Wall clock time and date at job start Tue Mar 31 2020 11:29:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31295 * 1
3 3 Si 1.86799 * 120.00028 * 2 1
4 4 H 1.48496 * 109.47340 * 274.97903 * 3 2 1
5 5 H 1.48507 * 109.47183 * 34.97470 * 3 2 1
6 6 H 1.48496 * 109.47342 * 154.97484 * 3 2 1
7 7 C 1.38989 * 120.00245 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99724 * 174.04394 * 7 2 1
9 9 N 1.37314 * 119.99795 * 354.31613 * 7 2 1
10 10 C 1.36496 * 126.06526 * 185.48951 * 9 7 2
11 11 C 1.35709 * 107.50394 * 180.02562 * 10 9 7
12 12 N 1.40508 * 126.08456 * 180.02562 * 11 10 9
13 13 C 1.34774 * 119.99780 * 180.02562 * 12 11 10
14 14 O 1.21745 * 120.00315 * 359.97438 * 13 12 11
15 15 C 1.46530 * 119.99965 * 179.97438 * 13 12 11
16 16 C 1.37752 * 125.96092 * 179.70725 * 15 13 12
17 17 C 1.39907 * 106.76247 * 179.90721 * 16 15 13
18 18 C 1.36458 * 107.09399 * 0.35537 * 17 16 15
19 19 C 1.47811 * 125.65351 * 179.81070 * 18 17 16
20 20 N 1.34241 * 126.70761 * 0.02562 * 19 18 17
21 21 N 1.28978 * 107.24859 * 179.97438 * 20 19 18
22 22 N 1.28717 * 109.00839 * 0.02562 * 21 20 19
23 23 H 0.96998 * 125.31567 * 179.97438 * 22 21 20
24 24 N 1.28876 * 109.37190 * 359.74581 * 22 21 20
25 25 O 1.34352 * 108.69653 * 359.78229 * 18 17 16
26 26 C 1.40675 * 107.82566 * 359.97438 * 11 10 9
27 27 N 1.30901 * 108.38773 * 359.72164 * 26 11 10
28 28 H 0.96997 * 120.00151 * 0.02562 * 1 2 3
29 29 H 1.08001 * 126.24944 * 359.97438 * 10 9 7
30 30 H 0.97004 * 120.00273 * 359.97438 * 12 11 10
31 31 H 1.08003 * 126.61881 * 0.02562 * 16 15 13
32 32 H 1.07996 * 126.45451 * 180.13751 * 17 16 15
33 33 H 1.07999 * 125.80353 * 179.97438 * 26 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3129 0.0000 0.0000
3 14 2.2469 1.6177 0.0000
4 1 2.3892 2.1072 -1.3947
5 1 1.5009 2.6201 0.8026
6 1 3.5931 1.4121 0.5922
7 6 2.0079 -1.2037 0.0005
8 1 3.0836 -1.2061 -0.0965
9 7 1.3264 -2.3899 0.1188
10 6 1.8855 -3.6293 0.2390
11 6 0.8720 -4.5272 0.3293
12 7 1.0090 -5.9189 0.4659
13 6 -0.0869 -6.6994 0.5443
14 8 -1.1956 -6.1987 0.4973
15 6 0.0560 -8.1508 0.6861
16 6 -0.9747 -9.0596 0.7827
17 6 -0.3880 -10.3242 0.9009
18 6 0.9642 -10.1425 0.8805
19 6 1.9790 -11.2123 0.9832
20 7 1.7473 -12.5283 1.1120
21 7 2.8945 -13.1151 1.1668
22 7 3.8235 -12.2284 1.0790
23 1 4.7760 -12.4108 1.0953
24 7 3.2905 -11.0610 0.9613
25 8 1.2205 -8.8300 0.7509
26 6 -0.3402 -3.8165 0.2631
27 7 -0.0657 -2.5421 0.1440
28 1 -0.4850 0.8400 -0.0004
29 1 2.9416 -3.8544 0.2578
30 1 1.8924 -6.3180 0.5029
31 1 -2.0318 -8.8386 0.7680
32 1 -0.9075 -11.2663 0.9945
33 1 -1.3291 -4.2484 0.3075
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001606354885.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:50
Heat of formation + Delta-G solvation = 201.585999 kcal
Electronic energy + Delta-G solvation = -23915.602916 eV
Core-core repulsion = 19984.115069 eV
Total energy + Delta-G solvation = -3931.487847 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-44.90655 -42.81111 -39.92809 -38.51411 -34.95591 -34.45278 -33.91400 -33.31998
-33.08251 -30.48276 -29.99072 -27.86540 -25.61409 -25.01695 -24.57680 -22.48935
-21.90397 -21.03311 -20.34257 -19.65064 -19.47921 -18.31734 -17.66738 -17.43485
-16.67626 -16.46567 -15.52280 -15.30689 -14.55632 -14.44174 -14.36647 -13.88299
-13.34248 -13.23683 -13.20806 -13.19133 -12.84305 -12.80245 -11.88382 -11.72769
-11.59248 -11.55389 -11.51914 -11.29836 -11.02528 -10.55629 -10.30974 -10.20051
-9.66245 -9.23706 -8.87989 -8.68856 -8.12210 -6.78038 -6.61109 -4.27758
0.29545 0.75343 1.59606 1.65890 2.14227 2.45862 2.90746 3.02766
3.08565 3.19375 3.27563 3.50209 3.67519 3.81865 4.01612 4.36696
4.61552 4.63920 4.76753 4.94287 4.96901 5.02168 5.45143 5.45903
5.67768 5.90873 6.09482 6.18987 6.34998 6.54234 6.79877 6.88919
7.01094 7.16174 7.66176 7.79885 8.03131 8.17974 8.47803 8.69176
9.31288 9.59829 10.35003
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.028958 B = 0.002400 C = 0.002219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 966.676142 B =11664.160393 C =12617.388782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.767 5.767
2 C 0.046 3.954
3 Si 0.935 3.065
4 H -0.271 1.271
5 H -0.275 1.275
6 H -0.263 1.263
7 C -0.322 4.322
8 H 0.118 0.882
9 N -0.139 5.139
10 C -0.079 4.079
11 C -0.066 4.066
12 N -0.603 5.603
13 C 0.578 3.422
14 O -0.510 6.510
15 C -0.022 4.022
16 C -0.135 4.135
17 C -0.138 4.138
18 C 0.060 3.940
19 C 0.253 3.747
20 N -0.250 5.250
21 N -0.043 5.043
22 N -0.222 5.222
23 H 0.479 0.521
24 N -0.277 5.277
25 O -0.146 6.146
26 C -0.027 4.027
27 N -0.260 5.260
28 H 0.276 0.724
29 H 0.148 0.852
30 H 0.403 0.597
31 H 0.172 0.828
32 H 0.169 0.831
33 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.027 -20.446 1.994 21.711
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.393 5.393
2 C -0.171 4.171
3 Si 0.759 3.241
4 H -0.196 1.196
5 H -0.200 1.200
6 H -0.187 1.187
7 C -0.455 4.455
8 H 0.135 0.865
9 N 0.094 4.906
10 C -0.230 4.230
11 C -0.172 4.172
12 N -0.243 5.243
13 C 0.363 3.637
14 O -0.387 6.387
15 C -0.078 4.078
16 C -0.156 4.156
17 C -0.160 4.160
18 C 0.005 3.995
19 C -0.027 4.027
20 N -0.125 5.125
21 N -0.038 5.038
22 N -0.069 5.069
23 H 0.334 0.666
24 N -0.130 5.130
25 O -0.040 6.040
26 C -0.203 4.203
27 N -0.091 5.091
28 H 0.086 0.914
29 H 0.165 0.835
30 H 0.237 0.763
31 H 0.190 0.810
32 H 0.187 0.813
33 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges 6.075 -19.181 1.888 20.208
hybrid contribution 1.774 -0.191 0.068 1.786
sum 7.849 -19.372 1.956 20.993
Atomic orbital electron populations
1.70215 1.06185 1.28141 1.34771 1.25663 0.95709 1.00350 0.95394
0.85805 0.79517 0.79931 0.78878 1.19617 1.19989 1.18711 1.19907
0.92193 0.80622 1.52741 0.86485 1.44581 1.04044 1.03717 1.38295
1.21276 0.96901 0.85662 1.19161 1.17229 0.94588 0.81026 1.24352
1.42389 1.08143 1.05527 1.68260 1.16269 0.85230 0.81710 0.80477
1.90813 1.25067 1.71229 1.51632 1.22974 0.82807 0.93326 1.08648
1.22149 1.00817 0.90254 1.02335 1.21768 0.91057 0.99927 1.03298
1.17990 0.90358 0.80055 1.11072 1.21904 0.87266 0.90480 1.03007
1.76174 1.15668 1.03165 1.17514 1.78951 0.91469 1.18690 1.14686
1.47723 1.12921 1.01120 1.45124 0.66618 1.75230 1.09408 1.07500
1.20828 1.84097 1.33297 1.16700 1.69859 1.24137 0.97900 0.90900
1.07328 1.78271 0.90236 1.14957 1.25639 0.91351 0.83466 0.76282
0.81030 0.81317 0.80549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -21.13 11.83 55.50 0.66 -20.47 16
2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16
3 Si 0.94 18.63 29.56 -169.99 -5.02 13.60 16
4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16
5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16
7 C -0.32 -8.40 10.24 -14.82 -0.15 -8.55 16
8 H 0.12 2.72 7.84 -52.49 -0.41 2.30 16
9 N -0.14 -3.78 3.74 -11.40 -0.04 -3.82 16
10 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16
11 C -0.07 -1.51 6.90 -83.86 -0.58 -2.09 16
12 N -0.60 -10.98 5.46 -11.22 -0.06 -11.04 16
13 C 0.58 10.35 7.75 -12.92 -0.10 10.25 16
14 O -0.51 -10.62 14.01 5.15 0.07 -10.55 16
15 C -0.02 -0.32 7.16 -36.42 -0.26 -0.58 16
16 C -0.13 -1.62 10.65 -39.13 -0.42 -2.04 16
17 C -0.14 -1.45 10.78 -39.60 -0.43 -1.88 16
18 C 0.06 0.72 7.24 -36.31 -0.26 0.45 16
19 C 0.25 2.82 8.20 -156.22 -1.28 1.54 16
20 N -0.25 -2.68 12.53 32.07 0.40 -2.28 16
21 N -0.04 -0.37 13.46 60.35 0.81 0.44 16
22 N -0.22 -1.43 7.90 60.35 0.48 -0.96 16
23 H 0.48 0.68 8.96 -340.33 -3.05 -2.37 16
24 N -0.28 -2.73 12.41 32.09 0.40 -2.34 16
25 O -0.15 -1.94 10.42 3.74 0.04 -1.90 16
26 C -0.03 -0.70 10.85 -17.03 -0.18 -0.88 16
27 N -0.26 -7.46 10.41 30.80 0.32 -7.14 16
28 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16
29 H 0.15 2.85 8.06 -52.49 -0.42 2.42 16
30 H 0.40 6.02 8.58 -40.82 -0.35 5.67 16
31 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16
32 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16
33 H 0.18 4.46 5.91 -52.49 -0.31 4.15 16
LS Contribution 313.57 15.07 4.73 4.73
Total: -1.00 -34.20 313.57 -5.70 -39.90
By element:
Atomic # 1 Polarization: 11.06 SS G_CDS: -4.53 Total: 6.53 kcal
Atomic # 6 Polarization: -0.76 SS G_CDS: -3.95 Total: -4.71 kcal
Atomic # 7 Polarization: -50.56 SS G_CDS: 2.96 Total: -47.60 kcal
Atomic # 8 Polarization: -12.56 SS G_CDS: 0.11 Total: -12.45 kcal
Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.60 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -34.20 -5.70 -39.90 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001606354885.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 241.486 kcal
(2) G-P(sol) polarization free energy of solvation -34.203 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal
(6) G-S(sol) free energy of system = (1) + (5) 201.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds