Wall clock time and date at job start Tue Mar 31 2020 11:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 S 1.76195 * 119.92813 * 179.76958 * 6 5 4 8 8 O 1.42091 * 106.40453 * 23.56516 * 7 6 5 9 9 O 1.42107 * 106.40241 * 156.48679 * 7 6 5 10 10 N 1.65605 * 107.21922 * 270.02258 * 7 6 5 11 11 C 1.46502 * 119.99401 * 90.00136 * 10 7 6 12 12 C 1.46490 * 120.00212 * 270.00125 * 10 7 6 13 13 C 1.50699 * 109.47476 * 94.99921 * 12 10 7 14 14 H 1.08002 * 119.99563 * 0.02562 * 13 12 10 15 15 C 1.37880 * 120.00568 * 179.97438 * 13 12 10 16 16 N 1.31511 * 119.99961 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99592 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47072 * 90.00131 * 17 15 13 19 19 H 1.48500 * 109.46677 * 209.99995 * 17 15 13 20 20 H 1.48500 * 109.47056 * 329.99661 * 17 15 13 21 21 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 22 22 C 1.38563 * 119.99940 * 359.97369 * 21 6 5 23 23 O 1.35997 * 120.07546 * 180.02562 * 22 21 6 24 24 C 1.42902 * 116.99582 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 28 28 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 30 30 H 1.08998 * 109.46991 * 90.00510 * 11 10 7 31 31 H 1.09004 * 109.46640 * 209.99855 * 11 10 7 32 32 H 1.08993 * 109.47375 * 329.99769 * 11 10 7 33 33 H 1.09004 * 109.47331 * 215.00029 * 12 10 7 34 34 H 1.09001 * 109.47264 * 334.99921 * 12 10 7 35 35 H 0.97005 * 119.99686 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.00331 * 179.97438 * 21 6 5 37 37 H 1.09007 * 109.46665 * 179.97438 * 24 23 22 38 38 H 1.08998 * 109.47287 * 299.99772 * 24 23 22 39 39 H 1.09001 * 109.47198 * 60.00379 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 16 4.0987 5.2519 -0.0016 8 8 3.1651 6.1746 0.5423 9 8 5.3950 5.0456 0.5429 10 7 4.3203 5.6886 -1.5836 11 6 3.2862 6.4548 -2.2836 12 6 5.5501 5.3087 -2.2831 13 6 5.3203 4.0283 -3.0439 14 1 4.3545 3.5460 -3.0101 15 6 6.3426 3.4730 -3.7839 16 7 6.1418 2.3559 -4.4482 17 14 8.0128 4.3076 -3.8429 18 1 8.8635 3.7907 -2.7410 19 1 8.6634 4.0211 -5.1467 20 1 7.8390 5.7742 -3.6880 21 6 4.0602 2.5235 -0.0005 22 6 3.4359 1.2864 0.0000 23 8 4.1795 0.1478 0.0010 24 6 5.6003 0.3008 0.0009 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2146 2.3197 -0.0099 29 1 1.3341 4.5115 -0.0026 30 1 3.4732 7.5207 -2.1534 31 1 3.3082 6.2091 -3.3454 32 1 2.3081 6.2047 -1.8730 33 1 5.8314 6.0992 -2.9788 34 1 6.3501 5.1615 -1.5575 35 1 6.8612 1.9651 -4.9686 36 1 5.1386 2.5841 -0.0005 37 1 6.0716 -0.6821 0.0022 38 1 5.9066 0.8498 -0.8896 39 1 5.9065 0.8513 0.8904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032129763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:40 Heat of formation + Delta-G solvation = -108.117177 kcal Electronic energy + Delta-G solvation = -25501.876823 eV Core-core repulsion = 21731.358032 eV Total energy + Delta-G solvation = -3770.518792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38973 -38.32117 -36.81299 -36.65517 -35.68590 -35.33013 -32.48406 -30.40329 -30.22032 -28.44561 -27.32496 -26.95781 -25.22238 -22.70792 -22.06929 -21.86177 -18.98989 -18.22207 -17.46989 -16.92865 -16.74522 -16.69494 -15.96532 -15.90063 -15.39242 -15.05629 -14.66525 -14.39561 -14.33137 -13.78414 -13.25627 -13.04233 -12.87338 -12.73630 -12.50749 -12.41621 -12.14901 -11.85436 -11.67725 -11.41000 -11.35448 -11.27663 -11.22147 -11.15686 -10.90346 -10.79587 -10.55462 -10.33089 -10.24611 -9.63079 -8.74995 -8.67826 -8.13697 -7.79771 -6.18744 -4.20346 0.89705 1.20078 1.50651 3.21458 3.22539 3.29575 3.32904 3.43745 3.51111 3.78756 4.28701 4.31347 4.69210 4.86389 5.02926 5.08180 5.13388 5.14524 5.35516 5.39472 5.47218 5.48606 5.55794 5.60515 5.74615 5.96236 5.97661 5.99672 6.13972 6.23703 6.30932 6.43032 6.73678 6.78255 7.04389 7.10698 7.30116 7.49235 7.69155 8.37212 8.85795 9.40724 10.93131 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.006505 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.628458 B = 4303.242160 C = 5535.606468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.146 3.854 4 C -0.201 4.201 5 C -0.020 4.020 6 C -0.662 4.662 7 S 2.697 3.303 8 O -0.975 6.975 9 O -0.962 6.962 10 N -0.981 5.981 11 C 0.103 3.897 12 C 0.211 3.789 13 C -0.544 4.544 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.891 5.891 17 Si 0.866 3.134 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.049 4.049 22 C 0.084 3.916 23 O -0.307 6.307 24 C 0.019 3.981 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.265 0.735 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -0.759 7.784 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.099 3.901 4 C -0.220 4.220 5 C -0.040 4.040 6 C -0.749 4.749 7 S 2.786 3.214 8 O -0.965 6.965 9 O -0.952 6.952 10 N -0.820 5.820 11 C -0.043 4.043 12 C 0.088 3.912 13 C -0.583 4.583 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.693 3.307 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.068 4.068 22 C 0.038 3.962 23 O -0.221 6.221 24 C -0.076 4.076 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.172 0.828 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.340 -0.815 8.360 11.836 hybrid contribution 0.510 -0.199 -0.713 0.899 sum -7.829 -1.014 7.647 10.991 Atomic orbital electron populations 1.23104 0.78576 1.03983 1.01419 1.86200 1.21110 1.26074 1.88208 1.18449 0.89307 0.85066 0.97260 1.21043 0.99893 0.91460 1.09621 1.20523 0.92290 0.97847 0.93346 1.30789 1.04505 1.21596 1.17970 1.01713 0.73252 0.73475 0.72958 1.93513 1.64915 1.60798 1.77292 1.93526 1.38349 1.86436 1.76899 1.57065 1.27534 1.66831 1.30571 1.21319 0.89226 0.94578 0.99203 1.19672 0.81282 0.96935 0.93313 1.21472 1.00445 1.06737 1.29679 0.90103 1.24852 0.98485 0.94587 0.94724 1.69908 1.33134 1.18924 1.30848 0.86996 0.84816 0.80946 0.77978 1.19662 1.21008 1.18691 1.20800 1.00872 0.89617 0.95558 1.18211 0.88252 0.86465 1.03307 1.86102 1.19153 1.27684 1.89142 1.23198 0.77989 1.03939 1.02476 0.92414 0.88186 0.92621 0.84315 0.84289 0.93262 0.90356 0.92348 0.94147 0.93713 0.92478 0.82848 0.88301 0.90911 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.71 10.28 -34.23 -0.35 -5.06 16 3 C 0.15 2.49 6.70 -39.12 -0.26 2.23 16 4 C -0.20 -2.99 9.04 -39.46 -0.36 -3.34 16 5 C -0.02 -0.33 9.51 -39.58 -0.38 -0.71 16 6 C -0.66 -12.38 5.97 -39.58 -0.24 -12.62 16 7 S 2.70 52.62 5.65 -107.50 -0.61 52.01 16 8 O -0.97 -18.94 16.35 -57.17 -0.93 -19.88 16 9 O -0.96 -20.88 15.83 -57.17 -0.90 -21.78 16 10 N -0.98 -19.44 3.17 -123.06 -0.39 -19.83 16 11 C 0.10 1.67 10.31 59.85 0.62 2.29 16 12 C 0.21 4.80 4.48 -5.20 -0.02 4.77 16 13 C -0.54 -14.16 9.94 -34.44 -0.34 -14.50 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 15 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 17 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 21 C -0.05 -0.95 8.51 -39.46 -0.34 -1.28 16 22 C 0.08 1.60 6.70 -39.12 -0.26 1.34 16 23 O -0.31 -5.71 10.28 -34.24 -0.35 -6.06 16 24 C 0.02 0.30 9.81 101.05 0.99 1.29 16 25 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 28 H 0.14 1.53 6.30 -52.49 -0.33 1.20 16 29 H 0.14 1.90 7.61 -52.49 -0.40 1.50 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 32 H 0.06 0.83 7.79 -51.93 -0.40 0.42 16 33 H 0.04 0.89 7.17 -51.93 -0.37 0.52 16 34 H 0.04 1.04 6.34 -51.93 -0.33 0.71 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.15 3.01 5.85 -52.48 -0.31 2.70 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.30 7.66 -51.93 -0.40 0.90 16 39 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -33.05 340.57 -7.01 -40.06 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.01 Total: 2.01 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 0.31 Total: -17.33 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.38 Total: -44.59 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -2.54 Total: -52.78 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 16 Polarization: 52.62 SS G_CDS: -0.61 Total: 52.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.05 -7.01 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032129763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.054 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds