Wall clock time and date at job start Tue Mar 31 2020 11:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47343 * 275.41633 * 3 2 1 5 5 H 1.48501 * 109.47196 * 35.41349 * 3 2 1 6 6 H 1.48499 * 109.47456 * 155.41399 * 3 2 1 7 7 C 1.39935 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00274 * 341.73007 * 7 2 1 9 9 C 1.41438 * 119.99803 * 161.73654 * 7 2 1 10 10 C 1.40791 * 120.17782 * 330.16684 * 9 7 2 11 11 C 1.37709 * 120.04241 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41059 * 359.74825 * 11 10 9 13 13 C 1.39888 * 120.35919 * 0.51021 * 12 11 10 14 14 C 1.47882 * 120.02343 * 179.76554 * 13 12 11 15 15 O 1.21555 * 119.99511 * 179.72604 * 14 13 12 16 16 N 1.34774 * 120.00389 * 359.72559 * 14 13 12 17 17 C 1.46500 * 119.99990 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46999 * 179.97438 * 17 16 14 19 19 C 1.34168 * 125.42678 * 89.99978 * 18 17 16 20 20 C 1.47058 * 105.94746 * 179.97438 * 19 18 17 21 21 C 1.47233 * 127.19807 * 180.02562 * 20 19 18 22 22 O 1.21534 * 120.00247 * 0.02562 * 21 20 19 23 23 O 1.34773 * 119.99707 * 179.97438 * 21 20 19 24 24 C 1.36496 * 105.59612 * 359.97438 * 20 19 18 25 25 O 1.33618 * 108.38858 * 359.77370 * 24 20 19 26 26 C 1.39038 * 119.94556 * 359.49025 * 13 12 11 27 27 H 0.97002 * 119.99799 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.97800 * 0.05250 * 10 9 7 29 29 H 1.07997 * 119.79404 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.82292 * 180.27977 * 12 11 10 31 31 H 0.96999 * 119.99660 * 0.02562 * 16 14 13 32 32 H 1.09003 * 109.46691 * 299.99822 * 17 16 14 33 33 H 1.08998 * 109.47208 * 59.99617 * 17 16 14 34 34 H 1.07992 * 127.02234 * 359.97438 * 19 18 17 35 35 H 0.96699 * 116.99580 * 180.02562 * 23 21 20 36 36 H 1.08008 * 125.80282 * 179.97438 * 24 20 19 37 37 H 1.07995 * 120.19384 * 180.22693 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3755 2.1124 -1.3937 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2119 -0.0005 8 1 1.5087 -2.1238 0.2922 9 6 3.3688 -1.2427 -0.3844 10 6 3.8625 -0.3101 -1.3165 11 6 5.1879 -0.3429 -1.6887 12 6 6.0441 -1.2858 -1.1480 13 6 5.5705 -2.2239 -0.2246 14 6 6.4910 -3.2316 0.3447 15 8 6.0800 -4.0434 1.1508 16 7 7.7854 -3.2501 -0.0302 17 6 8.6970 -4.2489 0.5334 18 6 10.0747 -4.0550 -0.0457 19 6 11.0321 -3.2697 0.4709 20 6 12.1892 -3.3992 -0.4274 21 6 13.4965 -2.7346 -0.2964 22 8 13.7058 -1.9837 0.6361 23 8 14.4614 -2.9596 -1.2100 24 6 11.7981 -4.2652 -1.4072 25 8 10.5418 -4.6452 -1.1570 26 6 4.2351 -2.2043 0.1618 27 1 -0.4850 0.8401 0.0004 28 1 3.2014 0.4318 -1.7395 29 1 5.5625 0.3747 -2.4037 30 1 7.0829 -1.3001 -1.4432 31 1 8.1134 -2.6021 -0.6732 32 1 8.7382 -4.1330 1.6165 33 1 8.3376 -5.2482 0.2883 34 1 10.9663 -2.6661 1.3639 35 1 15.3030 -2.5011 -1.0817 36 1 12.4026 -4.5907 -2.2410 37 1 3.8660 -2.9243 0.8771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:48 Heat of formation + Delta-G solvation = -116.290115 kcal Electronic energy + Delta-G solvation = -24062.552246 eV Core-core repulsion = 20156.235098 eV Total energy + Delta-G solvation = -3906.317148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.78657 -41.02797 -40.87204 -39.08197 -37.06949 -36.25860 -35.55896 -34.07921 -32.85526 -31.91673 -31.37415 -27.71123 -26.83336 -25.71701 -24.40641 -22.50268 -22.30106 -21.68326 -21.49485 -19.87635 -18.78375 -18.70963 -17.99968 -17.70014 -17.20995 -17.00476 -16.86343 -16.46524 -16.34178 -16.27687 -15.49894 -15.31357 -14.98587 -14.58595 -14.45165 -14.26823 -14.20411 -13.86742 -13.80067 -13.33891 -13.14437 -12.84074 -12.67247 -12.64124 -12.31458 -11.87724 -11.77155 -11.57016 -11.26981 -11.07978 -10.92118 -10.30890 -9.89094 -9.62997 -9.56749 -8.91439 -6.54987 0.09353 0.16534 0.61585 0.74225 1.25822 1.41893 1.48629 1.59007 1.92758 1.96091 2.02140 2.12377 2.33312 2.64894 3.34768 3.45382 3.62721 3.84927 3.93728 4.17743 4.26275 4.40613 4.44576 4.54687 4.61753 4.66267 4.87616 4.88545 4.91901 5.08236 5.14862 5.23916 5.42265 5.54081 5.64006 5.71499 5.84654 5.85005 6.09467 6.29959 6.47501 6.65664 6.74545 6.95393 7.14574 8.17468 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.002484 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.127418 B =11270.637753 C =11882.943113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.967 3.033 4 H -0.247 1.247 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.487 4.487 8 H 0.051 0.949 9 C 0.064 3.936 10 C -0.224 4.224 11 C -0.083 4.083 12 C -0.182 4.182 13 C -0.113 4.113 14 C 0.569 3.431 15 O -0.578 6.578 16 N -0.712 5.712 17 C 0.202 3.798 18 C -0.030 4.030 19 C -0.135 4.135 20 C -0.267 4.267 21 C 0.563 3.437 22 O -0.555 6.555 23 O -0.502 6.502 24 C 0.103 3.897 25 O -0.168 6.168 26 C -0.164 4.164 27 H 0.295 0.705 28 H 0.106 0.894 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.163 0.837 35 H 0.436 0.564 36 H 0.266 0.734 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.723 -3.778 -6.670 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.170 4.170 3 Si 0.789 3.211 4 H -0.172 1.172 5 H -0.205 1.205 6 H -0.175 1.175 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.062 3.938 10 C -0.244 4.244 11 C -0.101 4.101 12 C -0.202 4.202 13 C -0.116 4.116 14 C 0.358 3.642 15 O -0.459 6.459 16 N -0.366 5.366 17 C 0.080 3.920 18 C -0.078 4.078 19 C -0.155 4.155 20 C -0.270 4.270 21 C 0.409 3.591 22 O -0.448 6.448 23 O -0.316 6.316 24 C 0.031 3.969 25 O -0.062 6.062 26 C -0.185 4.185 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.181 0.819 35 H 0.298 0.702 36 H 0.281 0.719 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 26.674 -4.500 -6.052 27.720 hybrid contribution 0.211 1.095 0.368 1.174 sum 26.886 -3.405 -5.684 27.690 Atomic orbital electron populations 1.69728 1.09301 1.31621 1.36800 1.26899 0.95425 1.04376 0.90284 0.85470 0.79600 0.76013 0.80002 1.17193 1.20527 1.17466 1.19459 0.94498 0.95723 1.41972 0.93065 1.17789 0.92544 0.92392 0.91095 1.21396 0.97422 1.03458 1.02115 1.21029 0.92322 0.98072 0.98666 1.20989 1.00145 0.97827 1.01218 1.19648 0.93368 0.97853 1.00711 1.18493 0.82179 0.83266 0.80257 1.90714 1.77523 1.41782 1.35875 1.45805 1.07955 1.35710 1.47123 1.19642 0.80650 0.93648 0.98067 1.21810 0.96710 1.00100 0.89160 1.22681 0.90687 1.00796 1.01383 1.20555 0.94327 1.09484 1.02588 1.19696 0.83713 0.77201 0.78445 1.90919 1.82013 1.37509 1.34353 1.84481 1.27295 1.69136 1.50708 1.25577 0.81764 0.91428 0.98090 1.83845 1.27497 1.56461 1.38393 1.21211 0.92758 1.02234 1.02253 0.89460 0.87643 0.83638 0.83587 0.74677 0.87499 0.89219 0.81894 0.70151 0.71865 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.71 13.93 21.82 0.30 -46.40 16 2 C 0.04 2.39 5.40 85.25 0.46 2.85 16 3 Si 0.97 41.55 24.52 68.60 1.68 43.23 16 4 H -0.25 -9.65 6.71 99.48 0.67 -8.99 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.25 -10.95 6.86 99.48 0.68 -10.27 16 7 C -0.49 -27.79 9.57 23.47 0.22 -27.57 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 C 0.06 3.28 5.10 -21.32 -0.11 3.17 16 10 C -0.22 -9.94 7.17 22.77 0.16 -9.77 16 11 C -0.08 -2.94 10.01 22.18 0.22 -2.72 16 12 C -0.18 -6.03 9.55 22.70 0.22 -5.81 16 13 C -0.11 -4.49 5.87 -20.13 -0.12 -4.61 16 14 C 0.57 20.33 7.77 86.80 0.67 21.00 16 15 O -0.58 -24.77 16.33 -3.89 -0.06 -24.84 16 16 N -0.71 -17.59 5.50 -469.67 -2.58 -20.18 16 17 C 0.20 4.08 6.19 85.63 0.53 4.61 16 18 C -0.03 -0.50 6.65 24.76 0.16 -0.33 16 19 C -0.14 -2.36 10.90 23.66 0.26 -2.10 16 20 C -0.27 -4.06 6.31 -19.01 -0.12 -4.18 16 21 C 0.56 9.18 8.33 70.19 0.58 9.77 16 22 O -0.56 -13.54 17.77 19.72 0.35 -13.19 16 23 O -0.50 -4.01 13.28 -56.84 -0.75 -4.77 16 24 C 0.10 0.98 11.94 67.41 0.80 1.78 16 25 O -0.17 -2.40 10.52 4.74 0.05 -2.35 16 26 C -0.16 -7.99 9.34 23.01 0.21 -7.78 16 27 H 0.29 14.47 8.30 -92.71 -0.77 13.71 16 28 H 0.11 4.60 4.72 -2.91 -0.01 4.59 16 29 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 30 H 0.15 3.40 6.38 -2.91 -0.02 3.38 16 31 H 0.42 8.30 6.48 -92.71 -0.60 7.70 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.44 -0.06 9.11 -74.06 -0.67 -0.73 16 36 H 0.27 0.01 8.06 -2.91 -0.02 -0.02 16 37 H 0.09 4.82 7.64 -2.91 -0.02 4.79 16 Total: -1.00 -75.81 333.75 2.98 -72.83 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.18 Total: 17.35 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 4.17 Total: -21.69 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -2.28 Total: -66.58 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.42 Total: -45.14 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.68 Total: 43.23 kcal Total: -75.81 2.98 -72.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.463 kcal (2) G-P(sol) polarization free energy of solvation -75.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds