Wall clock time and date at job start Tue Mar 31 2020 11:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 117.00374 * 2 1 4 4 C 1.38726 * 119.99874 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.00327 * 180.02562 * 4 3 2 6 6 C 1.38728 * 119.99835 * 359.97438 * 5 4 3 7 7 O 1.35975 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00093 * 0.02562 * 7 6 5 9 9 C 1.38681 * 119.99538 * 0.02562 * 6 5 4 10 10 S 1.76204 * 119.99342 * 179.97438 * 9 6 5 11 11 O 1.42105 * 106.39972 * 181.45719 * 10 9 6 12 12 O 1.42098 * 106.40426 * 48.53891 * 10 9 6 13 13 N 1.65595 * 107.21987 * 294.99603 * 10 9 6 14 14 C 1.46498 * 120.00275 * 270.00253 * 13 10 9 15 15 C 1.46498 * 119.99850 * 89.99964 * 13 10 9 16 16 C 1.50709 * 109.47113 * 95.00266 * 15 13 10 17 17 H 1.08002 * 119.99589 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00118 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99969 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47717 * 89.99326 * 20 18 16 22 22 H 1.48497 * 109.47284 * 209.99491 * 20 18 16 23 23 H 1.48504 * 109.46928 * 329.99484 * 20 18 16 24 24 C 1.38146 * 120.00351 * 0.22758 * 9 6 5 25 25 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46877 * 300.00122 * 1 2 3 27 27 H 1.08995 * 109.47121 * 59.99813 * 1 2 3 28 28 H 1.08000 * 119.99562 * 359.97438 * 4 3 2 29 29 H 1.07991 * 120.00532 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47553 * 180.02562 * 8 7 6 31 31 H 1.09004 * 109.47473 * 300.00600 * 8 7 6 32 32 H 1.08997 * 109.47016 * 60.00394 * 8 7 6 33 33 H 1.09009 * 109.46956 * 90.00041 * 14 13 10 34 34 H 1.08994 * 109.47112 * 209.99740 * 14 13 10 35 35 H 1.09001 * 109.47155 * 330.00448 * 14 13 10 36 36 H 1.08996 * 109.47764 * 215.00207 * 15 13 10 37 37 H 1.09003 * 109.47361 * 335.00581 * 15 13 10 38 38 H 0.96993 * 120.00108 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.00165 * 179.72447 * 24 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3033 3.6782 -0.0005 7 8 3.9206 4.8897 -0.0005 8 6 3.0807 6.0458 0.0006 9 6 4.0585 2.5150 -0.0011 10 16 5.8181 2.6073 -0.0024 11 8 6.2901 1.2674 -0.0374 12 8 6.1724 3.5296 1.0188 13 7 6.2716 3.3003 -1.4364 14 6 6.5319 2.4586 -2.6068 15 6 6.4123 4.7552 -1.5345 16 6 7.8526 5.1370 -1.3086 17 1 8.5893 4.3722 -1.1111 18 6 8.2297 6.4624 -1.3528 19 7 7.3325 7.3936 -1.5927 20 14 10.0150 6.9354 -1.0734 21 1 10.7339 6.9449 -2.3728 22 1 10.0791 8.2874 -0.4624 23 1 10.6515 5.9500 -0.1629 24 6 3.4313 1.2842 -0.0058 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.2124 2.3185 0.0005 29 1 1.3298 4.5113 0.0000 30 1 3.6985 6.9438 0.0000 31 1 2.4506 6.0381 -0.8888 32 1 2.4523 6.0374 0.8911 33 1 5.6092 2.3269 -3.1721 34 1 7.2801 2.9367 -3.2390 35 1 6.8999 1.4860 -2.2803 36 1 6.1005 5.0845 -2.5257 37 1 5.7873 5.2325 -0.7798 38 1 7.5978 8.3260 -1.6242 39 1 4.0194 0.3784 -0.0107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032129765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:44 Heat of formation + Delta-G solvation = -131.931721 kcal Electronic energy + Delta-G solvation = -25418.793705 eV Core-core repulsion = 21647.242237 eV Total energy + Delta-G solvation = -3771.551468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55721 -40.08452 -38.21317 -37.41531 -37.12690 -36.77542 -34.43947 -32.61289 -30.84787 -29.58136 -28.33391 -27.83256 -26.75159 -24.33098 -24.03565 -23.20122 -20.39368 -19.44461 -18.77632 -18.52764 -18.37445 -17.81518 -17.12459 -16.94245 -16.85458 -16.49041 -16.25513 -15.80857 -15.46087 -15.12096 -14.89407 -14.59286 -14.02850 -13.98875 -13.82281 -13.66266 -13.49020 -13.23039 -13.07478 -12.99000 -12.88210 -12.70529 -12.51706 -12.42208 -12.33144 -12.22752 -11.91640 -11.73136 -11.52457 -11.44623 -10.58869 -10.49095 -9.71935 -8.94002 -8.13307 -6.22921 -0.54891 -0.29004 0.26077 1.40947 1.43188 1.53996 2.07297 2.17456 2.34915 2.42715 2.46906 2.86055 3.17731 3.44503 3.61783 3.74883 4.05943 4.12296 4.20752 4.30439 4.40963 4.41989 4.44165 4.54565 4.64669 4.71858 4.76906 4.79546 4.86571 4.97522 5.05415 5.12626 5.28430 5.36683 5.57938 5.83437 5.99067 6.17839 6.20881 6.39209 6.83857 7.43395 8.94096 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.004652 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.035492 B = 6017.075093 C = 6758.860012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.066 3.934 4 C -0.101 4.101 5 C -0.183 4.183 6 C 0.175 3.825 7 O -0.327 6.327 8 C 0.018 3.982 9 C -0.687 4.687 10 S 2.698 3.302 11 O -0.992 6.992 12 O -0.980 6.980 13 N -0.992 5.992 14 C 0.086 3.914 15 C 0.264 3.736 16 C -0.550 4.550 17 H 0.047 0.953 18 C 0.016 3.984 19 N -0.918 5.918 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.039 4.039 25 H 0.120 0.880 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.020 0.980 37 H 0.053 0.947 38 H 0.266 0.734 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.003 -8.950 0.320 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.247 6.247 3 C 0.021 3.979 4 C -0.119 4.119 5 C -0.202 4.202 6 C 0.127 3.873 7 O -0.240 6.240 8 C -0.075 4.075 9 C -0.776 4.776 10 S 2.790 3.210 11 O -0.982 6.982 12 O -0.970 6.970 13 N -0.832 5.832 14 C -0.059 4.059 15 C 0.142 3.858 16 C -0.589 4.589 17 H 0.065 0.935 18 C -0.183 4.183 19 N -0.558 5.558 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.059 4.059 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.198 0.802 29 H 0.192 0.808 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.186 -9.156 0.926 20.382 hybrid contribution 0.174 0.804 -0.125 0.832 sum -18.012 -8.352 0.801 19.870 Atomic orbital electron populations 1.23443 0.76039 1.05977 1.02624 1.86096 1.23749 1.25489 1.89327 1.18879 0.91550 0.85800 1.01719 1.21734 1.02101 0.90338 0.97744 1.21519 0.91643 1.00711 1.06347 1.18649 0.92429 0.84487 0.91772 1.86359 1.37402 1.13232 1.87028 1.23409 0.95912 0.85029 1.03169 1.29944 1.26552 0.97137 1.23920 1.01388 0.74400 0.71952 0.73221 1.93444 1.80222 1.37390 1.87166 1.93541 1.82629 1.64276 1.56549 1.57159 1.82006 1.16636 1.27354 1.21608 1.02088 0.94288 0.87921 1.18913 0.95783 0.73516 0.97632 1.21872 0.95505 0.92755 1.48817 0.93455 1.25634 1.01663 0.96201 0.94827 1.69991 1.34926 1.00852 1.50052 0.85658 0.80423 0.77573 0.78654 1.19196 1.20193 1.20256 1.20007 0.93382 0.95627 0.96844 0.86213 0.91227 0.91162 0.80207 0.80826 0.88392 0.90080 0.89909 0.91471 0.90524 0.90476 0.96198 0.92927 0.92500 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -7.20 10.50 -93.34 -0.98 -8.18 16 3 C 0.07 1.68 6.69 22.49 0.15 1.83 16 4 C -0.10 -2.01 9.03 22.36 0.20 -1.80 16 5 C -0.18 -4.30 9.03 22.36 0.20 -4.10 16 6 C 0.17 5.91 6.63 22.49 0.15 6.06 16 7 O -0.33 -12.43 6.46 -83.79 -0.54 -12.97 16 8 C 0.02 0.49 9.81 113.37 1.11 1.60 16 9 C -0.69 -25.36 5.92 22.35 0.13 -25.23 16 10 S 2.70 121.45 5.24 -56.49 -0.30 121.16 16 11 O -0.99 -44.57 15.57 -128.00 -1.99 -46.56 16 12 O -0.98 -52.15 16.26 -122.87 -2.00 -54.15 16 13 N -0.99 -45.11 3.17 -543.22 -1.72 -46.83 16 14 C 0.09 3.18 10.68 127.77 1.36 4.54 16 15 C 0.26 14.02 4.87 85.64 0.42 14.43 16 16 C -0.55 -32.29 9.38 25.60 0.24 -32.05 16 17 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 18 C 0.02 0.94 5.46 84.65 0.46 1.40 16 19 N -0.92 -53.55 13.29 21.45 0.28 -53.26 16 20 Si 0.95 45.47 29.54 68.60 2.03 47.49 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 C -0.04 -1.23 9.48 22.35 0.21 -1.02 16 25 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 27 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 28 H 0.18 1.88 6.29 -2.91 -0.02 1.86 16 29 H 0.17 2.75 6.29 -2.92 -0.02 2.73 16 30 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.08 1.69 7.66 -2.38 -0.02 1.67 16 32 H 0.08 1.66 7.66 -2.39 -0.02 1.64 16 33 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 35 H 0.08 2.66 7.02 -2.39 -0.02 2.64 16 36 H 0.02 1.07 8.11 -2.39 -0.02 1.05 16 37 H 0.05 2.92 4.84 -2.39 -0.01 2.91 16 38 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.15 4.71 7.33 -2.91 -0.02 4.69 16 Total: -1.00 -78.74 337.30 1.61 -77.13 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.07 Total: 9.25 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 5.76 Total: -33.07 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -1.44 Total: -100.10 kcal Atomic # 8 Polarization: -116.35 SS G_CDS: -5.51 Total: -121.86 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 121.45 SS G_CDS: -0.30 Total: 121.16 kcal Total: -78.74 1.61 -77.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032129765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.797 kcal (2) G-P(sol) polarization free energy of solvation -78.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds