Wall clock time and date at job start Tue Mar 31 2020 11:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47162 * 269.99242 * 3 2 1 5 5 H 1.48497 * 109.47103 * 29.99930 * 3 2 1 6 6 H 1.48502 * 109.46966 * 149.99795 * 3 2 1 7 7 C 1.37880 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00263 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99512 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.46876 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.93094 * 90.00011 * 10 9 7 12 12 C 1.38104 * 120.07914 * 179.97438 * 11 10 9 13 13 C 1.38908 * 119.92394 * 0.02562 * 12 11 10 14 14 N 1.39801 * 120.07381 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00051 * 35.08924 * 14 13 12 16 16 O 1.21624 * 119.99776 * 355.38618 * 15 14 13 17 17 C 1.47273 * 119.99637 * 175.38283 * 15 14 13 18 18 C 1.36614 * 125.79603 * 179.97438 * 17 15 14 19 19 C 1.40027 * 106.93482 * 179.97438 * 18 17 15 20 20 C 1.36654 * 106.92094 * 0.02562 * 19 18 17 21 21 C 1.47118 * 125.81179 * 179.97438 * 20 19 18 22 22 O 1.21537 * 119.99877 * 0.02562 * 21 20 19 23 23 O 1.34821 * 120.00313 * 180.02562 * 21 20 19 24 24 O 1.34529 * 125.80201 * 0.02562 * 17 15 14 25 25 C 1.38909 * 119.85189 * 0.27117 * 13 12 11 26 26 C 1.38104 * 119.92087 * 359.40537 * 25 13 12 27 27 H 0.97005 * 119.99940 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47439 * 60.00395 * 9 7 2 29 29 H 1.09004 * 109.46887 * 300.00012 * 9 7 2 30 30 H 1.08009 * 119.95968 * 359.97438 * 11 10 9 31 31 H 1.08004 * 120.03779 * 179.97438 * 12 11 10 32 32 H 0.97000 * 119.99682 * 215.09027 * 14 13 12 33 33 H 1.07996 * 126.53160 * 0.02562 * 18 17 15 34 34 H 1.07996 * 126.53979 * 179.73906 * 19 18 17 35 35 H 0.96699 * 117.00602 * 180.02562 * 23 21 20 36 36 H 1.07992 * 120.03783 * 179.70968 * 25 13 12 37 37 H 1.08007 * 119.96192 * 180.29503 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0137 -2.6149 0.0010 11 6 4.2442 -3.2652 -1.1975 12 6 4.7050 -4.5670 -1.2012 13 6 4.9365 -5.2236 0.0009 14 7 5.4035 -6.5413 0.0008 15 6 6.2619 -6.9520 -0.9538 16 8 6.5649 -6.2025 -1.8624 17 6 6.8328 -8.3083 -0.8963 18 6 7.7091 -8.8452 -1.7965 19 6 7.9918 -10.1467 -1.3641 20 6 7.2755 -10.3495 -0.2181 21 6 7.2660 -11.5825 0.5842 22 8 7.9378 -12.5357 0.2417 23 8 6.5120 -11.6553 1.6995 24 8 6.5794 -9.2294 0.0509 25 6 4.6982 -4.5696 1.2030 26 6 4.2437 -3.2655 1.1994 27 1 -0.4850 0.8401 -0.0004 28 1 3.8744 -0.6801 0.8911 29 1 3.8751 -0.6804 -0.8889 30 1 4.0635 -2.7543 -2.1318 31 1 4.8844 -5.0744 -2.1376 32 1 5.1098 -7.1599 0.6877 33 1 8.1083 -8.3583 -2.6739 34 1 8.6470 -10.8565 -1.8469 35 1 6.5385 -12.4859 2.1940 36 1 4.8727 -5.0787 2.1392 37 1 4.0627 -2.7548 2.1337 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:55 Heat of formation + Delta-G solvation = -77.029534 kcal Electronic energy + Delta-G solvation = -23973.300632 eV Core-core repulsion = 20068.685950 eV Total energy + Delta-G solvation = -3904.614682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.43195 -40.64162 -40.32453 -38.32340 -36.82772 -35.27761 -33.75210 -33.04199 -31.49787 -30.59925 -30.42698 -27.45029 -25.69675 -23.61918 -22.51257 -22.44816 -21.83455 -20.86269 -20.16615 -19.28600 -18.62867 -17.86286 -17.32843 -17.24319 -16.79243 -15.98155 -15.41078 -15.19109 -14.96268 -14.36510 -14.19375 -14.07173 -13.90451 -13.77176 -13.67391 -13.23866 -12.97691 -12.50439 -12.47667 -12.27055 -11.76892 -11.67012 -11.56112 -11.03726 -10.75130 -10.57617 -10.55112 -10.25865 -9.96543 -9.70896 -9.48769 -9.35660 -8.60413 -8.43774 -7.56909 -6.09377 -4.08753 -0.10022 1.17774 1.58120 1.82266 1.92405 2.22589 2.39784 2.75401 2.86240 3.27818 3.35700 3.38198 4.12164 4.17696 4.34546 4.39878 4.52146 4.83675 4.90949 5.20651 5.22360 5.30884 5.42262 5.57133 5.69585 5.70150 5.81564 5.88286 6.02901 6.05900 6.47442 6.59736 6.64253 6.89340 6.97383 6.99777 7.14452 7.21339 7.46049 7.54234 7.67229 7.76364 8.46988 8.95700 9.50751 11.03432 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.034804 B = 0.002197 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.318338 B =12743.947396 C =13191.670129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.013 3.987 10 C -0.032 4.032 11 C -0.107 4.107 12 C -0.113 4.113 13 C 0.097 3.903 14 N -0.649 5.649 15 C 0.595 3.405 16 O -0.490 6.490 17 C -0.019 4.019 18 C -0.137 4.137 19 C -0.112 4.112 20 C -0.039 4.039 21 C 0.573 3.427 22 O -0.488 6.488 23 O -0.500 6.500 24 O -0.140 6.140 25 C -0.134 4.134 26 C -0.106 4.106 27 H 0.264 0.736 28 H 0.029 0.971 29 H 0.025 0.975 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.413 0.587 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.423 0.577 36 H 0.118 0.882 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.861 -22.240 1.549 27.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.024 4.024 10 C -0.032 4.032 11 C -0.125 4.125 12 C -0.133 4.133 13 C 0.005 3.995 14 N -0.293 5.293 15 C 0.380 3.620 16 O -0.365 6.365 17 C -0.074 4.074 18 C -0.157 4.157 19 C -0.131 4.131 20 C -0.090 4.090 21 C 0.416 3.584 22 O -0.377 6.377 23 O -0.313 6.313 24 O -0.035 6.035 25 C -0.154 4.154 26 C -0.125 4.125 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.249 0.751 33 H 0.194 0.806 34 H 0.192 0.808 35 H 0.283 0.717 36 H 0.136 0.864 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.901 -21.465 0.866 26.727 hybrid contribution 0.206 -0.105 0.614 0.656 sum 16.107 -21.570 1.480 26.961 Atomic orbital electron populations 1.69898 1.06260 1.26999 1.50604 1.25005 0.94751 0.99053 0.94482 0.86801 0.80378 0.83634 0.78679 1.20139 1.21268 1.18911 1.20919 0.88179 0.94672 1.51355 0.90783 1.18831 0.97488 0.88576 0.97509 1.20368 0.92567 0.98148 0.92137 1.21006 0.99038 0.93944 0.98528 1.21127 0.99700 0.95613 0.96868 1.17504 1.03475 0.83726 0.94747 1.43188 1.44110 1.12000 1.30039 1.16655 0.79151 0.83046 0.83115 1.90920 1.60080 1.51947 1.33531 1.22643 1.02658 0.90846 0.91256 1.22038 0.98417 0.94050 1.01214 1.22044 0.99785 0.97300 0.93979 1.20925 1.02223 0.86670 0.99227 1.18904 0.76411 0.84456 0.78593 1.91016 1.40979 1.35827 1.69862 1.84648 1.63941 1.45630 1.37041 1.84144 1.54964 1.20237 1.44124 1.20767 1.03676 0.95387 0.95587 1.20881 0.99473 0.93542 0.98556 0.92585 0.95295 0.95705 0.85732 0.85124 0.75073 0.80609 0.80757 0.71703 0.86375 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.51 -14.29 9.65 -34.44 -0.33 -14.63 16 8 H 0.07 2.26 7.98 -52.49 -0.42 1.84 16 9 C 0.01 0.31 4.17 -29.04 -0.12 0.18 16 10 C -0.03 -0.65 5.07 -104.59 -0.53 -1.18 16 11 C -0.11 -2.03 9.69 -39.61 -0.38 -2.41 16 12 C -0.11 -1.95 8.69 -39.38 -0.34 -2.29 16 13 C 0.10 1.50 6.30 -83.73 -0.53 0.97 16 14 N -0.65 -7.89 5.33 -10.88 -0.06 -7.95 16 15 C 0.60 7.44 7.65 -12.59 -0.10 7.35 16 16 O -0.49 -7.50 14.29 5.26 0.08 -7.42 16 17 C -0.02 -0.19 7.13 -36.50 -0.26 -0.45 16 18 C -0.14 -1.15 10.60 -39.50 -0.42 -1.56 16 19 C -0.11 -0.83 10.60 -39.48 -0.42 -1.24 16 20 C -0.04 -0.33 7.19 -36.55 -0.26 -0.59 16 21 C 0.57 4.49 8.32 34.33 0.29 4.78 16 22 O -0.49 -4.73 17.65 -19.29 -0.34 -5.07 16 23 O -0.50 -2.76 13.44 -42.25 -0.57 -3.33 16 24 O -0.14 -1.31 10.42 4.09 0.04 -1.27 16 25 C -0.13 -2.04 9.97 -39.38 -0.39 -2.44 16 26 C -0.11 -1.90 9.69 -39.61 -0.38 -2.29 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 29 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 30 H 0.12 2.29 8.06 -52.48 -0.42 1.86 16 31 H 0.13 2.19 6.22 -52.48 -0.33 1.86 16 32 H 0.41 3.86 8.58 -40.82 -0.35 3.51 16 33 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.42 0.19 9.11 45.56 0.42 0.61 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -34.25 338.65 -6.65 -40.89 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.72 Total: 3.00 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -4.28 Total: -13.95 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.72 Total: -34.40 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.79 Total: -17.09 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.25 -6.65 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.138 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds