Wall clock time and date at job start Tue Mar 31 2020 11:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48496 * 109.47162 * 269.99242 * 3 2 1 5 5 H 1.48497 * 109.47103 * 29.99930 * 3 2 1 6 6 H 1.48502 * 109.46966 * 149.99795 * 3 2 1 7 7 C 1.37880 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00263 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99512 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.46876 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.93094 * 90.00011 * 10 9 7 12 12 C 1.38104 * 120.07914 * 179.97438 * 11 10 9 13 13 C 1.38908 * 119.92394 * 0.02562 * 12 11 10 14 14 N 1.39801 * 120.07381 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00051 * 35.08924 * 14 13 12 16 16 O 1.21624 * 119.99776 * 355.38618 * 15 14 13 17 17 C 1.47273 * 119.99637 * 175.38283 * 15 14 13 18 18 C 1.36614 * 125.79603 * 179.97438 * 17 15 14 19 19 C 1.40027 * 106.93482 * 179.97438 * 18 17 15 20 20 C 1.36654 * 106.92094 * 0.02562 * 19 18 17 21 21 C 1.47118 * 125.81179 * 179.97438 * 20 19 18 22 22 O 1.21537 * 119.99877 * 0.02562 * 21 20 19 23 23 O 1.34821 * 120.00313 * 180.02562 * 21 20 19 24 24 O 1.34529 * 125.80201 * 0.02562 * 17 15 14 25 25 C 1.38909 * 119.85189 * 0.27117 * 13 12 11 26 26 C 1.38104 * 119.92087 * 359.40537 * 25 13 12 27 27 H 0.97005 * 119.99940 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47439 * 60.00395 * 9 7 2 29 29 H 1.09004 * 109.46887 * 300.00012 * 9 7 2 30 30 H 1.08009 * 119.95968 * 359.97438 * 11 10 9 31 31 H 1.08004 * 120.03779 * 179.97438 * 12 11 10 32 32 H 0.97000 * 119.99682 * 215.09027 * 14 13 12 33 33 H 1.07996 * 126.53160 * 0.02562 * 18 17 15 34 34 H 1.07996 * 126.53979 * 179.73906 * 19 18 17 35 35 H 0.96699 * 117.00602 * 180.02562 * 23 21 20 36 36 H 1.07992 * 120.03783 * 179.70968 * 25 13 12 37 37 H 1.08007 * 119.96192 * 180.29503 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0137 -2.6149 0.0010 11 6 4.2442 -3.2652 -1.1975 12 6 4.7050 -4.5670 -1.2012 13 6 4.9365 -5.2236 0.0009 14 7 5.4035 -6.5413 0.0008 15 6 6.2619 -6.9520 -0.9538 16 8 6.5649 -6.2025 -1.8624 17 6 6.8328 -8.3083 -0.8963 18 6 7.7091 -8.8452 -1.7965 19 6 7.9918 -10.1467 -1.3641 20 6 7.2755 -10.3495 -0.2181 21 6 7.2660 -11.5825 0.5842 22 8 7.9378 -12.5357 0.2417 23 8 6.5120 -11.6553 1.6995 24 8 6.5794 -9.2294 0.0509 25 6 4.6982 -4.5696 1.2030 26 6 4.2437 -3.2655 1.1994 27 1 -0.4850 0.8401 -0.0004 28 1 3.8744 -0.6801 0.8911 29 1 3.8751 -0.6804 -0.8889 30 1 4.0635 -2.7543 -2.1318 31 1 4.8844 -5.0744 -2.1376 32 1 5.1098 -7.1599 0.6877 33 1 8.1083 -8.3583 -2.6739 34 1 8.6470 -10.8565 -1.8469 35 1 6.5385 -12.4859 2.1940 36 1 4.8727 -5.0787 2.1392 37 1 4.0627 -2.7548 2.1337 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:54 Heat of formation + Delta-G solvation = -100.506470 kcal Electronic energy + Delta-G solvation = -23974.318669 eV Core-core repulsion = 20068.685950 eV Total energy + Delta-G solvation = -3905.632718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.11047 -41.59119 -41.06493 -39.61356 -37.35846 -36.51801 -34.99853 -34.39441 -32.86146 -31.84494 -31.65370 -28.97619 -26.63310 -24.89131 -23.91183 -23.51446 -22.57893 -21.95571 -21.38599 -20.02091 -19.34800 -18.94936 -18.58827 -18.32710 -18.01804 -16.84665 -16.66720 -16.30977 -16.14323 -15.95945 -15.34168 -15.03489 -14.87948 -14.54810 -14.39876 -14.36527 -14.28470 -14.18356 -13.93683 -13.52101 -13.26934 -12.79309 -12.55566 -12.33282 -12.26347 -11.93774 -11.84254 -11.68340 -11.38787 -11.36050 -11.06410 -10.77106 -10.19347 -9.79881 -8.94458 -8.28084 -6.32919 -0.81307 0.29727 0.54260 0.67754 0.92749 1.38862 1.39814 1.51856 1.62072 1.65644 1.82912 2.08032 2.36968 2.92428 3.06343 3.36795 3.56446 3.96276 4.02066 4.11131 4.20732 4.25087 4.30245 4.52269 4.57189 4.62547 4.67820 4.97418 5.04575 5.07757 5.19926 5.25573 5.31396 5.34070 5.45795 5.54337 5.59457 5.98424 6.09504 6.19058 6.29380 6.73262 6.74276 6.76047 7.30396 8.88207 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.034804 B = 0.002197 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.318338 B =12743.947396 C =13191.670129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.019 3.981 10 C -0.068 4.068 11 C -0.119 4.119 12 C -0.121 4.121 13 C 0.110 3.890 14 N -0.642 5.642 15 C 0.599 3.401 16 O -0.521 6.521 17 C -0.038 4.038 18 C -0.124 4.124 19 C -0.105 4.105 20 C -0.044 4.044 21 C 0.581 3.419 22 O -0.509 6.509 23 O -0.498 6.498 24 O -0.143 6.143 25 C -0.123 4.123 26 C -0.113 4.113 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.028 0.972 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.429 0.571 33 H 0.189 0.811 34 H 0.198 0.802 35 H 0.444 0.556 36 H 0.158 0.842 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.125 -23.620 2.386 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.555 4.555 8 H 0.048 0.952 9 C -0.018 4.018 10 C -0.068 4.068 11 C -0.138 4.138 12 C -0.141 4.141 13 C 0.017 3.983 14 N -0.287 5.287 15 C 0.387 3.613 16 O -0.399 6.399 17 C -0.093 4.093 18 C -0.144 4.144 19 C -0.124 4.124 20 C -0.096 4.096 21 C 0.425 3.575 22 O -0.400 6.400 23 O -0.313 6.313 24 O -0.038 6.038 25 C -0.143 4.143 26 C -0.131 4.131 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.268 0.732 33 H 0.206 0.794 34 H 0.215 0.785 35 H 0.308 0.692 36 H 0.176 0.824 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.170 -22.898 1.740 29.283 hybrid contribution -0.496 0.067 0.379 0.628 sum 17.674 -22.831 2.119 28.950 Atomic orbital electron populations 1.70057 1.08277 1.28210 1.52387 1.25983 0.95613 1.03375 0.94083 0.85660 0.79599 0.78197 0.79244 1.19284 1.20896 1.16714 1.21157 0.90762 0.93001 1.50616 0.95232 1.18673 0.94309 0.91098 0.97705 1.20236 0.95515 0.97288 0.93769 1.21017 0.99800 0.94904 0.98042 1.21177 0.99927 0.95077 0.97952 1.17583 1.01593 0.84879 0.94203 1.43109 1.44002 1.10984 1.30627 1.16859 0.78505 0.83690 0.82267 1.90905 1.61100 1.53223 1.34645 1.22164 1.04174 0.90286 0.92644 1.22306 0.97027 0.94243 1.00853 1.22334 0.99481 0.97120 0.93461 1.21266 1.02001 0.86628 0.99704 1.18762 0.76134 0.83811 0.78811 1.91016 1.42001 1.36402 1.70542 1.84611 1.63006 1.47317 1.36329 1.84112 1.55338 1.20369 1.44025 1.21064 1.01845 0.94274 0.97118 1.21042 0.99419 0.94771 0.97889 0.92411 0.94619 0.95409 0.86271 0.84924 0.73224 0.79376 0.78516 0.69197 0.82403 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.37 5.47 84.66 0.46 0.83 16 3 Si 0.95 43.70 27.47 68.60 1.88 45.58 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 7 C -0.52 -29.79 9.65 25.60 0.25 -29.54 16 8 H 0.03 1.90 7.98 -2.91 -0.02 1.88 16 9 C 0.02 0.91 4.17 29.10 0.12 1.03 16 10 C -0.07 -2.80 5.07 -19.84 -0.10 -2.90 16 11 C -0.12 -4.63 9.69 22.25 0.22 -4.41 16 12 C -0.12 -4.17 8.69 22.40 0.19 -3.97 16 13 C 0.11 3.23 6.30 38.19 0.24 3.47 16 14 N -0.64 -14.33 5.33 -306.58 -1.63 -15.97 16 15 C 0.60 14.12 7.65 86.62 0.66 14.78 16 16 O -0.52 -15.54 14.29 -4.11 -0.06 -15.60 16 17 C -0.04 -0.70 7.13 24.27 0.17 -0.53 16 18 C -0.12 -1.80 10.60 22.32 0.24 -1.56 16 19 C -0.10 -1.28 10.60 22.33 0.24 -1.04 16 20 C -0.04 -0.65 7.19 24.23 0.17 -0.47 16 21 C 0.58 7.78 8.32 70.15 0.58 8.36 16 22 O -0.51 -8.81 17.65 19.71 0.35 -8.46 16 23 O -0.50 -4.23 13.44 -55.97 -0.75 -4.98 16 24 O -0.14 -2.36 10.42 -7.27 -0.08 -2.44 16 25 C -0.12 -3.49 9.97 22.40 0.22 -3.26 16 26 C -0.11 -3.96 9.69 22.25 0.22 -3.74 16 27 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 28 H 0.04 1.61 7.14 -2.39 -0.02 1.60 16 29 H 0.03 1.27 7.51 -2.38 -0.02 1.26 16 30 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.13 4.47 6.22 -2.91 -0.02 4.45 16 32 H 0.43 6.90 8.58 -92.71 -0.80 6.10 16 33 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 35 H 0.44 -0.75 9.11 -74.06 -0.67 -1.43 16 36 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -76.03 338.65 3.53 -72.50 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -0.37 Total: 11.31 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 3.89 Total: -22.95 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.33 Total: -74.97 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.54 Total: -31.48 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Total: -76.03 3.53 -72.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.003 kcal (2) G-P(sol) polarization free energy of solvation -76.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds