Wall clock time and date at job start Tue Mar 31 2020 11:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 117.00374 * 2 1 4 4 C 1.38726 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.00327 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.99835 * 359.97438 * 5 4 3 7 7 O 1.35975 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00093 * 0.02562 * 7 6 5 9 9 C 1.38681 * 119.99538 * 0.02562 * 6 5 4 10 10 S 1.76204 * 119.99342 * 179.97438 * 9 6 5 11 11 O 1.42105 * 106.39972 * 181.45719 * 10 9 6 12 12 O 1.42098 * 106.40426 * 48.53891 * 10 9 6 13 13 N 1.65595 * 107.21987 * 294.99603 * 10 9 6 14 14 C 1.46498 * 120.00275 * 270.00253 * 13 10 9 15 15 C 1.46498 * 119.99850 * 89.99964 * 13 10 9 16 16 C 1.50709 * 109.47113 * 95.00266 * 15 13 10 17 17 H 1.08002 * 119.99589 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00118 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99969 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47717 * 89.99326 * 20 18 16 22 22 H 1.48497 * 109.47284 * 209.99491 * 20 18 16 23 23 H 1.48504 * 109.46928 * 329.99484 * 20 18 16 24 24 C 1.38146 * 120.00351 * 0.22758 * 9 6 5 25 25 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46877 * 300.00122 * 1 2 3 27 27 H 1.08995 * 109.47121 * 59.99813 * 1 2 3 28 28 H 1.08000 * 119.99562 * 359.97438 * 4 3 2 29 29 H 1.07991 * 120.00532 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47553 * 180.02562 * 8 7 6 31 31 H 1.09004 * 109.47473 * 300.00600 * 8 7 6 32 32 H 1.08997 * 109.47016 * 60.00394 * 8 7 6 33 33 H 1.09009 * 109.46956 * 90.00041 * 14 13 10 34 34 H 1.08994 * 109.47112 * 209.99740 * 14 13 10 35 35 H 1.09001 * 109.47155 * 330.00448 * 14 13 10 36 36 H 1.08996 * 109.47764 * 215.00207 * 15 13 10 37 37 H 1.09003 * 109.47361 * 335.00581 * 15 13 10 38 38 H 0.96993 * 120.00108 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.00165 * 179.72447 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3033 3.6782 -0.0005 7 8 3.9206 4.8897 -0.0005 8 6 3.0807 6.0458 0.0006 9 6 4.0585 2.5150 -0.0011 10 16 5.8181 2.6073 -0.0024 11 8 6.2901 1.2674 -0.0374 12 8 6.1724 3.5296 1.0188 13 7 6.2716 3.3003 -1.4364 14 6 6.5319 2.4586 -2.6068 15 6 6.4123 4.7552 -1.5345 16 6 7.8526 5.1370 -1.3086 17 1 8.5893 4.3722 -1.1111 18 6 8.2297 6.4624 -1.3528 19 7 7.3325 7.3936 -1.5927 20 14 10.0150 6.9354 -1.0734 21 1 10.7339 6.9449 -2.3728 22 1 10.0791 8.2874 -0.4624 23 1 10.6515 5.9500 -0.1629 24 6 3.4313 1.2842 -0.0058 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2124 2.3185 0.0005 29 1 1.3298 4.5113 0.0000 30 1 3.6985 6.9438 0.0000 31 1 2.4506 6.0381 -0.8888 32 1 2.4523 6.0374 0.8911 33 1 5.6092 2.3269 -3.1721 34 1 7.2801 2.9367 -3.2390 35 1 6.8999 1.4860 -2.2803 36 1 6.1005 5.0845 -2.5257 37 1 5.7873 5.2325 -0.7798 38 1 7.5978 8.3260 -1.6242 39 1 4.0194 0.3784 -0.0107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032129765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:45 Heat of formation + Delta-G solvation = -106.095520 kcal Electronic energy + Delta-G solvation = -25417.673364 eV Core-core repulsion = 21647.242237 eV Total energy + Delta-G solvation = -3770.431126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46566 -39.02251 -36.59503 -36.18881 -35.35746 -35.00205 -32.34585 -31.49256 -29.80389 -27.65245 -27.47888 -26.88807 -24.97703 -23.09913 -22.17261 -22.06861 -19.16062 -17.91223 -17.53879 -17.08969 -16.51429 -16.38087 -15.89310 -15.70280 -15.45998 -15.17088 -14.79071 -14.36032 -14.31730 -13.63612 -13.24775 -13.21931 -12.91594 -12.84015 -12.51739 -12.13579 -12.05435 -11.67977 -11.62924 -11.41509 -11.33288 -11.24785 -11.04545 -10.96201 -10.58529 -10.53593 -10.30528 -10.29923 -9.93625 -9.61546 -9.43223 -8.34940 -7.96450 -7.80738 -5.98729 -4.00402 0.75959 1.19522 1.38848 3.12888 3.35657 3.39131 3.40531 3.42435 3.49521 3.86985 4.42361 4.51415 4.57538 4.66991 4.84348 4.91385 4.92630 5.19044 5.22570 5.34640 5.36539 5.37585 5.42680 5.65306 5.77644 5.83900 5.86307 6.02474 6.11255 6.12283 6.33485 6.41424 6.69338 7.17933 7.37346 7.42422 7.59894 7.77893 7.99966 8.31921 9.01569 9.63032 11.09927 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.004652 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.035492 B = 6017.075093 C = 6758.860012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.060 3.940 4 C -0.119 4.119 5 C -0.194 4.194 6 C 0.197 3.803 7 O -0.287 6.287 8 C 0.028 3.972 9 C -0.674 4.674 10 S 2.693 3.307 11 O -0.979 6.979 12 O -0.930 6.930 13 N -0.982 5.982 14 C 0.093 3.907 15 C 0.250 3.750 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.897 5.897 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.017 4.017 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.261 0.739 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.165 -8.577 0.641 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.015 3.985 4 C -0.138 4.138 5 C -0.213 4.213 6 C 0.148 3.852 7 O -0.199 6.199 8 C -0.067 4.067 9 C -0.757 4.757 10 S 2.779 3.221 11 O -0.969 6.969 12 O -0.920 6.920 13 N -0.823 5.823 14 C -0.053 4.053 15 C 0.128 3.872 16 C -0.563 4.563 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.537 5.537 20 Si 0.722 3.278 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.036 4.036 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.133 0.867 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.395 -8.768 1.267 17.762 hybrid contribution -0.480 0.796 -0.232 0.958 sum -15.875 -7.972 1.035 17.795 Atomic orbital electron populations 1.23025 0.78823 1.03873 1.01067 1.86094 1.20921 1.26312 1.89730 1.18849 0.92250 0.84341 1.03077 1.21229 0.99934 0.91829 1.00823 1.21124 0.93297 0.98614 1.08305 1.18388 0.90789 0.85391 0.90600 1.86438 1.35019 1.11819 1.86575 1.23178 0.95977 0.86979 1.00540 1.30682 1.29438 0.95350 1.20226 1.02116 0.73079 0.72864 0.74057 1.93479 1.78844 1.37440 1.87176 1.93613 1.80619 1.63035 1.54762 1.57285 1.80871 1.17776 1.26322 1.21393 1.00577 0.94614 0.88742 1.19322 0.97506 0.71533 0.98820 1.21557 0.94150 0.92457 1.48176 0.92223 1.24879 0.97657 0.96245 0.95144 1.69914 1.33342 1.00521 1.49927 0.86553 0.85046 0.77880 0.78308 1.20754 1.21171 1.19691 1.20002 0.91735 0.96625 0.95284 0.88254 0.92876 0.92854 0.84860 0.84390 0.86724 0.92596 0.92815 0.94358 0.90181 0.91382 0.95151 0.91835 0.92936 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.92 10.50 -19.68 -0.21 -4.12 16 3 C 0.06 0.84 6.69 -39.24 -0.26 0.58 16 4 C -0.12 -1.45 9.03 -39.45 -0.36 -1.81 16 5 C -0.19 -2.62 9.03 -39.45 -0.36 -2.97 16 6 C 0.20 3.40 6.63 -39.24 -0.26 3.14 16 7 O -0.29 -5.38 6.46 -29.57 -0.19 -5.57 16 8 C 0.03 0.38 9.81 101.05 0.99 1.38 16 9 C -0.67 -12.31 5.92 -39.45 -0.23 -12.55 16 10 S 2.69 58.03 5.24 -107.50 -0.56 57.46 16 11 O -0.98 -21.15 15.57 -57.17 -0.89 -22.04 16 12 O -0.93 -23.39 16.26 -62.54 -1.02 -24.41 16 13 N -0.98 -21.52 3.17 -123.05 -0.39 -21.91 16 14 C 0.09 1.68 10.68 59.85 0.64 2.32 16 15 C 0.25 6.35 4.87 -5.19 -0.03 6.33 16 16 C -0.52 -14.85 9.38 -34.44 -0.32 -15.18 16 17 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.02 -0.27 9.48 -39.45 -0.37 -0.65 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 28 H 0.13 1.14 6.29 -52.49 -0.33 0.81 16 29 H 0.14 1.44 6.29 -52.49 -0.33 1.11 16 30 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 32 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 35 H 0.07 1.15 7.02 -51.93 -0.36 0.78 16 36 H 0.03 0.79 8.11 -51.93 -0.42 0.36 16 37 H 0.06 1.68 4.84 -51.93 -0.25 1.43 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.15 2.36 7.33 -52.49 -0.38 1.98 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -34.86 337.30 -7.03 -41.89 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.91 Total: -1.73 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 0.33 Total: -16.55 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.35 Total: -46.92 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -2.30 Total: -56.13 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 58.03 SS G_CDS: -0.56 Total: 57.46 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.86 -7.03 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032129765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.202 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds