 Total: 7.64 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.80 Total: -12.74 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.43 Total: -30.64 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.72 Total: -23.26 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.17 Total: 15.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.25 -5.76 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.665 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds