Wall clock time and date at job start Tue Mar 31 2020 11:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 S 1.76195 * 119.92813 * 179.76958 * 6 5 4 8 8 O 1.42091 * 106.40453 * 23.56516 * 7 6 5 9 9 O 1.42107 * 106.40241 * 156.48679 * 7 6 5 10 10 N 1.65605 * 107.21922 * 270.02258 * 7 6 5 11 11 C 1.46502 * 119.99401 * 90.00136 * 10 7 6 12 12 C 1.46490 * 120.00212 * 270.00125 * 10 7 6 13 13 C 1.50699 * 109.47476 * 94.99921 * 12 10 7 14 14 H 1.08002 * 119.99563 * 0.02562 * 13 12 10 15 15 C 1.37880 * 120.00568 * 179.97438 * 13 12 10 16 16 N 1.31511 * 119.99961 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99592 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47072 * 90.00131 * 17 15 13 19 19 H 1.48500 * 109.46677 * 209.99995 * 17 15 13 20 20 H 1.48500 * 109.47056 * 329.99661 * 17 15 13 21 21 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 22 22 C 1.38563 * 119.99940 * 359.97369 * 21 6 5 23 23 O 1.35997 * 120.07546 * 180.02562 * 22 21 6 24 24 C 1.42902 * 116.99582 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 28 28 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 30 30 H 1.08998 * 109.46991 * 90.00510 * 11 10 7 31 31 H 1.09004 * 109.46640 * 209.99855 * 11 10 7 32 32 H 1.08993 * 109.47375 * 329.99769 * 11 10 7 33 33 H 1.09004 * 109.47331 * 215.00029 * 12 10 7 34 34 H 1.09001 * 109.47264 * 334.99921 * 12 10 7 35 35 H 0.97005 * 119.99686 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.00331 * 179.97438 * 21 6 5 37 37 H 1.09007 * 109.46665 * 179.97438 * 24 23 22 38 38 H 1.08998 * 109.47287 * 299.99772 * 24 23 22 39 39 H 1.09001 * 109.47198 * 60.00379 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 16 4.0987 5.2519 -0.0016 8 8 3.1651 6.1746 0.5423 9 8 5.3950 5.0456 0.5429 10 7 4.3203 5.6886 -1.5836 11 6 3.2862 6.4548 -2.2836 12 6 5.5501 5.3087 -2.2831 13 6 5.3203 4.0283 -3.0439 14 1 4.3545 3.5460 -3.0101 15 6 6.3426 3.4730 -3.7839 16 7 6.1418 2.3559 -4.4482 17 14 8.0128 4.3076 -3.8429 18 1 8.8635 3.7907 -2.7410 19 1 8.6634 4.0211 -5.1467 20 1 7.8390 5.7742 -3.6880 21 6 4.0602 2.5235 -0.0005 22 6 3.4359 1.2864 0.0000 23 8 4.1795 0.1478 0.0010 24 6 5.6003 0.3008 0.0009 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2146 2.3197 -0.0099 29 1 1.3341 4.5115 -0.0026 30 1 3.4732 7.5207 -2.1534 31 1 3.3082 6.2091 -3.3454 32 1 2.3081 6.2047 -1.8730 33 1 5.8314 6.0992 -2.9788 34 1 6.3501 5.1615 -1.5575 35 1 6.8612 1.9651 -4.9686 36 1 5.1386 2.5841 -0.0005 37 1 6.0716 -0.6821 0.0022 38 1 5.9066 0.8498 -0.8896 39 1 5.9065 0.8513 0.8904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032129763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:39 Heat of formation + Delta-G solvation = -132.428287 kcal Electronic energy + Delta-G solvation = -25502.931032 eV Core-core repulsion = 21731.358032 eV Total energy + Delta-G solvation = -3771.573001 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65444 -39.56010 -38.35122 -37.98502 -37.30544 -36.91874 -34.48321 -31.68421 -31.50150 -30.24241 -28.34288 -28.17426 -26.78007 -24.10236 -23.65852 -23.31081 -20.39267 -19.63645 -19.06394 -18.68113 -18.26013 -18.02789 -17.30142 -17.15397 -16.99556 -16.24654 -16.20691 -15.88921 -15.53680 -15.39690 -14.66576 -14.47130 -14.29307 -14.19702 -14.10588 -13.78324 -13.45985 -13.30401 -13.15970 -13.10292 -12.98449 -12.72500 -12.41723 -12.36342 -12.24877 -12.22028 -12.17203 -11.96416 -11.81703 -11.64895 -10.75794 -10.02808 -9.73898 -9.13860 -8.26289 -6.31425 -0.57923 -0.19451 0.18801 1.38531 1.41344 1.49051 1.97017 2.13618 2.21735 2.35916 2.40465 2.78460 3.07945 3.28773 3.65015 3.83590 4.04325 4.05097 4.15855 4.28022 4.32010 4.37801 4.39349 4.47704 4.64261 4.69479 4.71306 4.72559 4.77906 4.95087 4.96758 4.98883 5.06972 5.34673 5.45863 5.47272 5.74513 5.93079 6.31750 6.40902 6.74182 7.32638 8.88623 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.006505 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.628458 B = 4303.242160 C = 5535.606468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.323 6.323 3 C 0.144 3.856 4 C -0.190 4.190 5 C -0.019 4.019 6 C -0.680 4.680 7 S 2.707 3.293 8 O -0.972 6.972 9 O -0.990 6.990 10 N -0.987 5.987 11 C 0.090 3.910 12 C 0.216 3.784 13 C -0.536 4.536 14 H 0.047 0.953 15 C 0.024 3.976 16 N -0.936 5.936 17 Si 0.921 3.079 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.240 1.240 21 C -0.070 4.070 22 C 0.055 3.945 23 O -0.321 6.321 24 C 0.018 3.982 25 H 0.069 0.931 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.266 0.734 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.041 0.959 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 0.285 8.315 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.097 3.903 4 C -0.209 4.209 5 C -0.039 4.039 6 C -0.768 4.768 7 S 2.799 3.201 8 O -0.963 6.963 9 O -0.981 6.981 10 N -0.826 5.826 11 C -0.054 4.054 12 C 0.092 3.908 13 C -0.575 4.575 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.576 5.576 17 Si 0.745 3.255 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.163 1.163 21 C -0.091 4.091 22 C 0.008 3.992 23 O -0.236 6.236 24 C -0.076 4.076 25 H 0.088 0.912 26 H 0.141 0.859 27 H 0.096 0.904 28 H 0.202 0.798 29 H 0.186 0.814 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.060 0.940 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.991 0.271 8.900 13.383 hybrid contribution 0.818 -0.625 -0.846 1.333 sum -9.172 -0.354 8.054 12.212 Atomic orbital electron populations 1.23543 0.75538 1.06218 1.03037 1.86184 1.24253 1.25473 1.87733 1.18699 0.88903 0.86517 0.96216 1.21518 1.01960 0.89990 1.07455 1.20968 0.91377 0.99663 0.91861 1.30656 1.05836 1.20436 1.19911 1.01242 0.72731 0.73533 0.72636 1.93502 1.64535 1.61035 1.77214 1.93482 1.40131 1.86916 1.77575 1.57041 1.27559 1.67371 1.30619 1.21630 0.89356 0.95554 0.98892 1.19463 0.82588 0.95618 0.93172 1.21606 0.98922 1.07694 1.29283 0.93479 1.25627 1.02250 0.95128 0.94543 1.70043 1.34402 1.20771 1.32378 0.86098 0.80259 0.81233 0.77922 1.19439 1.20796 1.16266 1.20739 1.00423 0.90602 0.97292 1.18558 0.89621 0.86304 1.04668 1.86065 1.20125 1.28007 1.89383 1.23309 0.77236 1.05498 1.01561 0.91201 0.85913 0.90391 0.79809 0.81392 0.90877 0.90725 0.90153 0.92726 0.94198 0.92503 0.84472 0.85281 0.93983 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -9.56 10.28 -79.62 -0.82 -10.38 16 3 C 0.14 4.78 6.70 22.57 0.15 4.93 16 4 C -0.19 -5.16 9.04 22.35 0.20 -4.96 16 5 C -0.02 -0.58 9.51 22.27 0.21 -0.37 16 6 C -0.68 -25.37 5.97 22.27 0.13 -25.24 16 7 S 2.71 104.30 5.65 -56.49 -0.32 103.98 16 8 O -0.97 -36.00 16.35 -128.00 -2.09 -38.10 16 9 O -0.99 -43.59 15.83 -128.00 -2.03 -45.62 16 10 N -0.99 -38.28 3.17 -543.24 -1.72 -40.00 16 11 C 0.09 2.76 10.31 127.77 1.32 4.07 16 12 C 0.22 9.72 4.48 85.63 0.38 10.11 16 13 C -0.54 -28.44 9.94 25.60 0.25 -28.18 16 14 H 0.05 2.77 8.06 -2.91 -0.02 2.74 16 15 C 0.02 1.30 5.47 84.66 0.46 1.76 16 16 N -0.94 -55.36 13.96 21.45 0.30 -55.07 16 17 Si 0.92 41.42 27.47 68.60 1.88 43.31 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 21 C -0.07 -2.86 8.51 22.35 0.19 -2.67 16 22 C 0.05 2.14 6.70 22.57 0.15 2.29 16 23 O -0.32 -12.41 10.28 -79.65 -0.82 -13.23 16 24 C 0.02 0.61 9.81 113.37 1.11 1.72 16 25 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 26 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 0.97 7.67 -2.39 -0.02 0.95 16 28 H 0.18 3.18 6.30 -2.91 -0.02 3.16 16 29 H 0.17 4.00 7.61 -2.91 -0.02 3.98 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 32 H 0.08 2.06 7.79 -2.39 -0.02 2.05 16 33 H 0.05 2.31 7.17 -2.38 -0.02 2.29 16 34 H 0.04 1.85 6.34 -2.39 -0.02 1.83 16 35 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 36 H 0.14 5.81 5.85 -2.91 -0.02 5.79 16 37 H 0.13 3.34 8.14 -2.38 -0.02 3.32 16 38 H 0.04 1.62 7.66 -2.39 -0.02 1.61 16 39 H 0.07 1.99 7.66 -2.39 -0.02 1.97 16 Total: -1.00 -73.30 340.57 1.08 -72.22 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.01 Total: 18.12 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 5.68 Total: -35.24 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -1.42 Total: -95.06 kcal Atomic # 8 Polarization: -101.57 SS G_CDS: -5.76 Total: -107.32 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.88 Total: 43.31 kcal Atomic # 16 Polarization: 104.30 SS G_CDS: -0.32 Total: 103.98 kcal Total: -73.30 1.08 -72.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032129763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.208 kcal (2) G-P(sol) polarization free energy of solvation -73.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds